Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03602

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,754,760	-		CCNA_03600	0.83	-1.0
3,754,767	-		CCNA_03600	0.84	+0.3
3,754,785	+		CCNA_03600	0.86	+1.2
3,754,793	-		CCNA_03600	0.87	-0.4
3,754,827	-				-0.8
3,754,879	+				-1.3
3,754,879	+				-0.4
3,754,879	+				-0.8
3,754,879	+				+0.2
3,754,879	+				-1.5
3,754,879	+				+0.2
3,754,887	-				-0.2
3,754,887	-				-0.7
3,754,887	-				-0.9
3,754,887	-				-1.1
3,754,949	+				+2.2
3,754,949	+				+0.2
3,754,967	+				+0.8
3,754,969	+				+1.0
3,754,969	+				+0.0
3,755,042	+				+0.1
3,755,081	-		CCNA_03601	0.10	-1.5
3,755,120	+		CCNA_03601	0.16	+2.2
3,755,120	+		CCNA_03601	0.16	+2.6
3,755,120	+		CCNA_03601	0.16	+1.9
3,755,120	+		CCNA_03601	0.16	+1.4
3,755,120	+		CCNA_03601	0.16	+1.2
3,755,128	-		CCNA_03601	0.17	-1.4
3,755,128	-		CCNA_03601	0.17	+1.0
3,755,134	-		CCNA_03601	0.18	-1.6
3,755,181	+		CCNA_03601	0.25	+1.3
3,755,184	-		CCNA_03601	0.25	-0.4
3,755,206	+		CCNA_03601	0.28	+0.8
3,755,214	+		CCNA_03601	0.29	+1.4
3,755,214	+		CCNA_03601	0.29	+0.1
3,755,214	-		CCNA_03601	0.29	-1.4
3,755,227	-		CCNA_03601	0.31	+0.8
3,755,249	+		CCNA_03601	0.34	+2.3
3,755,249	+		CCNA_03601	0.34	+0.9
3,755,249	+		CCNA_03601	0.34	+2.1
3,755,257	-		CCNA_03601	0.35	+0.4
3,755,257	-		CCNA_03601	0.35	-2.1
3,755,257	-		CCNA_03601	0.35	+2.5
3,755,257	-		CCNA_03601	0.35	+0.5
3,755,290	-		CCNA_03601	0.40	-0.4
3,755,292	+		CCNA_03601	0.40	+2.4
3,755,292	+		CCNA_03601	0.40	+0.2
3,755,292	+		CCNA_03601	0.40	+0.3
3,755,292	+		CCNA_03601	0.40	+1.5
3,755,339	+		CCNA_03601	0.47	+1.1
3,755,348	+		CCNA_03601	0.48	+1.5
3,755,392	+		CCNA_03601	0.55	+1.0
3,755,392	+		CCNA_03601	0.55	+1.1
3,755,400	-		CCNA_03601	0.56	-0.9
3,755,400	-		CCNA_03601	0.56	-1.4
3,755,455	+		CCNA_03601	0.64	+3.5
3,755,455	+		CCNA_03601	0.64	+3.5
3,755,465	+		CCNA_03601	0.65	+0.7
3,755,465	+		CCNA_03601	0.65	+2.0
3,755,465	+		CCNA_03601	0.65	+0.5
3,755,465	+		CCNA_03601	0.65	+0.8
3,755,522	+		CCNA_03601	0.73	+1.7
3,755,522	+		CCNA_03601	0.73	+1.4
3,755,527	+		CCNA_03601	0.74	+1.5
3,755,527	+		CCNA_03601	0.74	+2.1
3,755,530	-		CCNA_03601	0.75	+1.8
3,755,535	-		CCNA_03601	0.75	+0.2
3,755,535	-		CCNA_03601	0.75	-2.3
3,755,654	+				+2.1
3,755,654	+				+1.9
3,755,657	-				-0.1
3,755,659	+				+1.5
3,755,662	+				+2.7
3,755,662	-				-0.5
3,755,667	-				-0.7
3,755,672	+				+2.0
3,755,677	+				+2.9
3,755,682	+				+1.9
3,755,687	+				+2.0
3,755,687	+				+1.2
3,755,687	+				+2.4
3,755,687	+				+2.4
3,755,695	-				-0.7
3,755,695	-				-1.2
3,755,695	-				-0.4
3,755,701	+				+1.7
3,755,709	-				-1.3
3,755,780	+				+2.2
3,755,841	+				+2.2
3,755,841	+				+1.6
3,755,842	-				-0.5
3,755,879	+		CCNA_03602	0.12	+0.9
3,755,879	+		CCNA_03602	0.12	+1.2
3,755,894	+		CCNA_03602	0.13	+0.8
3,755,931	+		CCNA_03602	0.16	+1.7
3,755,938	+		CCNA_03602	0.17	+1.4
3,755,939	-		CCNA_03602	0.17	-0.2
3,755,941	-		CCNA_03602	0.17	-1.2
3,755,948	+		CCNA_03602	0.18	+0.5
3,756,017	+		CCNA_03602	0.23	+1.2
3,756,039	+		CCNA_03602	0.25	+0.6
3,756,084	+		CCNA_03602	0.28	-0.7
3,756,084	+		CCNA_03602	0.28	+0.4
3,756,084	+		CCNA_03602	0.28	+1.0
3,756,084	+		CCNA_03602	0.28	+0.8
3,756,092	-		CCNA_03602	0.29	-0.7
3,756,092	-		CCNA_03602	0.29	-0.6
3,756,137	-		CCNA_03602	0.32	+1.1
3,756,158	+		CCNA_03602	0.34	+0.8
3,756,164	-		CCNA_03602	0.35	+0.2
3,756,186	-		CCNA_03602	0.36	-0.1
3,756,190	+		CCNA_03602	0.37	+0.9
3,756,190	+		CCNA_03602	0.37	+1.3
3,756,190	+		CCNA_03602	0.37	+0.8
3,756,190	+		CCNA_03602	0.37	+1.8
3,756,196	-		CCNA_03602	0.37	+2.2
3,756,198	-		CCNA_03602	0.37	+1.2
3,756,198	-		CCNA_03602	0.37	+1.4
3,756,200	+		CCNA_03602	0.37	+0.2
3,756,200	+		CCNA_03602	0.37	+0.4
3,756,200	+		CCNA_03602	0.37	+0.3
3,756,208	-		CCNA_03602	0.38	+0.1
3,756,263	-		CCNA_03602	0.42	-0.7
3,756,263	-		CCNA_03602	0.42	-1.9
3,756,286	-		CCNA_03602	0.44	-1.4
3,756,290	+		CCNA_03602	0.44	+0.0
3,756,335	+		CCNA_03602	0.48	+1.6
3,756,379	+		CCNA_03602	0.51	+0.2
3,756,446	-		CCNA_03602	0.57	-0.4
3,756,463	+		CCNA_03602	0.58	+1.3
3,756,470	+		CCNA_03602	0.59	-0.7
3,756,496	-		CCNA_03602	0.61	-1.1
3,756,515	+		CCNA_03602	0.62	+1.4
3,756,590	+		CCNA_03602	0.68	+0.9
3,756,600	+		CCNA_03602	0.69	+2.2
3,756,600	+		CCNA_03602	0.69	+1.0
3,756,600	+		CCNA_03602	0.69	+0.8
3,756,664	+		CCNA_03602	0.74	+1.4
3,756,667	-		CCNA_03602	0.74	+1.3
3,756,667	-		CCNA_03602	0.74	-0.4
3,756,669	+		CCNA_03602	0.74	+1.8
3,756,682	-		CCNA_03602	0.75	+1.0
3,756,733	-		CCNA_03602	0.79	+1.8
3,756,771	+		CCNA_03602	0.82	+0.9
3,756,788	+		CCNA_03602	0.83	+0.9
3,756,790	-		CCNA_03602	0.84	-0.7
3,756,841	+		CCNA_03602	0.88	+1.1
3,756,850	-		CCNA_03602	0.88	-0.8
3,756,857	+		CCNA_03602	0.89	+2.1
3,756,857	+		CCNA_03602	0.89	+0.1
3,756,860	-		CCNA_03602	0.89	-0.1
3,756,873	+				+0.6
3,756,873	+				+0.9
3,756,884	+				+1.6
3,756,896	+				+2.6
3,756,896	+				+0.8
3,756,896	+				+0.0
3,756,896	+				+0.5
3,756,937	+				+0.9
3,756,984	+				+1.3
3,756,992	-				-0.9
3,757,032	-				-1.0
3,757,041	-				+0.4
3,757,047	+				+0.5
3,757,113	-				-1.2
3,757,138	+				+1.3
3,757,172	-				-0.5
3,757,178	+				+0.2
3,757,186	-				-2.5
3,757,327	+		CCNA_03603	0.15	+1.2
3,757,327	+		CCNA_03603	0.15	+0.1
3,757,327	+		CCNA_03603	0.15	+1.1
3,757,335	-		CCNA_03603	0.16	+1.5
3,757,335	-		CCNA_03603	0.16	-0.9
3,757,372	+		CCNA_03603	0.18	+0.0
3,757,375	-		CCNA_03603	0.18	-0.4
3,757,406	+				+1.0
3,757,414	-		CCNA_03603	0.20	-2.6
3,757,419	-		CCNA_03603	0.21	+0.8
3,757,419	-		CCNA_03603	0.21	-1.6
3,757,458	-		CCNA_03603	0.23	-1.2
3,757,475	+		CCNA_03603	0.24	+1.2
3,757,475	+		CCNA_03603	0.24	-0.7
3,757,507	+		CCNA_03603	0.26	+1.3
3,757,508	-		CCNA_03603	0.26	-0.2
3,757,515	-		CCNA_03603	0.26	-1.1
3,757,559	+		CCNA_03603	0.29	-1.7
3,757,569	+		CCNA_03603	0.29	-0.3
3,757,606	+		CCNA_03603	0.31	-1.4
3,757,606	+		CCNA_03603	0.31	-0.7
3,757,606	+		CCNA_03603	0.31	-2.4
3,757,606	+		CCNA_03603	0.31	+0.6
3,757,611	+		CCNA_03603	0.32	+1.4
3,757,611	+		CCNA_03603	0.32	+0.0
3,757,611	+		CCNA_03603	0.32	-0.6
3,757,611	+		CCNA_03603	0.32	-0.6
3,757,611	+		CCNA_03603	0.32	-0.9
3,757,614	-		CCNA_03603	0.32	-0.2
3,757,614	-		CCNA_03603	0.32	-2.0
3,757,619	-		CCNA_03603	0.32	+1.5
3,757,619	-		CCNA_03603	0.32	+0.1
3,757,619	-		CCNA_03603	0.32	-1.5
3,757,619	-		CCNA_03603	0.32	-1.6
3,757,645	+		CCNA_03603	0.34	+0.2
3,757,646	+		CCNA_03603	0.34	-0.2
3,757,684	-		CCNA_03603	0.36	+0.9
3,757,684	-		CCNA_03603	0.36	-0.5
3,757,690	-		CCNA_03603	0.36	+1.0
3,757,703	+		CCNA_03603	0.37	+0.7
3,757,703	+		CCNA_03603	0.37	+1.5
3,757,731	-		CCNA_03603	0.39	-2.0
3,757,731	-		CCNA_03603	0.39	-1.3
3,757,810	-		CCNA_03603	0.43	+2.1
3,757,897	-		CCNA_03603	0.48	-0.9
3,757,917	-		CCNA_03603	0.49	-0.8
3,757,948	-		CCNA_03603	0.51	-0.5