Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03572

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,724,463	-		CCNA_03570	0.77	-0.7
3,724,463	-		CCNA_03570	0.77	+1.3
3,724,474	+		CCNA_03570	0.78	+0.2
3,724,495	-		CCNA_03570	0.81	+0.9
3,724,589	-				-0.5
3,724,607	-				-0.1
3,724,626	-				-1.4
3,724,670	-				+0.0
3,724,679	+				-0.5
3,724,679	+				-1.1
3,724,681	+				+0.4
3,724,687	-				+0.4
3,724,718	+		CCNA_03571	0.12	-1.4
3,724,727	-		CCNA_03571	0.13	-0.5
3,724,733	+		CCNA_03571	0.14	-0.6
3,724,741	-		CCNA_03571	0.15	-1.5
3,724,783	+		CCNA_03571	0.20	+2.4
3,724,798	+		CCNA_03571	0.22	+0.2
3,724,798	+		CCNA_03571	0.22	-1.1
3,724,804	+		CCNA_03571	0.22	-1.0
3,724,806	-		CCNA_03571	0.23	+0.8
3,724,806	-		CCNA_03571	0.23	+0.6
3,724,842	+		CCNA_03571	0.27	+0.3
3,724,844	+		CCNA_03571	0.28	-1.3
3,724,890	+		CCNA_03571	0.33	+1.3
3,724,906	+		CCNA_03571	0.35	+0.5
3,724,917	+		CCNA_03571	0.37	+0.7
3,724,922	+		CCNA_03571	0.37	-0.2
3,724,922	+		CCNA_03571	0.37	+1.3
3,724,925	-		CCNA_03571	0.38	+0.3
3,724,930	-		CCNA_03571	0.38	-0.5
3,724,948	-		CCNA_03571	0.41	+2.3
3,724,958	-		CCNA_03571	0.42	+2.8
3,724,989	+		CCNA_03571	0.46	-0.2
3,724,999	-		CCNA_03571	0.47	-2.5
3,725,001	+		CCNA_03571	0.47	-1.3
3,725,053	+		CCNA_03571	0.54	-1.7
3,725,053	+		CCNA_03571	0.54	-0.3
3,725,058	+				-0.8
3,725,061	-				-0.1
3,725,063	+				-0.2
3,725,063	+				-0.8
3,725,063	+				-0.9
3,725,063	+				-1.3
3,725,063	+				-0.3
3,725,066	-				-1.4
3,725,071	-				-0.3
3,725,099	-				-2.3
3,725,106	+				-1.0
3,725,106	+				-0.1
3,725,114	-				+0.8
3,725,117	+				+0.0
3,725,120	-				-1.1
3,725,125	-				+0.5
3,725,125	-				-0.8
3,725,125	-				+2.1
3,725,125	-				+0.3
3,725,127	+				-1.0
3,725,144	-				-1.1
3,725,294	-		CCNA_03571	0.84	+0.5
3,725,318	-		CCNA_03571	0.87	+0.8
3,725,342	-				-0.2
3,725,342	-				+1.5
3,725,363	-				+2.1
3,725,400	+				+0.9
3,725,400	+				+0.5
3,725,408	-				-1.5
3,725,408	-				-0.6
3,725,408	-				-0.0
3,725,419	-				+0.1
3,725,438	+				-0.1
3,725,444	+				-1.5
3,725,452	-				-0.2
3,725,452	-				-0.7
3,725,452	-				+0.3
3,725,454	+				+0.1
3,725,454	+				-0.2
3,725,462	-				-1.0
3,725,462	-				+0.4
3,725,471	+				-1.3
3,725,480	+				-1.9
3,725,487	+		CCNA_03572	0.10	+0.2
3,725,488	-		CCNA_03572	0.11	-0.4
3,725,488	-		CCNA_03572	0.11	+0.1
3,725,489	-		CCNA_03572	0.11	-0.5
3,725,492	+		CCNA_03572	0.12	-0.8
3,725,515	+		CCNA_03572	0.17	-0.4
3,725,571	-		CCNA_03572	0.30	+3.0
3,725,573	+		CCNA_03572	0.30	-1.3
3,725,588	-		CCNA_03572	0.34	-0.7
3,725,590	+		CCNA_03572	0.34	-0.7
3,725,604	+		CCNA_03572	0.38	-0.4
3,725,628	-		CCNA_03572	0.43	+1.0
3,725,633	-		CCNA_03572	0.44	-0.5
3,725,640	+		CCNA_03572	0.46	-0.1
3,725,657	+		CCNA_03572	0.50	-1.5
3,725,665	-		CCNA_03572	0.52	-1.3
3,725,665	-		CCNA_03572	0.52	-1.5
3,725,665	-		CCNA_03572	0.52	-0.5
3,725,665	-		CCNA_03572	0.52	+0.3
3,725,679	-		CCNA_03572	0.55	+1.0
3,725,679	-		CCNA_03572	0.55	-0.5
3,725,679	-		CCNA_03572	0.55	-0.9
3,725,682	+		CCNA_03572	0.56	-0.9
3,725,712	+		CCNA_03572	0.62	-2.0
3,725,720	-		CCNA_03572	0.64	-1.2
3,725,779	+		CCNA_03572	0.78	-1.5
3,725,787	-		CCNA_03572	0.80	+4.3
3,725,787	-		CCNA_03572	0.80	+4.2
3,725,860	-				-0.7
3,725,896	-				-0.5
3,725,907	-				-0.3
3,725,909	+				-0.5
3,725,946	-				+0.1
3,725,963	+				-0.4
3,725,992	+				-0.5
3,725,992	+				-0.4
3,725,992	+				-0.9
3,726,011	+				-1.3
3,726,011	+				-1.0
3,726,019	-				+0.4
3,726,020	-				-1.2
3,726,038	+				-0.2
3,726,038	+				-1.0
3,726,038	+				-2.8
3,726,038	+				-1.5
3,726,038	+				+0.2
3,726,040	+				-1.4
3,726,046	-				+0.1
3,726,046	-				+1.4
3,726,046	-				-0.0
3,726,060	+		CCNA_03573	0.10	-1.2
3,726,071	+		CCNA_03573	0.11	+1.0
3,726,074	-		CCNA_03573	0.11	+0.2
3,726,081	+		CCNA_03573	0.12	-1.1
3,726,083	+		CCNA_03573	0.12	-1.2
3,726,089	-		CCNA_03573	0.12	-1.5
3,726,103	-		CCNA_03573	0.13	+0.5
3,726,137	-		CCNA_03573	0.15	-2.5
3,726,147	-		CCNA_03573	0.15	-0.7
3,726,269	-		CCNA_03573	0.22	-2.0
3,726,293	+		CCNA_03573	0.24	+1.1
3,726,293	+		CCNA_03573	0.24	-1.2
3,726,301	-		CCNA_03573	0.24	+0.6
3,726,312	-		CCNA_03573	0.25	-1.4
3,726,348	-		CCNA_03573	0.27	+1.5
3,726,352	+		CCNA_03573	0.27	-1.3
3,726,365	-				+3.9
3,726,388	-		CCNA_03573	0.29	+0.0
3,726,391	+		CCNA_03573	0.29	+1.4
3,726,391	+		CCNA_03573	0.29	-0.2
3,726,399	-		CCNA_03573	0.30	-1.6
3,726,406	+		CCNA_03573	0.30	-0.7
3,726,428	+		CCNA_03573	0.32	-2.0
3,726,429	+		CCNA_03573	0.32	-0.8
3,726,436	-		CCNA_03573	0.32	-0.1
3,726,471	-		CCNA_03573	0.34	+0.9
3,726,494	-		CCNA_03573	0.35	-0.4
3,726,509	+		CCNA_03573	0.36	-1.1
3,726,541	-				+1.9
3,726,567	+		CCNA_03573	0.40	-1.0
3,726,603	+		CCNA_03573	0.42	-2.6
3,726,603	+		CCNA_03573	0.42	+0.4
3,726,610	+		CCNA_03573	0.42	+1.5
3,726,624	+		CCNA_03573	0.43	+0.2
3,726,674	+		CCNA_03573	0.46	-0.9
3,726,699	-		CCNA_03573	0.47	-0.2
3,726,718	+		CCNA_03573	0.48	-2.6
3,726,718	+		CCNA_03573	0.48	+0.9
3,726,726	-		CCNA_03573	0.49	+1.0
3,726,777	-		CCNA_03573	0.52	-0.5
3,726,808	+		CCNA_03573	0.53	-1.2
3,726,815	-		CCNA_03573	0.54	+1.3
3,726,830	-		CCNA_03573	0.55	-0.2