Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03552

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,707,840	+		CCNA_03549	0.87	+0.2
3,707,840	+		CCNA_03549	0.87	+0.8
3,707,848	-		CCNA_03549	0.88	-0.2
3,707,974	+				+1.9
3,707,976	+				+0.1
3,708,011	-				+0.7
3,708,020	+				-0.4
3,708,061	+				-0.7
3,708,061	+				-0.9
3,708,066	+				-0.7
3,708,066	+				+1.3
3,708,066	+				-1.3
3,708,066	+				+0.4
3,708,074	-				-0.7
3,708,097	-				+1.4
3,708,099	+				-1.4
3,708,125	-				+0.7
3,708,128	+				-0.9
3,708,135	-				+0.7
3,708,135	-				-1.5
3,708,136	-				-0.5
3,708,382	+				+1.9
3,708,390	-				+2.9
3,708,390	-				+1.0
3,708,390	-				+0.7
3,708,392	+				+0.8
3,708,392	+				+2.6
3,708,430	-				-1.4
3,708,468	+				-0.1
3,708,468	+				-0.8
3,708,484	-				+0.0
3,708,502	+				-0.4
3,708,506	-				-0.9
3,708,510	+				+1.0
3,708,510	-				+0.7
3,708,531	+				-1.0
3,708,537	+				-0.7
3,708,537	+				-0.1
3,708,577	-				+1.1
3,708,580	+				+0.9
3,708,580	+				-0.7
3,708,603	+				-1.3
3,708,604	-				+0.3
3,708,630	-				+4.2
3,708,652	+				-0.1
3,708,652	+				-1.7
3,708,668	+				-0.6
3,708,671	-				-2.2
3,708,671	-				-1.3
3,708,671	-				-0.1
3,708,671	-				-0.1
3,708,755	-				-1.3
3,708,763	+				-0.2
3,708,788	+				+0.0
3,708,788	+				+0.5
3,708,789	+				-0.7
3,708,797	+				+0.6
3,708,797	+				+1.5
3,708,797	+				-0.9
3,708,805	-				+2.5
3,708,805	-				-1.0
3,708,805	-				+0.2
3,708,805	-				-1.8
3,708,848	+				-1.1
3,708,859	+				+2.0
3,708,881	+				+1.2
3,708,881	+				+0.3
3,708,881	+				+1.6
3,708,889	-				+1.6
3,708,903	+				+0.7
3,708,903	+				+1.1
3,708,903	+				+1.7
3,708,903	+				+1.3
3,708,903	+				+1.2
3,708,903	+				+1.0
3,708,903	+				+1.4
3,708,903	+				+1.2
3,708,903	+				+0.9
3,708,911	-				+1.4
3,708,911	-				+1.1
3,708,911	-				-1.0
3,708,911	-				-2.2
3,708,911	-				+0.6
3,708,927	+		CCNA_03552	0.11	+1.2
3,708,927	+		CCNA_03552	0.11	+1.4
3,708,927	+		CCNA_03552	0.11	+1.4
3,708,927	+		CCNA_03552	0.11	+0.9
3,708,935	-		CCNA_03552	0.11	-2.0
3,708,935	-		CCNA_03552	0.11	+0.7
3,708,935	-		CCNA_03552	0.11	-1.3
3,708,935	-		CCNA_03552	0.11	-1.3
3,709,003	+		CCNA_03552	0.17	+2.0
3,709,013	+		CCNA_03552	0.18	+2.0
3,709,013	+		CCNA_03552	0.18	+1.2
3,709,047	-		CCNA_03552	0.21	-1.9
3,709,049	-		CCNA_03552	0.21	+0.1
3,709,083	-		CCNA_03552	0.24	-2.0
3,709,140	-		CCNA_03552	0.29	+0.9
3,709,150	-		CCNA_03552	0.29	-1.6
3,709,156	-		CCNA_03552	0.30	-0.2
3,709,207	+		CCNA_03552	0.34	+1.6
3,709,215	-		CCNA_03552	0.35	-0.9
3,709,308	+		CCNA_03552	0.43	+1.9
3,709,316	-		CCNA_03552	0.43	-0.7
3,709,374	-		CCNA_03552	0.48	+0.3
3,709,407	+		CCNA_03552	0.51	+1.5
3,709,414	+		CCNA_03552	0.52	-0.1
3,709,425	+		CCNA_03552	0.53	+3.0
3,709,430	+		CCNA_03552	0.53	+2.1
3,709,433	-		CCNA_03552	0.53	+2.1
3,709,438	-		CCNA_03552	0.54	+0.9
3,709,460	+		CCNA_03552	0.56	+1.2
3,709,460	+		CCNA_03552	0.56	+1.3
3,709,463	-		CCNA_03552	0.56	+0.6
3,709,470	+		CCNA_03552	0.56	+1.7
3,709,473	-		CCNA_03552	0.57	+0.3
3,709,497	+		CCNA_03552	0.59	+2.0
3,709,497	+		CCNA_03552	0.59	+1.6
3,709,497	-		CCNA_03552	0.59	+0.9
3,709,497	-		CCNA_03552	0.59	+1.4
3,709,560	-		CCNA_03552	0.64	+0.0
3,709,582	+		CCNA_03552	0.66	+0.8
3,709,592	+		CCNA_03552	0.67	+2.9
3,709,614	-		CCNA_03552	0.69	-1.7
3,709,629	-		CCNA_03552	0.70	-1.1
3,709,630	+		CCNA_03552	0.70	+1.2
3,709,717	+		CCNA_03552	0.77	+2.1
3,709,725	-		CCNA_03552	0.78	+1.0
3,709,758	+		CCNA_03552	0.81	+2.1
3,709,759	-		CCNA_03552	0.81	-1.6
3,709,766	+		CCNA_03552	0.81	+2.1
3,709,766	-		CCNA_03552	0.81	-1.1
3,709,839	+		CCNA_03552	0.88	+2.3
3,709,870	-				-1.3
3,709,881	+				+1.6
3,709,881	+				+1.3
3,709,883	-				+0.2
3,709,886	+				+0.8
3,709,918	-				-0.2
3,709,953	-				-0.0
3,709,963	+				+0.1
3,709,968	+				+1.6
3,710,000	+				-0.4
3,710,008	-				+0.2
3,710,014	+				+0.5
3,710,017	-				-1.5
3,710,022	-				-0.4
3,710,022	-				+0.4
3,710,048	+				+1.1
3,710,089	-		CCNA_03553	0.16	-1.7
3,710,093	-		CCNA_03553	0.16	+0.7
3,710,157	+		CCNA_03553	0.29	+0.7
3,710,157	+				+5.9
3,710,220	-		CCNA_03553	0.41	-0.2
3,710,270	-		CCNA_03553	0.50	+0.1
3,710,271	-		CCNA_03553	0.51	-2.1
3,710,291	+		CCNA_03553	0.55	+0.4
3,710,307	-		CCNA_03553	0.58	-2.2
3,710,308	-		CCNA_03553	0.58	-0.8
3,710,318	-		CCNA_03553	0.60	+0.0
3,710,397	+		CCNA_03553	0.75	+1.5
3,710,414	+		CCNA_03553	0.78	+0.6
3,710,470	+		CCNA_03553	0.89	-0.4
3,710,478	-				-1.6
3,710,498	-				-0.2
3,710,515	+				+0.3
3,710,515	+				+1.5
3,710,523	-				+0.2
3,710,547	-				-1.2
3,710,554	+				+0.7
3,710,555	+				+2.7
3,710,562	-				+1.1
3,710,562	-				-0.0
3,710,562	-				-1.5
3,710,562	-				-0.8
3,710,562	-				-0.7
3,710,598	+				+1.5
3,710,598	+				+1.3
3,710,598	+				+1.2
3,710,598	+				+1.1
3,710,598	+				+0.7
3,710,598	+				+0.4
3,710,598	+				+1.0
3,710,598	+				+0.8
3,710,598	+				+1.9
3,710,606	-				-0.5
3,710,606	-				+0.2
3,710,606	-				-0.8
3,710,606	-				+0.3
3,710,606	-				+2.5
3,710,606	-				+1.0
3,710,606	-				+2.3
3,710,606	-				+0.2
3,710,606	-				+0.4
3,710,610	+				+1.6
3,710,618	-				-0.5
3,710,664	+		CCNA_03554	0.10	+0.7
3,710,672	-		CCNA_03554	0.11	-1.8
3,710,691	-		CCNA_03554	0.12	-0.9
3,710,691	-		CCNA_03554	0.12	-1.3
3,710,732	-		CCNA_03554	0.16	+1.9
3,710,732	-		CCNA_03554	0.16	-0.7
3,710,733	-		CCNA_03554	0.16	+0.1
3,710,803	-		CCNA_03554	0.21	-1.8
3,710,820	+		CCNA_03554	0.22	+1.1
3,710,827	+		CCNA_03554	0.23	+1.4
3,710,827	+		CCNA_03554	0.23	-0.6
3,710,830	-		CCNA_03554	0.23	-0.1
3,710,830	-		CCNA_03554	0.23	-0.9
3,710,830	-		CCNA_03554	0.23	-1.3
3,710,832	+		CCNA_03554	0.23	-0.1
3,710,836	+		CCNA_03554	0.23	-0.5
3,710,873	+		CCNA_03554	0.26	+0.3
3,710,874	+		CCNA_03554	0.26	+1.7
3,710,876	-		CCNA_03554	0.26	+1.5
3,710,898	-		CCNA_03554	0.28	-0.3
3,710,906	+		CCNA_03554	0.29	+0.6
3,710,912	-		CCNA_03554	0.29	-0.8
3,710,919	+		CCNA_03554	0.30	+0.9
3,710,925	+		CCNA_03554	0.30	+0.3
3,710,926	+		CCNA_03554	0.30	+0.1
3,710,927	-		CCNA_03554	0.30	-0.6
3,710,927	-		CCNA_03554	0.30	-0.3
3,710,939	-		CCNA_03554	0.31	+1.7
3,710,947	+		CCNA_03554	0.32	+2.5
3,710,976	+		CCNA_03554	0.34	+1.0
3,710,976	+		CCNA_03554	0.34	+2.3