Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03528

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,684,831	+				+0.8
3,684,836	+				-1.2
3,684,843	-				+1.3
3,684,851	-				-0.1
3,684,851	-				-0.2
3,684,870	+				-1.7
3,684,870	+				-1.5
3,684,871	-				+2.2
3,684,876	-				+1.2
3,684,910	-				-0.7
3,684,933	+				-0.2
3,684,933	+				-2.0
3,684,933	+				-3.0
3,684,941	-				+1.0
3,684,945	+				-0.1
3,684,945	+				-0.9
3,684,945	+				+0.3
3,684,945	+				-0.2
3,684,946	+				-1.3
3,684,953	-				-2.8
3,684,953	-				+0.8
3,684,953	-				+0.3
3,684,953	-				-1.8
3,684,953	-				-0.4
3,684,968	+				-0.2
3,684,985	-				+0.6
3,685,033	+				-1.3
3,685,037	-		CCNA_03528	0.10	+0.0
3,685,059	-		CCNA_03528	0.13	-0.3
3,685,066	+		CCNA_03528	0.14	-0.2
3,685,074	-		CCNA_03528	0.15	+1.4
3,685,121	+		CCNA_03528	0.22	+0.2
3,685,134	-		CCNA_03528	0.24	+2.0
3,685,144	-		CCNA_03528	0.25	+1.5
3,685,154	-		CCNA_03528	0.26	+2.4
3,685,216	+		CCNA_03528	0.35	-0.5
3,685,224	-		CCNA_03528	0.36	+2.7
3,685,296	-		CCNA_03528	0.46	+2.0
3,685,296	-		CCNA_03528	0.46	+1.3
3,685,350	-		CCNA_03528	0.54	+1.2
3,685,361	+		CCNA_03528	0.55	-0.8
3,685,370	-		CCNA_03528	0.56	+1.4
3,685,374	-		CCNA_03528	0.57	+1.6
3,685,410	+		CCNA_03528	0.62	+1.0
3,685,417	-				+1.0
3,685,425	+		CCNA_03528	0.64	+0.0
3,685,433	-		CCNA_03528	0.65	+0.3
3,685,433	-		CCNA_03528	0.65	+0.4
3,685,433	-		CCNA_03528	0.65	+1.3
3,685,437	+		CCNA_03528	0.66	+3.2
3,685,455	-		CCNA_03528	0.68	+1.4
3,685,467	+		CCNA_03528	0.70	+1.8
3,685,485	+		CCNA_03528	0.73	-0.7
3,685,486	-		CCNA_03528	0.73	+2.2
3,685,600	+		CCNA_03528	0.89	+2.0
3,685,604	-		CCNA_03528	0.89	+0.6
3,685,608	-		CCNA_03528	0.90	+0.1
3,685,662	-				+1.1
3,685,688	+				+0.0
3,685,696	-				-0.3
3,685,701	-				+0.3
3,685,712	+				+0.0
3,685,721	-				+2.5
3,685,759	-				+2.4
3,685,828	-		CCNA_03529	0.13	-1.9
3,685,854	+		CCNA_03529	0.17	+0.7
3,685,880	-		CCNA_03529	0.20	-1.6
3,685,910	+		CCNA_03529	0.24	-1.3
3,685,911	+		CCNA_03529	0.24	-1.2
3,685,922	+		CCNA_03529	0.25	+0.5
3,685,930	-		CCNA_03529	0.27	+0.7
3,685,964	+		CCNA_03529	0.31	-1.3
3,685,977	-		CCNA_03529	0.33	+0.0
3,686,006	+		CCNA_03529	0.36	-0.4
3,686,009	-		CCNA_03529	0.37	+0.5
3,686,014	-				+1.8
3,686,014	-		CCNA_03529	0.38	-1.4
3,686,094	+		CCNA_03529	0.48	+1.3
3,686,106	+		CCNA_03529	0.50	+0.0
3,686,132	+		CCNA_03529	0.53	-0.4
3,686,135	-		CCNA_03529	0.53	+0.5
3,686,137	+		CCNA_03529	0.54	+0.5
3,686,137	+		CCNA_03529	0.54	+0.3
3,686,145	-		CCNA_03529	0.55	-1.4
3,686,145	-		CCNA_03529	0.55	-1.9
3,686,145	-		CCNA_03529	0.55	+2.3
3,686,147	-		CCNA_03529	0.55	+0.0
3,686,147	-		CCNA_03529	0.55	-1.2
3,686,161	+		CCNA_03529	0.57	+1.8
3,686,169	+		CCNA_03529	0.58	-0.3
3,686,169	+		CCNA_03529	0.58	-2.8
3,686,172	-		CCNA_03529	0.58	+0.0
3,686,174	+		CCNA_03529	0.59	-0.0
3,686,183	+		CCNA_03529	0.60	+1.2
3,686,191	-		CCNA_03529	0.61	+1.0
3,686,191	-		CCNA_03529	0.61	+0.8
3,686,225	-		CCNA_03529	0.65	+0.0
3,686,239	-		CCNA_03529	0.67	-0.6
3,686,274	-		CCNA_03529	0.72	-1.5
3,686,324	-		CCNA_03529	0.78	+1.5
3,686,335	-		CCNA_03529	0.80	-2.3
3,686,342	+		CCNA_03529	0.81	-1.3
3,686,342	+		CCNA_03529	0.81	+0.0
3,686,357	+		CCNA_03529	0.83	-0.2
3,686,384	-		CCNA_03529	0.86	-1.5
3,686,405	+		CCNA_03529	0.89	-0.8
3,686,412	+		CCNA_03529	0.90	-0.6
3,686,413	-				-1.0
3,686,413	-				-0.7
3,686,413	-				-1.5
3,686,413	-				-1.8
3,686,420	-				+0.0
3,686,420	-				-1.3
3,686,422	+				+0.6
3,686,423	+				-0.9
3,686,430	-				-0.7
3,686,431	-				+0.6
3,686,446	-				+0.5
3,686,512	+				-0.8
3,686,512	+				-0.8
3,686,512	+				+0.2
3,686,512	+				+0.5
3,686,517	+				-0.2
3,686,520	-				-1.7
3,686,520	-				-0.7
3,686,531	+				+1.0
3,686,539	-				-0.6
3,686,539	-				+1.3
3,686,539	-				+1.0
3,686,555	+				-0.2
3,686,563	-				+0.1
3,686,565	+				-1.5