Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03526

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03524 and CCNA_03525 are separated by 9 nucleotidesCCNA_03525 and CCNA_03526 overlap by 54 nucleotidesCCNA_03526 and CCNA_03527 are separated by 18 nucleotides CCNA_03524: CCNA_03524 - di-/tripeptide transporter, at 3,681,121 to 3,683,001 _03524 CCNA_03525: CCNA_03525 - hypothetical protein, at 3,683,011 to 3,683,352 _03525 CCNA_03526: CCNA_03526 - hypothetical protein, at 3,683,299 to 3,683,442 _03526 CCNA_03527: CCNA_03527 - glutamate-cysteine ligase family 2, at 3,683,461 to 3,684,822 _03527 Position (kb) 3683 3684Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3682.301 kb on - strand, within CCNA_03524at 3682.328 kb on + strand, within CCNA_03524at 3682.457 kb on - strandat 3682.460 kb on + strand, within CCNA_03524at 3682.465 kb on + strand, within CCNA_03524at 3682.465 kb on + strand, within CCNA_03524at 3682.468 kb on - strand, within CCNA_03524at 3682.547 kb on - strand, within CCNA_03524at 3682.548 kb on - strand, within CCNA_03524at 3682.579 kb on + strand, within CCNA_03524at 3682.579 kb on + strand, within CCNA_03524at 3682.627 kb on + strand, within CCNA_03524at 3682.636 kb on - strand, within CCNA_03524at 3682.733 kb on - strand, within CCNA_03524at 3682.771 kb on - strand, within CCNA_03524at 3682.794 kb on + strand, within CCNA_03524at 3682.851 kb on - strandat 3682.915 kb on + strandat 3682.969 kb on + strandat 3683.098 kb on + strand, within CCNA_03525at 3683.106 kb on - strand, within CCNA_03525at 3683.166 kb on - strand, within CCNA_03525at 3683.194 kb on - strand, within CCNA_03525at 3683.209 kb on + strand, within CCNA_03525at 3683.214 kb on + strand, within CCNA_03525at 3683.214 kb on + strand, within CCNA_03525at 3683.222 kb on - strand, within CCNA_03525at 3683.237 kb on + strand, within CCNA_03525at 3683.245 kb on - strand, within CCNA_03525at 3683.245 kb on - strand, within CCNA_03525at 3683.258 kb on + strand, within CCNA_03525at 3683.302 kb on + strandat 3683.405 kb on + strand, within CCNA_03526at 3683.410 kb on + strand, within CCNA_03526at 3683.413 kb on - strand, within CCNA_03526at 3683.413 kb on - strand, within CCNA_03526at 3683.415 kb on + strand, within CCNA_03526at 3683.458 kb on + strandat 3683.477 kb on + strandat 3683.477 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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3,682,301 - CCNA_03524 0.63 +2.6
3,682,328 + CCNA_03524 0.64 -1.6
3,682,457 - +1.9
3,682,460 + CCNA_03524 0.71 -0.8
3,682,465 + CCNA_03524 0.71 +0.1
3,682,465 + CCNA_03524 0.71 +0.6
3,682,468 - CCNA_03524 0.72 +1.1
3,682,547 - CCNA_03524 0.76 +1.5
3,682,548 - CCNA_03524 0.76 +0.2
3,682,579 + CCNA_03524 0.78 +0.7
3,682,579 + CCNA_03524 0.78 -0.9
3,682,627 + CCNA_03524 0.80 +1.4
3,682,636 - CCNA_03524 0.81 +0.0
3,682,733 - CCNA_03524 0.86 +1.4
3,682,771 - CCNA_03524 0.88 +1.3
3,682,794 + CCNA_03524 0.89 -0.2
3,682,851 - +2.3
3,682,915 + +1.1
3,682,969 + +1.0
3,683,098 + CCNA_03525 0.25 -0.9
3,683,106 - CCNA_03525 0.28 +1.1
3,683,166 - CCNA_03525 0.45 -1.0
3,683,194 - CCNA_03525 0.54 -0.4
3,683,209 + CCNA_03525 0.58 -1.2
3,683,214 + CCNA_03525 0.59 +0.5
3,683,214 + CCNA_03525 0.59 -2.1
3,683,222 - CCNA_03525 0.62 +0.5
3,683,237 + CCNA_03525 0.66 -0.5
3,683,245 - CCNA_03525 0.68 +0.0
3,683,245 - CCNA_03525 0.68 +0.3
3,683,258 + CCNA_03525 0.72 -0.7
3,683,302 + +0.1
3,683,405 + CCNA_03526 0.74 -1.0
3,683,410 + CCNA_03526 0.77 -1.2
3,683,413 - CCNA_03526 0.79 -1.5
3,683,413 - CCNA_03526 0.79 -1.5
3,683,415 + CCNA_03526 0.81 -2.8
3,683,458 + +0.2
3,683,477 + -1.6
3,683,477 + -0.7

Or see this region's nucleotide sequence