Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03522

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,677,783	-				-1.5
3,677,807	+		CCNA_03521	0.13	-1.1
3,677,807	+		CCNA_03521	0.13	+1.6
3,677,807	+		CCNA_03521	0.13	-0.1
3,677,807	+		CCNA_03521	0.13	-1.3
3,677,807	+		CCNA_03521	0.13	-1.2
3,677,807	+		CCNA_03521	0.13	+1.1
3,677,815	-		CCNA_03521	0.14	-0.3
3,677,815	-		CCNA_03521	0.14	-0.2
3,677,815	-		CCNA_03521	0.14	+1.4
3,677,821	+		CCNA_03521	0.14	+0.6
3,677,826	+		CCNA_03521	0.15	-1.2
3,677,829	-		CCNA_03521	0.15	+1.1
3,677,880	+		CCNA_03521	0.21	-2.2
3,677,880	+		CCNA_03521	0.21	-1.5
3,677,889	+		CCNA_03521	0.22	-1.7
3,677,897	-		CCNA_03521	0.23	-2.4
3,677,952	+		CCNA_03521	0.30	-2.5
3,677,955	-		CCNA_03521	0.30	-0.1
3,677,960	-		CCNA_03521	0.31	+1.2
3,677,960	-		CCNA_03521	0.31	-0.7
3,677,960	-		CCNA_03521	0.31	-0.1
3,677,960	-		CCNA_03521	0.31	+0.1
3,677,960	-		CCNA_03521	0.31	+0.3
3,677,962	+		CCNA_03521	0.31	+1.5
3,678,026	+		CCNA_03521	0.39	+0.2
3,678,029	-		CCNA_03521	0.39	+0.3
3,678,029	-		CCNA_03521	0.39	-1.0
3,678,043	+		CCNA_03521	0.41	+0.7
3,678,048	+		CCNA_03521	0.41	-2.5
3,678,048	+		CCNA_03521	0.41	+0.8
3,678,048	+		CCNA_03521	0.41	-0.8
3,678,048	+		CCNA_03521	0.41	-0.4
3,678,048	+		CCNA_03521	0.41	+0.7
3,678,048	+		CCNA_03521	0.41	-0.2
3,678,051	-		CCNA_03521	0.42	+0.4
3,678,056	-		CCNA_03521	0.42	+0.3
3,678,056	-		CCNA_03521	0.42	-0.8
3,678,056	-		CCNA_03521	0.42	-1.0
3,678,056	-		CCNA_03521	0.42	-1.0
3,678,063	+		CCNA_03521	0.43	-0.8
3,678,099	+		CCNA_03521	0.48	-0.4
3,678,121	+		CCNA_03521	0.50	-0.3
3,678,143	+		CCNA_03521	0.53	-1.1
3,678,143	+		CCNA_03521	0.53	-0.6
3,678,143	+		CCNA_03521	0.53	-0.0
3,678,143	+		CCNA_03521	0.53	-1.0
3,678,150	+		CCNA_03521	0.54	-2.4
3,678,151	-		CCNA_03521	0.54	-0.2
3,678,158	+		CCNA_03521	0.55	+0.6
3,678,160	+		CCNA_03521	0.55	-0.0
3,678,160	+		CCNA_03521	0.55	-0.8
3,678,166	-		CCNA_03521	0.56	-0.8
3,678,169	+		CCNA_03521	0.56	-0.7
3,678,177	+		CCNA_03521	0.57	-0.9
3,678,206	+		CCNA_03521	0.60	-1.0
3,678,206	+		CCNA_03521	0.60	-1.2
3,678,206	+		CCNA_03521	0.60	+0.4
3,678,214	-		CCNA_03521	0.61	-1.5
3,678,214	-		CCNA_03521	0.61	+1.2
3,678,214	-		CCNA_03521	0.61	-0.9
3,678,245	+		CCNA_03521	0.65	-0.0
3,678,260	+		CCNA_03521	0.67	-1.2
3,678,267	-		CCNA_03521	0.68	-0.3
3,678,267	-		CCNA_03521	0.68	-1.3
3,678,267	-		CCNA_03521	0.68	+1.7
3,678,268	-		CCNA_03521	0.68	-1.6
3,678,303	+		CCNA_03521	0.72	-0.1
3,678,303	+		CCNA_03521	0.72	-1.7
3,678,303	+		CCNA_03521	0.72	+0.5
3,678,311	-		CCNA_03521	0.73	-0.4
3,678,352	+		CCNA_03521	0.78	-0.5
3,678,352	+		CCNA_03521	0.78	+0.1
3,678,360	-		CCNA_03521	0.79	+0.7
3,678,383	+		CCNA_03521	0.81	+0.2
3,678,423	-		CCNA_03521	0.86	+0.4
3,678,432	+		CCNA_03521	0.87	+0.6
3,678,432	+		CCNA_03521	0.87	-0.1
3,678,434	-		CCNA_03521	0.88	-2.0
3,678,463	+				+0.9
3,678,509	+				+2.3
3,678,527	-				+1.6
3,678,544	-				-2.5
3,678,562	+				+1.0
3,678,572	+				+1.7
3,678,572	+				+0.2
3,678,572	+				+0.8
3,678,578	+				+0.1
3,678,578	+				+0.2
3,678,580	-				+0.5
3,678,580	-				-0.5
3,678,580	-				+0.1
3,678,580	-				+0.9
3,678,586	-				-0.1
3,678,586	-				+0.8
3,678,598	-				-1.8
3,678,627	-				+0.4
3,678,636	+				+0.1
3,678,636	+				+0.4
3,678,650	+				+0.5
3,678,655	+				+0.7
3,678,678	-				+0.4
3,678,678	-				+0.4
3,678,678	-				-1.3
3,678,757	+				+2.2
3,678,762	-				+1.7
3,678,762	-				+1.7
3,678,776	-				+1.2
3,678,813	-				+0.4
3,678,818	-				+1.4
3,678,822	+				+2.6
3,678,822	+				+2.3
3,678,822	+				+1.7
3,678,830	-				+1.6
3,678,830	-				+0.6
3,678,863	+				+2.3
3,678,884	-		CCNA_03522	0.10	+1.3
3,678,884	-		CCNA_03522	0.10	-1.1
3,678,897	+		CCNA_03522	0.11	+2.2
3,678,899	+		CCNA_03522	0.11	+1.9
3,678,899	+		CCNA_03522	0.11	+2.1
3,678,899	+		CCNA_03522	0.11	+2.3
3,678,899	+		CCNA_03522	0.11	+2.3
3,678,899	+		CCNA_03522	0.11	+1.8
3,678,899	+		CCNA_03522	0.11	+2.4
3,678,899	+		CCNA_03522	0.11	+2.8
3,678,913	+		CCNA_03522	0.12	+1.6
3,678,924	+		CCNA_03522	0.13	+0.9
3,678,931	+		CCNA_03522	0.14	+1.9
3,678,931	+		CCNA_03522	0.14	+1.7
3,678,931	+		CCNA_03522	0.14	+0.7
3,678,931	+		CCNA_03522	0.14	+1.5
3,678,931	+		CCNA_03522	0.14	+1.1
3,678,931	+		CCNA_03522	0.14	-0.7
3,678,939	-		CCNA_03522	0.14	+0.7
3,678,939	-		CCNA_03522	0.14	+0.2
3,678,939	-		CCNA_03522	0.14	-0.6
3,678,939	-		CCNA_03522	0.14	+0.4
3,678,939	-		CCNA_03522	0.14	+2.0
3,678,939	-		CCNA_03522	0.14	-0.0
3,678,939	-		CCNA_03522	0.14	-0.4
3,678,939	-		CCNA_03522	0.14	+0.9
3,679,031	+		CCNA_03522	0.21	+2.2
3,679,081	+		CCNA_03522	0.24	+2.6
3,679,082	+		CCNA_03522	0.24	+2.6
3,679,117	-		CCNA_03522	0.27	-1.2
3,679,145	+		CCNA_03522	0.29	+1.8
3,679,199	-		CCNA_03522	0.32	-0.8
3,679,230	+		CCNA_03522	0.34	+2.1
3,679,293	+		CCNA_03522	0.39	+2.7
3,679,301	-		CCNA_03522	0.39	-0.6
3,679,415	+		CCNA_03522	0.47	+3.3
3,679,493	-		CCNA_03522	0.53	+0.9
3,679,513	-		CCNA_03522	0.54	-1.1
3,679,513	-		CCNA_03522	0.54	-0.7
3,679,527	-		CCNA_03522	0.55	-0.3
3,679,583	+		CCNA_03522	0.59	+1.5
3,679,669	+		CCNA_03522	0.65	-1.0
3,679,717	-		CCNA_03522	0.68	-1.9
3,679,776	+		CCNA_03522	0.72	+1.1
3,679,781	+		CCNA_03522	0.73	+1.8
3,679,789	-		CCNA_03522	0.73	-0.7
3,679,789	-		CCNA_03522	0.73	-0.7
3,679,845	+		CCNA_03522	0.77	+1.8
3,679,861	-		CCNA_03522	0.78	-1.3
3,679,883	-		CCNA_03522	0.80	-0.8
3,679,915	-		CCNA_03522	0.82	+1.4
3,679,957	-		CCNA_03522	0.85	+0.3
3,679,993	+		CCNA_03522	0.88	+2.9
3,680,022	+		CCNA_03522	0.90	+2.4
3,680,030	-				-0.5
3,680,062	-				+0.7
3,680,079	-				+1.0
3,680,093	+				+2.5
3,680,143	+				+1.5
3,680,264	-				+0.3
3,680,264	-				-1.8
3,680,323	+				-0.1
3,680,350	+				+1.6
3,680,381	+				+1.1
3,680,381	+				+0.1
3,680,389	-		CCNA_03523	0.11	+0.8
3,680,401	+		CCNA_03523	0.13	-1.1
3,680,409	-		CCNA_03523	0.15	-1.5
3,680,409	-		CCNA_03523	0.15	+1.2
3,680,416	+		CCNA_03523	0.16	-2.2
3,680,416	-		CCNA_03523	0.16	-0.5
3,680,439	+		CCNA_03523	0.21	+2.1
3,680,439	+		CCNA_03523	0.21	-0.2
3,680,447	-		CCNA_03523	0.22	-0.6
3,680,447	-		CCNA_03523	0.22	+0.7
3,680,449	+		CCNA_03523	0.23	-1.3
3,680,454	+		CCNA_03523	0.24	-0.8
3,680,499	+		CCNA_03523	0.33	+0.4
3,680,502	+		CCNA_03523	0.33	+1.1
3,680,517	-		CCNA_03523	0.36	-0.8
3,680,535	+		CCNA_03523	0.40	+0.5
3,680,536	-		CCNA_03523	0.40	+2.0
3,680,536	-		CCNA_03523	0.40	+1.4
3,680,536	-		CCNA_03523	0.40	+0.3
3,680,543	-		CCNA_03523	0.42	+2.5
3,680,543	-		CCNA_03523	0.42	+0.7
3,680,543	-		CCNA_03523	0.42	-0.3
3,680,574	+		CCNA_03523	0.48	-0.2
3,680,624	+		CCNA_03523	0.58	-0.3
3,680,632	-		CCNA_03523	0.59	+0.7
3,680,632	-		CCNA_03523	0.59	+0.6
3,680,657	-		CCNA_03523	0.64	-1.1
3,680,668	-		CCNA_03523	0.67	-1.2
3,680,738	-		CCNA_03523	0.81	-0.4
3,680,738	-		CCNA_03523	0.81	-0.7
3,680,738	-		CCNA_03523	0.81	+0.4
3,680,740	+		CCNA_03523	0.81	+1.9
3,680,743	-		CCNA_03523	0.82	+0.2
3,680,748	-		CCNA_03523	0.83	+0.7
3,680,748	-				+1.9
3,680,748	-		CCNA_03523	0.83	+0.1
3,680,762	-		CCNA_03523	0.86	+1.9
3,680,781	-		CCNA_03523	0.89	+0.1
3,680,792	+				-0.3
3,680,792	+				-0.6
3,680,800	-				-0.1
3,680,894	+				+1.6
3,680,902	-				+0.1
3,680,902	-				-1.6
3,680,902	-				-0.8
3,680,964	+				+1.5
3,680,969	+				+1.0
3,681,042	+				+1.6
3,681,043	-				+1.6
3,681,050	-				+1.9
3,681,050	-				+1.9
3,681,066	-				+1.8
3,681,078	+				+1.1
3,681,085	-				+2.8
3,681,114	-				+3.1
3,681,119	+				-1.0
3,681,127	-				+3.3