Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03481

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,643,405	-				+0.6
3,643,455	-		CCNA_03480	0.14	+1.3
3,643,498	+		CCNA_03480	0.19	-0.8
3,643,570	+		CCNA_03480	0.27	+1.6
3,643,577	+		CCNA_03480	0.28	+1.2
3,643,577	+		CCNA_03480	0.28	-0.6
3,643,577	+		CCNA_03480	0.28	-2.3
3,643,622	+		CCNA_03480	0.33	+1.9
3,643,643	-		CCNA_03480	0.36	+0.4
3,643,721	-		CCNA_03480	0.45	-1.3
3,643,723	+		CCNA_03480	0.45	-1.4
3,643,723	+		CCNA_03480	0.45	+1.6
3,643,723	+				+1.4
3,643,731	-		CCNA_03480	0.46	-0.5
3,643,731	-		CCNA_03480	0.46	+0.0
3,643,731	-				+1.4
3,643,731	-		CCNA_03480	0.46	-1.0
3,643,733	+		CCNA_03480	0.46	-0.0
3,643,733	-		CCNA_03480	0.46	-0.9
3,643,736	-		CCNA_03480	0.47	+2.2
3,643,759	+				+3.0
3,643,767	-		CCNA_03480	0.50	-1.8
3,643,804	+		CCNA_03480	0.55	-2.1
3,643,810	-		CCNA_03480	0.55	-0.3
3,643,810	-		CCNA_03480	0.55	-1.0
3,643,810	-		CCNA_03480	0.55	+1.4
3,643,810	-		CCNA_03480	0.55	+0.6
3,643,831	-		CCNA_03480	0.58	-0.3
3,643,898	+		CCNA_03480	0.66	-1.6
3,643,905	+		CCNA_03480	0.66	-1.2
3,643,905	+		CCNA_03480	0.66	+1.0
3,643,905	+		CCNA_03480	0.66	+0.4
3,643,905	-		CCNA_03480	0.66	-1.2
3,643,913	-		CCNA_03480	0.67	+0.2
3,643,913	-		CCNA_03480	0.67	-0.7
3,643,936	-		CCNA_03480	0.70	-0.4
3,643,936	-		CCNA_03480	0.70	-0.1
3,643,936	-		CCNA_03480	0.70	-1.1
3,643,974	+		CCNA_03480	0.75	-0.5
3,643,974	+		CCNA_03480	0.75	+1.5
3,643,982	-		CCNA_03480	0.75	-0.6
3,643,982	-		CCNA_03480	0.75	+1.0
3,643,985	+		CCNA_03480	0.76	+0.0
3,643,992	-		CCNA_03480	0.77	-1.0
3,644,007	-		CCNA_03480	0.78	-0.8
3,644,021	+		CCNA_03480	0.80	-0.0
3,644,021	+		CCNA_03480	0.80	-0.4
3,644,021	+		CCNA_03480	0.80	-0.0
3,644,021	+		CCNA_03480	0.80	-0.5
3,644,021	+		CCNA_03480	0.80	+0.6
3,644,021	+		CCNA_03480	0.80	+0.7
3,644,029	-		CCNA_03480	0.81	-0.5
3,644,029	-		CCNA_03480	0.81	-2.1
3,644,029	-		CCNA_03480	0.81	-1.2
3,644,029	-		CCNA_03480	0.81	+0.3
3,644,031	+		CCNA_03480	0.81	-0.8
3,644,037	+		CCNA_03480	0.82	-0.6
3,644,039	-		CCNA_03480	0.82	-1.6
3,644,092	+		CCNA_03480	0.88	-0.5
3,644,149	+				-1.6
3,644,149	+				+0.3
3,644,149	+				+0.7
3,644,157	-				+0.0
3,644,157	-				+1.2
3,644,157	-				+1.8
3,644,157	-				-1.6
3,644,186	+				-1.2
3,644,186	+				+0.3
3,644,190	+				-1.1
3,644,193	-				-0.7
3,644,219	+				-1.2
3,644,219	+				-0.3
3,644,227	-				+0.2
3,644,246	+				+0.4
3,644,327	+		CCNA_03481	0.10	+1.9
3,644,327	+		CCNA_03481	0.10	-0.6
3,644,327	+		CCNA_03481	0.10	+2.1
3,644,327	+		CCNA_03481	0.10	+0.3
3,644,335	-		CCNA_03481	0.12	+0.9
3,644,335	-		CCNA_03481	0.12	-0.9
3,644,337	+		CCNA_03481	0.13	-0.2
3,644,346	-		CCNA_03481	0.15	+2.2
3,644,431	+		CCNA_03481	0.33	-0.3
3,644,447	-		CCNA_03481	0.37	-1.6
3,644,447	-		CCNA_03481	0.37	-0.5
3,644,465	-		CCNA_03481	0.41	+0.3
3,644,471	-		CCNA_03481	0.42	+1.6
3,644,475	-		CCNA_03481	0.43	+0.2
3,644,505	+		CCNA_03481	0.50	-0.7
3,644,513	-		CCNA_03481	0.51	-0.8
3,644,518	+		CCNA_03481	0.53	+0.7
3,644,526	-		CCNA_03481	0.54	-0.0
3,644,541	-		CCNA_03481	0.58	-0.6
3,644,569	-		CCNA_03481	0.64	+0.1
3,644,577	+		CCNA_03481	0.66	+1.0
3,644,577	+		CCNA_03481	0.66	+2.2
3,644,577	+		CCNA_03481	0.66	+0.4
3,644,577	+				+1.0
3,644,577	+		CCNA_03481	0.66	+1.5
3,644,585	-		CCNA_03481	0.67	-0.8
3,644,585	-		CCNA_03481	0.67	-0.3
3,644,585	-		CCNA_03481	0.67	-0.5
3,644,585	-		CCNA_03481	0.67	+1.6
3,644,585	-		CCNA_03481	0.67	-0.1
3,644,585	-		CCNA_03481	0.67	-1.0
3,644,604	+		CCNA_03481	0.72	+0.4
3,644,700	+				+2.4
3,644,701	+				+1.5
3,644,701	+				+1.7
3,644,701	+				+2.2
3,644,712	+				+1.5
3,644,712	+				+2.0
3,644,762	+				+1.8
3,644,772	+				+4.0
3,644,799	+				-0.3
3,644,820	-				+2.5
3,644,821	-				+1.9
3,644,821	-				+2.6
3,644,828	-				+0.8
3,644,861	+				-0.1
3,644,895	-		CCNA_03482	0.10	-0.0
3,644,969	+		CCNA_03482	0.20	-0.4
3,644,987	-		CCNA_03482	0.23	+0.1
3,645,015	-		CCNA_03482	0.26	+0.8
3,645,018	+		CCNA_03482	0.27	-0.5
3,645,026	-		CCNA_03482	0.28	+2.1
3,645,040	+		CCNA_03482	0.30	+0.8
3,645,048	-		CCNA_03482	0.31	+1.3
3,645,078	-		CCNA_03482	0.35	-0.0
3,645,121	-				+1.4
3,645,123	+		CCNA_03482	0.40	-1.0
3,645,131	-		CCNA_03482	0.41	+1.1
3,645,131	-		CCNA_03482	0.41	+1.8
3,645,131	-		CCNA_03482	0.41	+0.8
3,645,131	-		CCNA_03482	0.41	+0.3
3,645,131	-		CCNA_03482	0.41	+0.6
3,645,131	-		CCNA_03482	0.41	-2.0
3,645,131	-		CCNA_03482	0.41	+0.2
3,645,131	-		CCNA_03482	0.41	+0.9
3,645,169	+		CCNA_03482	0.46	-0.3
3,645,177	-		CCNA_03482	0.48	-0.3
3,645,199	-		CCNA_03482	0.50	-0.0
3,645,230	-		CCNA_03482	0.54	+0.4
3,645,270	-		CCNA_03482	0.60	-1.7
3,645,270	-		CCNA_03482	0.60	+0.6
3,645,280	-		CCNA_03482	0.61	+0.1
3,645,280	-		CCNA_03482	0.61	+0.0
3,645,281	-		CCNA_03482	0.61	-0.0
3,645,296	+		CCNA_03482	0.63	-0.5
3,645,296	+		CCNA_03482	0.63	+0.1
3,645,296	+		CCNA_03482	0.63	+0.3
3,645,304	-		CCNA_03482	0.64	+0.4
3,645,312	-		CCNA_03482	0.65	+1.1
3,645,431	+		CCNA_03482	0.81	+2.0
3,645,471	+		CCNA_03482	0.86	+0.1
3,645,489	-		CCNA_03482	0.88	-0.7
3,645,502	-				+1.3
3,645,510	+				-0.3
3,645,554	+				-0.4
3,645,571	-				-0.4
3,645,583	+				-0.3
3,645,583	+				+0.5
3,645,591	-				+1.5
3,645,591	-				+1.5
3,645,606	+				+1.0
3,645,618	+				+1.6
3,645,626	-				-0.5
3,645,626	-				+1.2
3,645,636	-				+1.0
3,645,636	-				+0.7
3,645,636	-				+1.5
3,645,636	-				+0.6
3,645,720	+		CCNA_03483	0.16	+1.9
3,645,720	+		CCNA_03483	0.16	+0.4
3,645,723	-		CCNA_03483	0.16	-1.4