Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03421

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,585,545	-		CCNA_03419	0.42	-1.3
3,585,551	-		CCNA_03419	0.43	-2.0
3,585,580	+		CCNA_03419	0.49	+0.7
3,585,587	+		CCNA_03419	0.50	+2.3
3,585,588	-		CCNA_03419	0.50	+1.0
3,585,600	+		CCNA_03419	0.53	+1.7
3,585,600	+		CCNA_03419	0.53	-0.5
3,585,608	-		CCNA_03419	0.54	-0.5
3,585,632	-		CCNA_03419	0.59	-0.7
3,585,641	+		CCNA_03419	0.61	+0.5
3,585,645	+		CCNA_03419	0.62	+0.7
3,585,647	-		CCNA_03419	0.62	-1.7
3,585,650	+		CCNA_03419	0.63	+0.3
3,585,650	+		CCNA_03419	0.63	-1.9
3,585,650	+		CCNA_03419	0.63	+2.1
3,585,650	+		CCNA_03419	0.63	-1.3
3,585,650	+		CCNA_03419	0.63	+1.3
3,585,658	-		CCNA_03419	0.64	-0.8
3,585,658	-		CCNA_03419	0.64	-1.3
3,585,658	-		CCNA_03419	0.64	-1.7
3,585,658	-		CCNA_03419	0.64	+1.0
3,585,691	+		CCNA_03419	0.71	-1.7
3,585,748	+		CCNA_03419	0.82	+0.2
3,585,761	-		CCNA_03419	0.85	+2.0
3,585,774	+		CCNA_03419	0.87	-0.8
3,585,885	+				+4.4
3,585,885	+				+3.7
3,585,886	+		CCNA_03420	0.10	+4.3
3,585,886	+		CCNA_03420	0.10	+3.9
3,585,886	+		CCNA_03420	0.10	+4.8
3,585,886	+		CCNA_03420	0.10	+4.7
3,585,886	+		CCNA_03420	0.10	+4.5
3,585,900	+		CCNA_03420	0.12	+4.2
3,585,910	+		CCNA_03420	0.14	+4.6
3,585,920	+		CCNA_03420	0.16	+4.7
3,585,920	+		CCNA_03420	0.16	+4.7
3,585,941	-		CCNA_03420	0.19	+0.7
3,585,946	+		CCNA_03420	0.20	+4.1
3,585,966	+		CCNA_03420	0.23	+4.6
3,586,000	+		CCNA_03420	0.29	+2.9
3,586,000	+		CCNA_03420	0.29	+2.8
3,586,008	-		CCNA_03420	0.30	-0.0
3,586,022	+		CCNA_03420	0.33	+4.8
3,586,022	+		CCNA_03420	0.33	+4.4
3,586,033	+		CCNA_03420	0.34	+4.1
3,586,046	+		CCNA_03420	0.37	+4.7
3,586,154	+		CCNA_03420	0.55	+0.4
3,586,154	+		CCNA_03420	0.55	+1.1
3,586,198	+		CCNA_03420	0.62	+3.9
3,586,206	+		CCNA_03420	0.63	+4.5
3,586,234	+		CCNA_03420	0.68	+3.3
3,586,260	+		CCNA_03420	0.72	+0.5
3,586,268	-		CCNA_03420	0.74	-2.1
3,586,278	+		CCNA_03420	0.75	+4.2
3,586,287	-		CCNA_03420	0.77	-0.9
3,586,319	+		CCNA_03420	0.82	+2.6
3,586,371	+				+4.2
3,586,420	+				-0.0
3,586,420	+				+1.3
3,586,420	+				-0.7
3,586,428	-				+0.2
3,586,428	-				+0.9
3,586,461	+				-0.9
3,586,469	-				+0.3
3,586,469	-				-0.2
3,586,469	-				+0.3
3,586,494	+				+0.1
3,586,560	+				+1.7
3,586,585	-				+1.2
3,586,585	-				+1.4
3,586,585	-				+0.9
3,586,595	-				+0.8
3,586,597	+				-0.6
3,586,597	+				+1.4
3,586,605	-				+1.5
3,586,628	+				-1.5
3,586,755	-		CCNA_03421	0.16	+0.1
3,586,764	+		CCNA_03421	0.17	-0.3
3,586,787	-		CCNA_03421	0.18	+0.8
3,586,795	-		CCNA_03421	0.19	+2.8
3,586,813	+		CCNA_03421	0.20	+0.5
3,586,813	+		CCNA_03421	0.20	+0.9
3,586,821	-		CCNA_03421	0.21	+0.6
3,586,852	-		CCNA_03421	0.23	+0.5
3,586,861	+		CCNA_03421	0.24	-0.1
3,586,869	-		CCNA_03421	0.24	+0.1
3,586,869	-		CCNA_03421	0.24	+1.2
3,586,873	+		CCNA_03421	0.25	-0.5
3,586,878	+		CCNA_03421	0.25	+0.4
3,586,878	+		CCNA_03421	0.25	-0.8
3,586,881	-		CCNA_03421	0.25	+0.8
3,586,904	+				+1.1
3,586,904	+		CCNA_03421	0.27	+2.1
3,586,904	+		CCNA_03421	0.27	-0.4
3,586,904	+		CCNA_03421	0.27	+2.1
3,586,904	+		CCNA_03421	0.27	-0.6
3,586,912	-		CCNA_03421	0.28	+1.3
3,586,912	-		CCNA_03421	0.28	-0.6
3,586,912	-		CCNA_03421	0.28	+0.5
3,586,912	-		CCNA_03421	0.28	+1.4
3,586,912	-		CCNA_03421	0.28	+0.2
3,586,914	+		CCNA_03421	0.28	-1.3
3,586,922	-		CCNA_03421	0.28	-0.5
3,586,922	-		CCNA_03421	0.28	-0.3
3,586,922	-		CCNA_03421	0.28	-0.9
3,586,924	+		CCNA_03421	0.29	-1.2
3,586,934	-		CCNA_03421	0.29	+1.7
3,586,948	+		CCNA_03421	0.30	-1.0
3,586,951	-		CCNA_03421	0.31	-0.6
3,586,951	-		CCNA_03421	0.31	+1.0
3,587,010	+		CCNA_03421	0.35	-1.5
3,587,048	+		CCNA_03421	0.38	-0.8
3,587,050	-		CCNA_03421	0.38	-0.9
3,587,086	+		CCNA_03421	0.40	-1.3
3,587,094	-		CCNA_03421	0.41	-1.0
3,587,094	-		CCNA_03421	0.41	+0.8
3,587,094	-		CCNA_03421	0.41	+2.0
3,587,128	-		CCNA_03421	0.44	+0.7
3,587,153	+		CCNA_03421	0.45	-0.6
3,587,153	+		CCNA_03421	0.45	+0.6
3,587,161	+		CCNA_03421	0.46	-1.4
3,587,177	-		CCNA_03421	0.47	+3.1
3,587,177	-		CCNA_03421	0.47	+1.6
3,587,210	+		CCNA_03421	0.50	-0.9
3,587,210	+		CCNA_03421	0.50	-1.7
3,587,229	+		CCNA_03421	0.51	+0.3
3,587,237	+		CCNA_03421	0.52	-0.0
3,587,237	-		CCNA_03421	0.52	+0.1
3,587,258	+		CCNA_03421	0.53	+0.3
3,587,270	+		CCNA_03421	0.54	+0.4
3,587,278	-		CCNA_03421	0.55	-0.5
3,587,286	+		CCNA_03421	0.55	+1.9
3,587,305	+		CCNA_03421	0.57	-0.1
3,587,313	-		CCNA_03421	0.57	+0.4
3,587,313	-		CCNA_03421	0.57	-0.8
3,587,313	-		CCNA_03421	0.57	-1.0
3,587,337	+		CCNA_03421	0.59	-0.7
3,587,359	-		CCNA_03421	0.61	+1.4
3,587,375	+		CCNA_03421	0.62	+0.6
3,587,383	-		CCNA_03421	0.62	+0.3
3,587,383	-		CCNA_03421	0.62	+1.0
3,587,383	-		CCNA_03421	0.62	+0.3
3,587,383	-		CCNA_03421	0.62	+0.4
3,587,414	-		CCNA_03421	0.65	-0.1
3,587,416	+		CCNA_03421	0.65	-0.8
3,587,463	+		CCNA_03421	0.68	-0.5
3,587,496	-		CCNA_03421	0.71	-0.2
3,587,499	+		CCNA_03421	0.71	-0.0
3,587,602	+		CCNA_03421	0.79	-1.7
3,587,610	-		CCNA_03421	0.79	+0.1
3,587,673	-		CCNA_03421	0.84	+1.1
3,587,683	+		CCNA_03421	0.85	+1.5
3,587,683	+		CCNA_03421	0.85	-1.4
3,587,683	+		CCNA_03421	0.85	+0.2
3,587,683	+		CCNA_03421	0.85	+0.3
3,587,691	-		CCNA_03421	0.85	+0.7
3,587,691	-		CCNA_03421	0.85	+0.9
3,587,691	-		CCNA_03421	0.85	+0.8
3,587,717	-		CCNA_03421	0.87	-0.4
3,587,731	+		CCNA_03421	0.88	-0.1
3,587,731	+		CCNA_03421	0.88	-0.8
3,587,731	+		CCNA_03421	0.88	-1.0
3,587,732	+		CCNA_03421	0.88	-0.2
3,587,732	+		CCNA_03421	0.88	+0.7
3,587,789	+				-0.3
3,587,789	+				+0.8
3,587,797	-				+0.6
3,587,802	-				+0.1
3,587,826	+				-0.1
3,587,897	+				-0.1
3,587,897	+				-1.2
3,587,938	-				+1.3
3,587,938	-				+1.9
3,587,940	-				+0.4
3,587,976	+				+0.2
3,587,976	+				-0.7
3,587,976	+				-0.9
3,587,984	-				-1.8
3,588,010	+				+0.9
3,588,010	+				-0.6
3,588,018	-				-0.0
3,588,018	-				-0.0
3,588,061	+				+0.1
3,588,097	+		CCNA_03422	0.11	+1.0
3,588,105	-		CCNA_03422	0.12	+0.7
3,588,121	+		CCNA_03422	0.12	-0.4
3,588,128	+		CCNA_03422	0.13	-1.0
3,588,129	-		CCNA_03422	0.13	-0.3
3,588,136	-		CCNA_03422	0.13	+1.1
3,588,136	-		CCNA_03422	0.13	+0.5
3,588,151	-		CCNA_03422	0.14	+0.3
3,588,151	-		CCNA_03422	0.14	+0.1
3,588,151	-		CCNA_03422	0.14	+0.5
3,588,164	+		CCNA_03422	0.15	+1.1
3,588,164	+		CCNA_03422	0.15	+1.7
3,588,164	+		CCNA_03422	0.15	-1.5
3,588,172	-		CCNA_03422	0.15	+1.0
3,588,172	-		CCNA_03422	0.15	+0.5
3,588,225	+		CCNA_03422	0.18	-0.0
3,588,225	+		CCNA_03422	0.18	-1.0
3,588,231	+		CCNA_03422	0.19	-1.8
3,588,233	-		CCNA_03422	0.19	-1.8
3,588,239	+		CCNA_03422	0.19	-1.1
3,588,247	-		CCNA_03422	0.19	+0.1
3,588,254	+		CCNA_03422	0.20	+0.5
3,588,257	-		CCNA_03422	0.20	+0.8
3,588,262	-		CCNA_03422	0.20	+1.4
3,588,263	+		CCNA_03422	0.20	+0.5
3,588,264	+		CCNA_03422	0.20	-0.6
3,588,339	-		CCNA_03422	0.25	+0.1
3,588,341	+		CCNA_03422	0.25	+0.0
3,588,373	-		CCNA_03422	0.26	+0.2
3,588,383	-		CCNA_03422	0.27	-0.2
3,588,409	+		CCNA_03422	0.28	+0.2
3,588,411	-		CCNA_03422	0.29	-0.1
3,588,417	-		CCNA_03422	0.29	-0.5
3,588,417	-		CCNA_03422	0.29	+1.6
3,588,417	-		CCNA_03422	0.29	+0.4
3,588,417	-		CCNA_03422	0.29	-1.1
3,588,422	-		CCNA_03422	0.29	+0.7
3,588,448	+		CCNA_03422	0.31	+1.5
3,588,448	+		CCNA_03422	0.31	-0.3
3,588,448	+		CCNA_03422	0.31	-0.1
3,588,448	+		CCNA_03422	0.31	-1.5
3,588,448	+		CCNA_03422	0.31	+0.4
3,588,448	+		CCNA_03422	0.31	+0.6
3,588,448	+		CCNA_03422	0.31	-0.9
3,588,448	+		CCNA_03422	0.31	+0.1
3,588,456	-		CCNA_03422	0.31	-1.4
3,588,456	-		CCNA_03422	0.31	+1.2
3,588,456	-		CCNA_03422	0.31	+0.3
3,588,456	-		CCNA_03422	0.31	-0.8
3,588,456	-		CCNA_03422	0.31	+0.0
3,588,456	-		CCNA_03422	0.31	+1.3
3,588,456	-		CCNA_03422	0.31	+1.0
3,588,456	-		CCNA_03422	0.31	-0.2
3,588,478	-		CCNA_03422	0.32	+1.5
3,588,481	-		CCNA_03422	0.32	+1.0
3,588,501	-		CCNA_03422	0.34	-0.2
3,588,506	+		CCNA_03422	0.34	+0.1
3,588,506	+		CCNA_03422	0.34	-0.4
3,588,506	-		CCNA_03422	0.34	-1.1
3,588,514	-		CCNA_03422	0.34	-1.2
3,588,514	-		CCNA_03422	0.34	+0.9
3,588,514	-		CCNA_03422	0.34	+0.1
3,588,529	+		CCNA_03422	0.35	+0.8
3,588,529	+		CCNA_03422	0.35	-0.1
3,588,529	+		CCNA_03422	0.35	+0.5
3,588,529	+		CCNA_03422	0.35	-0.4
3,588,529	+		CCNA_03422	0.35	-1.5
3,588,529	+		CCNA_03422	0.35	-1.2
3,588,529	+		CCNA_03422	0.35	+1.3
3,588,529	+		CCNA_03422	0.35	-0.1
3,588,537	-		CCNA_03422	0.36	-0.4
3,588,537	-		CCNA_03422	0.36	+0.3
3,588,537	-		CCNA_03422	0.36	-1.4
3,588,537	-		CCNA_03422	0.36	-1.3
3,588,559	-		CCNA_03422	0.37	+1.2
3,588,559	-		CCNA_03422	0.37	+0.2
3,588,608	-		CCNA_03422	0.40	-1.9
3,588,652	-		CCNA_03422	0.42	-1.4
3,588,682	-		CCNA_03422	0.44	+1.9
3,588,707	-		CCNA_03422	0.45	-0.0
3,588,709	+		CCNA_03422	0.45	-0.8
3,588,717	-		CCNA_03422	0.46	+1.1
3,588,729	-		CCNA_03422	0.46	+1.7
3,588,758	+		CCNA_03422	0.48	-0.0
3,588,761	-		CCNA_03422	0.48	-0.6
3,588,761	-		CCNA_03422	0.48	-1.6
3,588,785	+		CCNA_03422	0.49	+0.6
3,588,785	+		CCNA_03422	0.49	-0.6
3,588,793	-		CCNA_03422	0.50	+0.9
3,588,803	+		CCNA_03422	0.50	-1.4
3,588,806	+		CCNA_03422	0.51	-0.6
3,588,806	+		CCNA_03422	0.51	-0.0
3,588,812	+		CCNA_03422	0.51	-0.5
3,588,814	-		CCNA_03422	0.51	-1.1
3,588,854	-		CCNA_03422	0.53	-1.4
3,588,856	+		CCNA_03422	0.53	-0.3
3,588,856	+		CCNA_03422	0.53	-1.5
3,588,857	+		CCNA_03422	0.53	-1.4
3,588,863	+		CCNA_03422	0.54	+0.4
3,588,865	-		CCNA_03422	0.54	+0.3
3,588,871	-		CCNA_03422	0.54	+0.4
3,588,876	-		CCNA_03422	0.55	+0.6
3,588,881	-		CCNA_03422	0.55	-0.1
3,588,881	-		CCNA_03422	0.55	+3.7