Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03400

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,569,157	+		CCNA_03398	0.47	-1.2
3,569,157	+		CCNA_03398	0.47	-0.9
3,569,165	-		CCNA_03398	0.48	+0.4
3,569,165	-		CCNA_03398	0.48	+0.3
3,569,165	-		CCNA_03398	0.48	+0.5
3,569,165	-		CCNA_03398	0.48	+0.5
3,569,224	+		CCNA_03398	0.59	+0.0
3,569,232	-		CCNA_03398	0.60	+0.1
3,569,232	-		CCNA_03398	0.60	-0.5
3,569,234	+		CCNA_03398	0.61	-1.0
3,569,237	-		CCNA_03398	0.61	-2.0
3,569,246	+		CCNA_03398	0.63	-0.0
3,569,259	-		CCNA_03398	0.65	-0.8
3,569,259	-		CCNA_03398	0.65	-0.1
3,569,259	-		CCNA_03398	0.65	+1.5
3,569,259	-		CCNA_03398	0.65	-0.5
3,569,259	-		CCNA_03398	0.65	-0.3
3,569,271	+		CCNA_03398	0.67	-1.0
3,569,274	-		CCNA_03398	0.68	+0.9
3,569,278	-		CCNA_03398	0.69	+0.7
3,569,278	-		CCNA_03398	0.69	-0.3
3,569,279	-		CCNA_03398	0.69	+0.0
3,569,346	+		CCNA_03398	0.81	+0.3
3,569,346	+		CCNA_03398	0.81	-0.7
3,569,381	+				-0.6
3,569,382	-				+0.2
3,569,382	-				-0.1
3,569,392	+				+0.2
3,569,402	+				+0.8
3,569,402	+				+0.7
3,569,410	-				-0.6
3,569,410	-				+0.9
3,569,410	-				-0.1
3,569,412	-				-0.6
3,569,418	-				+0.3
3,570,040	-				+1.4
3,570,092	-				+0.4
3,570,107	-				+1.3
3,570,114	+				+0.9
3,570,197	-		CCNA_03400	0.42	+1.0
3,570,221	-		CCNA_03400	0.56	+0.2
3,570,223	+		CCNA_03400	0.57	+1.5
3,570,234	+		CCNA_03400	0.63	+2.1
3,570,350	-				+3.9
3,570,383	-				+4.2
3,570,414	-				+3.6
3,570,427	+				+0.6
3,570,441	-				+3.3
3,570,441	-				+3.2
3,570,519	-		CCNA_03401	0.20	+3.4
3,570,548	+		CCNA_03401	0.24	+1.5
3,570,548	+		CCNA_03401	0.24	-0.2
3,570,556	-		CCNA_03401	0.25	+2.5
3,570,556	-		CCNA_03401	0.25	+3.0
3,570,559	+		CCNA_03401	0.25	+1.1
3,570,609	-		CCNA_03401	0.32	+2.1
3,570,609	-		CCNA_03401	0.32	+0.7
3,570,609	-		CCNA_03401	0.32	+1.5
3,570,628	-		CCNA_03401	0.35	+0.8
3,570,651	-		CCNA_03401	0.38	+1.7
3,570,651	-		CCNA_03401	0.38	+2.5
3,570,716	-		CCNA_03401	0.47	+0.4
3,570,837	-		CCNA_03401	0.64	+1.3
3,570,849	+		CCNA_03401	0.66	+0.2
3,570,905	-		CCNA_03401	0.74	-0.1
3,571,139	-				+0.3
3,571,158	-				+1.9
3,571,158	-				+2.7
3,571,216	-				-0.1
3,571,216	-				-0.1
3,571,222	+				+0.2
3,571,256	-				-0.3
3,571,264	+				+0.2