Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03396

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,565,897	-		CCNA_03394	0.45	-0.4
3,565,897	-		CCNA_03394	0.45	+0.3
3,565,907	-		CCNA_03394	0.47	+1.0
3,565,909	+		CCNA_03394	0.47	+1.4
3,565,928	+		CCNA_03394	0.50	+1.3
3,565,928	+		CCNA_03394	0.50	-0.3
3,565,934	+		CCNA_03394	0.51	+0.3
3,565,936	-		CCNA_03394	0.51	+2.2
3,565,941	-		CCNA_03394	0.52	+2.0
3,565,990	+		CCNA_03394	0.58	+1.1
3,565,992	+		CCNA_03394	0.59	+1.3
3,565,992	+		CCNA_03394	0.59	+1.2
3,566,000	-		CCNA_03394	0.60	+0.3
3,566,000	-		CCNA_03394	0.60	-1.9
3,566,000	-		CCNA_03394	0.60	-0.4
3,566,006	-		CCNA_03394	0.61	-0.7
3,566,104	+		CCNA_03394	0.74	+2.1
3,566,104	+		CCNA_03394	0.74	+0.3
3,566,109	+		CCNA_03394	0.75	+0.2
3,566,115	+		CCNA_03394	0.76	+1.3
3,566,115	+		CCNA_03394	0.76	+0.4
3,566,116	+		CCNA_03394	0.76	+0.8
3,566,117	-		CCNA_03394	0.76	+0.1
3,566,117	-		CCNA_03394	0.76	-0.7
3,566,124	-		CCNA_03394	0.77	-0.8
3,566,124	-		CCNA_03394	0.77	+2.2
3,566,124	-		CCNA_03394	0.77	-0.1
3,566,176	+		CCNA_03394	0.84	+1.4
3,566,176	+		CCNA_03394	0.84	+1.2
3,566,176	+		CCNA_03394	0.84	+1.5
3,566,204	+		CCNA_03394	0.88	+0.6
3,566,214	-		CCNA_03394	0.90	-0.6
3,566,233	+				+0.8
3,566,267	-				+1.2
3,566,267	-				-1.1
3,566,276	+				-1.6
3,566,279	+				-3.4
3,566,279	-				-0.5
3,566,361	+				+0.1
3,566,369	-				-0.8
3,566,419	+				+1.4
3,566,420	+				+1.7
3,566,425	-				-0.2
3,566,427	-				+0.7
3,566,427	-				-0.2
3,566,430	-				-2.0
3,566,470	-		CCNA_03395	0.11	-0.9
3,566,518	+		CCNA_03395	0.25	+0.5
3,566,518	-		CCNA_03395	0.25	+1.4
3,566,537	-		CCNA_03395	0.30	-1.4
3,566,556	+		CCNA_03395	0.35	+1.5
3,566,557	+		CCNA_03395	0.36	+2.0
3,566,617	+		CCNA_03395	0.52	+1.4
3,566,617	+		CCNA_03395	0.52	+0.8
3,566,617	+		CCNA_03395	0.52	+0.9
3,566,617	+		CCNA_03395	0.52	+1.2
3,566,617	+		CCNA_03395	0.52	+1.1
3,566,617	+		CCNA_03395	0.52	+1.1
3,566,617	+		CCNA_03395	0.52	+2.3
3,566,625	-		CCNA_03395	0.54	-0.0
3,566,625	-		CCNA_03395	0.54	-0.1
3,566,625	-		CCNA_03395	0.54	-1.1
3,566,636	+		CCNA_03395	0.57	+1.5
3,566,655	+		CCNA_03395	0.63	-0.6
3,566,655	+		CCNA_03395	0.63	+2.0
3,566,663	-		CCNA_03395	0.65	-0.2
3,566,663	-		CCNA_03395	0.65	-1.0
3,566,663	-		CCNA_03395	0.65	+0.7
3,566,664	+		CCNA_03395	0.65	+1.7
3,566,670	-		CCNA_03395	0.67	-0.2
3,566,686	+		CCNA_03395	0.71	+1.3
3,566,686	+		CCNA_03395	0.71	+3.0
3,566,686	+		CCNA_03395	0.71	+1.8
3,566,709	-		CCNA_03395	0.78	-0.4
3,566,733	+		CCNA_03395	0.84	+1.8
3,566,733	+		CCNA_03395	0.84	+1.1
3,566,733	+		CCNA_03395	0.84	+0.8
3,566,741	-		CCNA_03395	0.87	-0.3
3,566,741	-		CCNA_03395	0.87	-0.1
3,566,741	-		CCNA_03395	0.87	+0.3
3,566,741	-		CCNA_03395	0.87	+3.0
3,566,767	+				+0.8
3,566,794	-				-0.1
3,566,801	-				-0.3
3,566,801	-				-2.5
3,566,801	-				+1.3
3,566,821	+				+0.9
3,566,821	+				+0.4
3,566,829	-				+1.4
3,566,829	-				+0.8
3,566,847	-				-1.7
3,566,861	-				+0.0
3,566,861	-				-2.1
3,566,880	+				+4.0
3,566,888	-				-0.2
3,566,895	+				-0.2
3,566,900	+				+0.7
3,566,943	-				-1.2
3,566,948	+				-0.7
3,566,956	-				-0.1
3,566,957	+				+1.1
3,566,998	-				-1.7
3,567,168	-		CCNA_03396	0.18	-1.2
3,567,168	-		CCNA_03396	0.18	-0.9
3,567,168	-		CCNA_03396	0.18	-0.5
3,567,175	-		CCNA_03396	0.18	+0.3
3,567,175	-		CCNA_03396	0.18	-0.7
3,567,175	-		CCNA_03396	0.18	-1.0
3,567,225	+		CCNA_03396	0.21	+0.7
3,567,235	+		CCNA_03396	0.22	+0.7
3,567,235	+		CCNA_03396	0.22	-1.2
3,567,235	+		CCNA_03396	0.22	+0.6
3,567,240	+		CCNA_03396	0.22	+0.8
3,567,241	+		CCNA_03396	0.22	+1.3
3,567,243	-		CCNA_03396	0.22	-1.3
3,567,243	-		CCNA_03396	0.22	-1.4
3,567,243	-		CCNA_03396	0.22	-1.0
3,567,243	-		CCNA_03396	0.22	+0.5
3,567,243	-		CCNA_03396	0.22	+0.9
3,567,279	-		CCNA_03396	0.25	-1.5
3,567,279	-		CCNA_03396	0.25	-0.5
3,567,279	-		CCNA_03396	0.25	-2.4
3,567,279	-		CCNA_03396	0.25	+0.1
3,567,306	+		CCNA_03396	0.26	-0.1
3,567,306	+		CCNA_03396	0.26	+0.9
3,567,329	+		CCNA_03396	0.27	+1.3
3,567,340	+		CCNA_03396	0.28	+0.7
3,567,347	-		CCNA_03396	0.28	+0.0
3,567,373	+		CCNA_03396	0.30	+1.1
3,567,389	+		CCNA_03396	0.31	-0.6
3,567,400	+		CCNA_03396	0.32	+0.1
3,567,419	+		CCNA_03396	0.33	-0.4
3,567,427	-		CCNA_03396	0.33	+0.7
3,567,440	+		CCNA_03396	0.34	+0.6
3,567,445	+		CCNA_03396	0.34	+0.8
3,567,445	+		CCNA_03396	0.34	+1.4
3,567,445	+		CCNA_03396	0.34	-0.1
3,567,445	+		CCNA_03396	0.34	+0.6
3,567,445	+		CCNA_03396	0.34	+2.0
3,567,445	+		CCNA_03396	0.34	+0.3
3,567,445	+		CCNA_03396	0.34	+1.0
3,567,445	+		CCNA_03396	0.34	+1.8
3,567,453	-		CCNA_03396	0.35	+0.8
3,567,453	-		CCNA_03396	0.35	-1.0
3,567,453	-		CCNA_03396	0.35	-0.0
3,567,453	-		CCNA_03396	0.35	-0.5
3,567,453	-		CCNA_03396	0.35	-0.6
3,567,453	-		CCNA_03396	0.35	+0.0
3,567,453	-		CCNA_03396	0.35	-0.8
3,567,453	-		CCNA_03396	0.35	-1.1
3,567,453	-		CCNA_03396	0.35	-0.2
3,567,453	-		CCNA_03396	0.35	-0.1
3,567,453	-		CCNA_03396	0.35	-2.5
3,567,453	-		CCNA_03396	0.35	-0.7
3,567,453	-		CCNA_03396	0.35	+0.5
3,567,453	-		CCNA_03396	0.35	-0.8
3,567,453	-		CCNA_03396	0.35	-0.8
3,567,453	-		CCNA_03396	0.35	-3.0
3,567,455	+		CCNA_03396	0.35	-1.0
3,567,455	+		CCNA_03396	0.35	+1.2
3,567,491	-		CCNA_03396	0.37	-1.0
3,567,499	-		CCNA_03396	0.37	-1.0
3,567,499	-		CCNA_03396	0.37	-0.4
3,567,525	+		CCNA_03396	0.39	+0.9
3,567,533	-		CCNA_03396	0.39	-0.7
3,567,557	+		CCNA_03396	0.41	+0.4
3,567,595	-		CCNA_03396	0.43	+0.5
3,567,630	+		CCNA_03396	0.45	+1.2
3,567,630	+		CCNA_03396	0.45	-0.2
3,567,660	+		CCNA_03396	0.47	+0.4
3,567,660	+		CCNA_03396	0.47	-1.5
3,567,660	+		CCNA_03396	0.47	-0.1
3,567,660	+		CCNA_03396	0.47	-1.7
3,567,660	+		CCNA_03396	0.47	-0.4
3,567,660	+		CCNA_03396	0.47	-0.6
3,567,663	-		CCNA_03396	0.47	-0.5
3,567,668	-		CCNA_03396	0.47	-0.6
3,567,668	-		CCNA_03396	0.47	-1.2
3,567,668	-		CCNA_03396	0.47	-0.4
3,567,668	-		CCNA_03396	0.47	+1.5
3,567,668	-		CCNA_03396	0.47	-0.0
3,567,668	-		CCNA_03396	0.47	+0.8
3,567,668	-		CCNA_03396	0.47	+0.9
3,567,668	-		CCNA_03396	0.47	-1.0
3,567,668	-		CCNA_03396	0.47	-0.5
3,567,673	-				+2.0
3,567,746	+		CCNA_03396	0.52	+0.3
3,567,748	-		CCNA_03396	0.52	+0.4
3,567,765	+		CCNA_03396	0.53	-0.6
3,567,772	+		CCNA_03396	0.53	+0.8
3,567,780	-		CCNA_03396	0.54	-0.5
3,567,782	-		CCNA_03396	0.54	+3.4
3,567,782	-		CCNA_03396	0.54	-0.8
3,567,818	+		CCNA_03396	0.56	+1.1
3,567,861	+		CCNA_03396	0.58	-0.9
3,567,903	+		CCNA_03396	0.61	+0.0
3,567,903	+		CCNA_03396	0.61	-0.2
3,567,911	+		CCNA_03396	0.61	+2.0
3,567,914	-		CCNA_03396	0.61	-0.8
3,567,936	+		CCNA_03396	0.63	-0.5
3,567,948	+		CCNA_03396	0.63	+0.3
3,567,956	-		CCNA_03396	0.64	-0.8
3,567,974	+		CCNA_03396	0.65	+0.1
3,567,974	+		CCNA_03396	0.65	-1.0
3,567,984	+		CCNA_03396	0.65	+0.6
3,567,992	-		CCNA_03396	0.66	-1.0
3,568,009	+		CCNA_03396	0.67	+0.1
3,568,076	+		CCNA_03396	0.71	+1.7
3,568,081	+		CCNA_03396	0.71	+1.0
3,568,116	-		CCNA_03396	0.73	+0.2
3,568,126	-		CCNA_03396	0.74	+0.6
3,568,161	-		CCNA_03396	0.76	-1.2
3,568,161	-		CCNA_03396	0.76	-1.3
3,568,176	-		CCNA_03396	0.77	+2.0
3,568,291	+		CCNA_03396	0.83	+2.0
3,568,291	+		CCNA_03396	0.83	+0.3
3,568,291	+		CCNA_03396	0.83	+2.2
3,568,291	+		CCNA_03396	0.83	-0.1
3,568,291	+		CCNA_03396	0.83	+1.2
3,568,291	+		CCNA_03396	0.83	+0.6
3,568,291	+		CCNA_03396	0.83	-1.7
3,568,291	+		CCNA_03396	0.83	+1.7
3,568,291	+		CCNA_03396	0.83	+0.7
3,568,291	+		CCNA_03396	0.83	+0.3
3,568,291	+		CCNA_03396	0.83	-0.1
3,568,291	+		CCNA_03396	0.83	+0.7
3,568,299	-		CCNA_03396	0.84	+1.2
3,568,299	-		CCNA_03396	0.84	-1.8
3,568,299	-		CCNA_03396	0.84	-1.6
3,568,299	-		CCNA_03396	0.84	+0.9
3,568,299	-		CCNA_03396	0.84	-0.3
3,568,310	-		CCNA_03396	0.84	-0.4
3,568,350	-		CCNA_03396	0.87	-0.3
3,568,352	+		CCNA_03396	0.87	+0.4
3,568,356	-		CCNA_03396	0.87	-2.0
3,568,413	+				+1.9
3,568,415	+				+0.0
3,568,423	-				+1.7
3,568,460	+				+1.0
3,568,469	+				+0.1
3,568,470	+				+0.2
3,568,504	+				-1.4
3,568,522	-				+2.0
3,568,522	-				-0.1
3,568,593	-				+1.7
3,568,595	+				-0.9
3,568,595	+				-1.0
3,568,603	-				+0.4
3,568,611	-				+0.9
3,568,679	-		CCNA_03397	0.30	+0.7
3,568,754	+		CCNA_03397	0.62	+0.3
3,568,786	+		CCNA_03397	0.76	+0.2
3,568,824	-				+1.8
3,568,853	+				-0.4
3,568,862	+				+0.5
3,568,862	+				-0.5
3,568,870	-				+2.2
3,568,895	-				-2.1
3,568,902	+				-0.2
3,568,910	-				+0.8
3,568,921	+				-0.6
3,568,921	+				-0.9
3,568,921	+				-1.9
3,568,929	-				-0.7
3,568,929	-				-0.8
3,568,935	+				-1.3
3,568,935	+				-0.1
3,568,935	+				-2.3
3,568,935	+				-1.0
3,568,935	+				-1.9
3,568,935	+				-2.6
3,568,943	-				-0.1
3,568,943	-				+0.8
3,568,943	-				-1.8
3,568,943	-				+0.1
3,568,943	-				+1.0
3,568,943	-				+0.6
3,568,943	-				+0.4
3,568,962	+		CCNA_03398	0.11	-1.2
3,569,004	+		CCNA_03398	0.19	-0.6
3,569,041	-		CCNA_03398	0.26	-0.5
3,569,055	+		CCNA_03398	0.28	+0.3
3,569,094	+		CCNA_03398	0.35	+3.0
3,569,099	-		CCNA_03398	0.36	-1.1
3,569,157	+		CCNA_03398	0.47	-1.2
3,569,157	+		CCNA_03398	0.47	-0.9
3,569,165	-		CCNA_03398	0.48	+0.4
3,569,165	-		CCNA_03398	0.48	+0.3
3,569,165	-		CCNA_03398	0.48	+0.5
3,569,165	-		CCNA_03398	0.48	+0.5
3,569,224	+		CCNA_03398	0.59	+0.0
3,569,232	-		CCNA_03398	0.60	+0.1
3,569,232	-		CCNA_03398	0.60	-0.5
3,569,234	+		CCNA_03398	0.61	-1.0
3,569,237	-		CCNA_03398	0.61	-2.0
3,569,246	+		CCNA_03398	0.63	-0.0
3,569,259	-		CCNA_03398	0.65	-0.8
3,569,259	-		CCNA_03398	0.65	-0.1
3,569,259	-		CCNA_03398	0.65	+1.5
3,569,259	-		CCNA_03398	0.65	-0.5
3,569,259	-		CCNA_03398	0.65	-0.3
3,569,271	+		CCNA_03398	0.67	-1.0
3,569,274	-		CCNA_03398	0.68	+0.9
3,569,278	-		CCNA_03398	0.69	+0.7
3,569,278	-		CCNA_03398	0.69	-0.3
3,569,279	-		CCNA_03398	0.69	+0.0
3,569,346	+		CCNA_03398	0.81	+0.3
3,569,346	+		CCNA_03398	0.81	-0.7
3,569,381	+				-0.6
3,569,382	-				+0.2
3,569,382	-				-0.1
3,569,392	+				+0.2
3,569,402	+				+0.8
3,569,402	+				+0.7
3,569,410	-				-0.6
3,569,410	-				+0.9
3,569,410	-				-0.1
3,569,412	-				-0.6
3,569,418	-				+0.3