Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03391

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,562,539	-		CCNA_03389	0.59	+0.3
3,562,563	+		CCNA_03389	0.61	-1.9
3,562,564	-		CCNA_03389	0.62	-1.8
3,562,573	+		CCNA_03389	0.62	-0.1
3,562,578	+		CCNA_03389	0.63	-1.2
3,562,626	+		CCNA_03389	0.68	+0.3
3,562,626	+		CCNA_03389	0.68	+2.4
3,562,634	-		CCNA_03389	0.69	+1.0
3,562,634	-		CCNA_03389	0.69	+0.6
3,562,634	-		CCNA_03389	0.69	+0.5
3,562,730	+		CCNA_03389	0.79	-0.9
3,562,745	+		CCNA_03389	0.81	-2.5
3,562,745	+		CCNA_03389	0.81	-0.6
3,562,795	-		CCNA_03389	0.86	+1.2
3,562,822	+		CCNA_03389	0.89	+1.7
3,562,830	-				-0.1
3,562,830	-				+0.9
3,562,830	-				+0.9
3,562,830	-				-1.5
3,562,847	+				-1.2
3,562,847	+				+1.4
3,562,855	-				-0.9
3,562,873	+				+1.2
3,562,974	-				+2.0
3,562,999	-				+1.0
3,563,003	+				+1.2
3,563,003	+				-0.9
3,563,003	+				+1.3
3,563,003	+				+0.4
3,563,010	+				-1.4
3,563,011	-				-0.6
3,563,011	-				-0.7
3,563,011	-				+0.5
3,563,011	-				+2.7
3,563,011	-				-0.2
3,563,022	+				-1.0
3,563,030	-				-0.9
3,563,086	+		CCNA_03390	0.12	-1.2
3,563,130	+		CCNA_03390	0.21	-2.5
3,563,130	+		CCNA_03390	0.21	-0.9
3,563,133	-		CCNA_03390	0.22	+1.2
3,563,136	+		CCNA_03390	0.22	+1.0
3,563,138	-		CCNA_03390	0.23	+0.3
3,563,138	-		CCNA_03390	0.23	+0.4
3,563,155	+		CCNA_03390	0.26	-0.1
3,563,155	+		CCNA_03390	0.26	-0.7
3,563,155	+		CCNA_03390	0.26	+0.5
3,563,155	+		CCNA_03390	0.26	+1.5
3,563,155	+		CCNA_03390	0.26	+2.4
3,563,155	+		CCNA_03390	0.26	+0.4
3,563,158	-		CCNA_03390	0.27	-0.6
3,563,163	-		CCNA_03390	0.28	+0.3
3,563,163	-		CCNA_03390	0.28	-1.7
3,563,163	-		CCNA_03390	0.28	+1.1
3,563,163	-		CCNA_03390	0.28	-0.2
3,563,191	+		CCNA_03390	0.33	-1.3
3,563,192	-		CCNA_03390	0.34	+1.4
3,563,236	+		CCNA_03390	0.42	-0.1
3,563,236	+		CCNA_03390	0.42	-2.1
3,563,236	+		CCNA_03390	0.42	-0.7
3,563,307	-		CCNA_03390	0.56	-0.8
3,563,316	+		CCNA_03390	0.58	-0.6
3,563,316	+		CCNA_03390	0.58	+0.0
3,563,324	-		CCNA_03390	0.60	+2.2
3,563,325	-		CCNA_03390	0.60	+1.2
3,563,328	+		CCNA_03390	0.61	+1.3
3,563,328	+		CCNA_03390	0.61	+0.3
3,563,328	+		CCNA_03390	0.61	+0.9
3,563,336	-		CCNA_03390	0.62	-0.5
3,563,341	-		CCNA_03390	0.63	+1.8
3,563,350	-		CCNA_03390	0.65	-0.2
3,563,350	-		CCNA_03390	0.65	-1.0
3,563,392	+		CCNA_03390	0.73	+2.4
3,563,435	-		CCNA_03390	0.82	-1.6
3,563,500	+				-0.1
3,563,518	+				-0.5
3,563,539	+				+3.3
3,563,539	+				+3.2
3,563,548	+		CCNA_03391	0.10	+3.5
3,563,566	+		CCNA_03391	0.17	+3.4
3,563,567	+		CCNA_03391	0.18	+2.8
3,563,602	-		CCNA_03391	0.33	+0.7
3,563,611	+		CCNA_03391	0.36	+3.2
3,563,612	-		CCNA_03391	0.37	-0.9
3,563,614	-		CCNA_03391	0.38	-1.3
3,563,640	+		CCNA_03391	0.48	+4.0
3,563,640	+		CCNA_03391	0.48	+3.5
3,563,640	+		CCNA_03391	0.48	+3.4
3,563,640	+		CCNA_03391	0.48	+3.8
3,563,647	-		CCNA_03391	0.51	+2.1
3,563,648	-		CCNA_03391	0.52	-1.8
3,563,648	-		CCNA_03391	0.52	-0.9
3,563,648	-		CCNA_03391	0.52	-0.6
3,563,649	-		CCNA_03391	0.52	+0.3
3,563,670	-		CCNA_03391	0.61	+1.1
3,563,683	+		CCNA_03391	0.66	+3.2
3,563,683	+		CCNA_03391	0.66	+3.0
3,563,683	+		CCNA_03391	0.66	+3.0
3,563,683	+		CCNA_03391	0.66	+3.3
3,563,683	+		CCNA_03391	0.66	+3.5
3,563,683	+		CCNA_03391	0.66	+3.2
3,563,683	+		CCNA_03391	0.66	+3.1
3,563,683	+		CCNA_03391	0.66	+2.6
3,563,691	-				+2.8
3,563,691	-		CCNA_03391	0.70	+1.3
3,563,691	-		CCNA_03391	0.70	+0.6
3,563,691	-		CCNA_03391	0.70	+1.0
3,563,691	-		CCNA_03391	0.70	+1.2
3,563,691	-		CCNA_03391	0.70	-0.1
3,563,691	-		CCNA_03391	0.70	+0.8
3,563,691	-				+2.2
3,563,707	+		CCNA_03391	0.76	+3.5
3,563,707	+		CCNA_03391	0.76	+3.2
3,563,715	-		CCNA_03391	0.80	-0.5
3,563,744	+				-1.0
3,563,752	-				+0.6
3,563,827	+				-0.9
3,563,829	+				+1.3
3,563,834	+				+1.5
3,563,834	+				+0.4
3,563,835	-				+2.8
3,563,978	+		CCNA_03392	0.20	-1.4
3,564,038	+		CCNA_03392	0.26	+1.7
3,564,074	+		CCNA_03392	0.29	+0.7
3,564,099	+		CCNA_03392	0.31	+0.8
3,564,099	+		CCNA_03392	0.31	+1.4
3,564,099	+		CCNA_03392	0.31	-0.5
3,564,099	+		CCNA_03392	0.31	-0.5
3,564,102	-		CCNA_03392	0.31	+1.0
3,564,107	-		CCNA_03392	0.32	+1.9
3,564,160	+		CCNA_03392	0.37	+0.4
3,564,162	-		CCNA_03392	0.37	+0.3
3,564,168	-		CCNA_03392	0.38	+0.4
3,564,191	-		CCNA_03392	0.40	+0.9
3,564,316	-		CCNA_03392	0.51	-0.2
3,564,366	-		CCNA_03392	0.56	+1.3
3,564,368	+		CCNA_03392	0.56	-0.0
3,564,372	-		CCNA_03392	0.56	-0.3
3,564,378	+				+3.0
3,564,387	-		CCNA_03392	0.58	+1.8
3,564,405	-		CCNA_03392	0.59	+3.3
3,564,443	+		CCNA_03392	0.63	+2.2
3,564,444	+		CCNA_03392	0.63	+0.4
3,564,444	+		CCNA_03392	0.63	+0.5
3,564,461	-		CCNA_03392	0.65	+0.0
3,564,471	+		CCNA_03392	0.65	-1.5
3,564,522	+		CCNA_03392	0.70	+1.8
3,564,530	-		CCNA_03392	0.71	+1.7
3,564,530	-		CCNA_03392	0.71	+0.5
3,564,567	+		CCNA_03392	0.74	-0.8
3,564,575	-		CCNA_03392	0.75	+1.3
3,564,615	+		CCNA_03392	0.79	+0.1
3,564,659	-		CCNA_03392	0.83	+0.3