Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03387

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,559,508	+		CCNA_03386	0.60	+1.1
3,559,508	+		CCNA_03386	0.60	+0.6
3,559,607	+				+2.7
3,559,610	+		CCNA_03386	0.65	-0.8
3,559,647	-		CCNA_03386	0.66	+0.1
3,559,653	+		CCNA_03386	0.66	-1.6
3,559,678	+		CCNA_03386	0.68	+1.4
3,559,686	-		CCNA_03386	0.68	-0.3
3,559,696	-		CCNA_03386	0.68	-1.0
3,559,762	-		CCNA_03386	0.71	+0.7
3,559,781	+		CCNA_03386	0.72	+0.3
3,559,784	-		CCNA_03386	0.72	+0.3
3,559,786	+		CCNA_03386	0.73	-0.4
3,559,859	-		CCNA_03386	0.76	-0.7
3,559,902	+		CCNA_03386	0.78	+0.1
3,559,947	+		CCNA_03386	0.80	+1.2
3,559,989	+		CCNA_03386	0.82	+0.7
3,559,997	-		CCNA_03386	0.82	-0.6
3,560,028	+		CCNA_03386	0.84	-0.7
3,560,044	+		CCNA_03386	0.84	-1.1
3,560,080	+		CCNA_03386	0.86	-0.1
3,560,199	+				-1.0
3,560,199	+				+1.3
3,560,207	-				-0.5
3,560,237	+				-0.6
3,560,237	+				+0.7
3,560,260	+				-0.7
3,560,260	+				+1.0
3,560,268	-				+0.8
3,560,268	-				+2.0
3,560,268	-				+1.4
3,560,327	+				-0.1
3,560,367	+				+0.1
3,560,375	-				-0.5
3,560,407	-				-2.1
3,560,409	-				+1.7
3,560,409	-				-0.2
3,560,409	-				+0.8
3,560,409	-				-0.3
3,560,409	-				-0.2
3,560,409	-				+0.0
3,560,422	-				-0.5
3,560,496	+				-0.6
3,560,515	+				-1.9
3,560,566	+				-0.5
3,560,579	-		CCNA_03387	0.11	-1.7
3,560,617	+		CCNA_03387	0.16	-0.7
3,560,617	+		CCNA_03387	0.16	-0.6
3,560,625	-		CCNA_03387	0.18	-1.2
3,560,625	-		CCNA_03387	0.18	-0.3
3,560,669	+		CCNA_03387	0.24	-1.3
3,560,801	+		CCNA_03387	0.42	+1.7
3,560,820	+		CCNA_03387	0.45	-0.2
3,560,857	-		CCNA_03387	0.50	+1.0
3,560,872	-		CCNA_03387	0.52	-0.6
3,560,891	+		CCNA_03387	0.55	+0.5
3,560,914	-		CCNA_03387	0.58	-2.0
3,560,916	-		CCNA_03387	0.58	-0.8
3,560,954	-		CCNA_03387	0.64	+0.5
3,560,964	+		CCNA_03387	0.65	-0.7
3,560,972	-		CCNA_03387	0.66	+3.0
3,561,027	+		CCNA_03387	0.74	+0.7
3,561,027	+		CCNA_03387	0.74	+0.8
3,561,032	+		CCNA_03387	0.75	-2.4
3,561,032	+		CCNA_03387	0.75	+1.7
3,561,035	-		CCNA_03387	0.75	-0.9
3,561,035	-		CCNA_03387	0.75	-2.6
3,561,040	-		CCNA_03387	0.76	+0.1
3,561,040	-		CCNA_03387	0.76	+0.0
3,561,093	-		CCNA_03387	0.83	+0.4
3,561,118	-		CCNA_03387	0.87	-0.7
3,561,144	+				-1.0
3,561,146	+				-0.2
3,561,151	+				-0.4
3,561,151	+				-0.5
3,561,151	+				-0.3
3,561,152	-				+0.0
3,561,194	+				-0.2
3,561,201	-				+0.4
3,561,201	-				-0.7
3,561,202	-				-0.9
3,561,263	+				-0.5
3,561,263	+				-2.2
3,561,263	+				-1.3
3,561,271	-				-1.4
3,561,271	-				+0.3
3,561,271	-				-1.2
3,561,271	-				-1.1
3,561,311	-				+0.4
3,561,316	+				+0.9
3,561,324	+				+0.0
3,561,324	-				-1.0
3,561,324	-				+0.3
3,561,348	-		CCNA_03388	0.12	-0.5
3,561,353	+		CCNA_03388	0.12	-1.0
3,561,370	+		CCNA_03388	0.15	-0.9
3,561,370	+		CCNA_03388	0.15	+0.1
3,561,390	+		CCNA_03388	0.17	-0.8
3,561,391	+		CCNA_03388	0.18	-1.0
3,561,406	+		CCNA_03388	0.20	+0.0
3,561,468	-		CCNA_03388	0.28	-0.8
3,561,488	+		CCNA_03388	0.31	+0.5
3,561,488	+		CCNA_03388	0.31	-1.3
3,561,496	-		CCNA_03388	0.32	+0.4
3,561,496	-		CCNA_03388	0.32	-0.7
3,561,496	-		CCNA_03388	0.32	-0.0
3,561,518	+		CCNA_03388	0.35	-0.6
3,561,548	-		CCNA_03388	0.39	+0.4
3,561,556	+		CCNA_03388	0.40	+0.6
3,561,556	+		CCNA_03388	0.40	-0.4
3,561,563	-		CCNA_03388	0.41	+0.8
3,561,563	-		CCNA_03388	0.41	+0.6
3,561,564	-		CCNA_03388	0.41	+0.3
3,561,564	-		CCNA_03388	0.41	+0.7
3,561,564	-		CCNA_03388	0.41	+0.1
3,561,564	-		CCNA_03388	0.41	-0.3
3,561,564	-		CCNA_03388	0.41	-0.5
3,561,582	+		CCNA_03388	0.44	+0.4
3,561,603	-		CCNA_03388	0.47	-1.2
3,561,662	-		CCNA_03388	0.55	+0.3
3,561,690	+		CCNA_03388	0.59	-1.1
3,561,698	-		CCNA_03388	0.60	-0.0
3,561,729	+		CCNA_03388	0.64	-0.9
3,561,739	+		CCNA_03388	0.66	-1.2
3,561,739	+		CCNA_03388	0.66	+1.0
3,561,739	+		CCNA_03388	0.66	-0.5
3,561,741	+		CCNA_03388	0.66	+0.2
3,561,747	-		CCNA_03388	0.67	-0.9
3,561,747	-		CCNA_03388	0.67	-2.0
3,561,747	-		CCNA_03388	0.67	+0.7
3,561,747	-		CCNA_03388	0.67	+0.2
3,561,767	-		CCNA_03388	0.69	-0.5
3,561,778	+		CCNA_03388	0.71	-1.3
3,561,782	+		CCNA_03388	0.71	-1.0
3,561,782	+		CCNA_03388	0.71	+0.0
3,561,782	+		CCNA_03388	0.71	-1.6
3,561,782	+		CCNA_03388	0.71	-0.5
3,561,790	-		CCNA_03388	0.73	-0.5
3,561,806	-		CCNA_03388	0.75	-1.6
3,561,818	+		CCNA_03388	0.76	+0.5
3,561,826	-		CCNA_03388	0.78	-1.3
3,561,826	-		CCNA_03388	0.78	-0.7
3,561,979	-				-0.9
3,562,098	+		CCNA_03389	0.12	-0.7
3,562,132	+		CCNA_03389	0.15	-1.7
3,562,140	-		CCNA_03389	0.16	-0.6
3,562,155	+		CCNA_03389	0.18	-2.9