Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03355

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,532,133	-				-1.0
3,532,150	-				-1.0
3,532,150	-				-0.8
3,532,150	-				-1.5
3,532,160	+				+1.6
3,532,173	-				-0.5
3,532,217	-				+0.5
3,532,330	+		CCNA_03354	0.27	+0.8
3,532,338	-				+1.8
3,532,338	-		CCNA_03354	0.29	+0.7
3,532,338	-		CCNA_03354	0.29	-0.7
3,532,373	+		CCNA_03354	0.34	+1.2
3,532,405	-		CCNA_03354	0.39	+1.6
3,532,405	-		CCNA_03354	0.39	+0.7
3,532,444	+		CCNA_03354	0.45	+0.0
3,532,452	-		CCNA_03354	0.46	+0.6
3,532,455	+		CCNA_03354	0.47	+0.8
3,532,504	-		CCNA_03354	0.54	+0.7
3,532,505	+		CCNA_03354	0.55	+3.0
3,532,506	+		CCNA_03354	0.55	+3.2
3,532,523	-		CCNA_03354	0.57	+1.2
3,532,523	-		CCNA_03354	0.57	+0.3
3,532,558	-				+2.2
3,532,558	-		CCNA_03354	0.63	-0.1
3,532,783	+				-0.5
3,532,810	-				-0.5
3,532,817	-				+0.7
3,532,855	-				-0.0
3,532,857	+				-0.6
3,532,865	-				+0.8
3,532,909	+				-0.8
3,532,945	-				+0.4
3,532,977	+				-1.4
3,533,000	+				+1.0
3,533,000	+				+0.8
3,533,000	+				-0.0
3,533,071	+				-1.3
3,533,080	-				+1.6
3,533,099	+				+0.7
3,533,113	-				-0.2
3,533,114	+				-0.6
3,533,122	-				-0.3
3,533,124	+				+0.6
3,533,132	-				+1.2
3,533,174	-				+0.9
3,533,174	-				+1.1
3,533,176	+				-0.7
3,533,184	-				+0.5
3,533,184	-				+1.8
3,533,184	-				+1.3
3,533,220	+				+1.8
3,533,242	-				+1.7
3,533,262	+				+0.3
3,533,272	+				+0.6
3,533,272	+				+0.1
3,533,280	-				+1.4
3,533,280	-				+1.2
3,533,285	-				+0.5
3,533,290	-				+0.4
3,533,302	-				+0.8
3,533,311	-				+0.9
3,533,324	-				+0.9
3,533,324	-				+0.2
3,533,324	-				+0.5
3,533,354	+		CCNA_03355	0.11	+1.3
3,533,367	-		CCNA_03355	0.12	+2.0
3,533,377	-		CCNA_03355	0.12	+1.5
3,533,377	-		CCNA_03355	0.12	+1.3
3,533,408	+		CCNA_03355	0.14	-0.4
3,533,437	-		CCNA_03355	0.15	+0.7
3,533,487	+		CCNA_03355	0.18	+0.2
3,533,487	+		CCNA_03355	0.18	+1.1
3,533,487	+		CCNA_03355	0.18	-1.2
3,533,487	+		CCNA_03355	0.18	+0.1
3,533,495	-		CCNA_03355	0.18	+1.3
3,533,495	-		CCNA_03355	0.18	+1.3
3,533,495	-		CCNA_03355	0.18	+1.6
3,533,495	-		CCNA_03355	0.18	+0.7
3,533,495	-		CCNA_03355	0.18	+1.5
3,533,495	-		CCNA_03355	0.18	+1.0
3,533,495	-		CCNA_03355	0.18	+0.7
3,533,495	-		CCNA_03355	0.18	+0.6
3,533,497	+		CCNA_03355	0.18	-2.3
3,533,497	+		CCNA_03355	0.18	+0.6
3,533,546	-		CCNA_03355	0.21	+0.2
3,533,549	+		CCNA_03355	0.21	+3.1
3,533,553	+		CCNA_03355	0.21	-1.2
3,533,556	+		CCNA_03355	0.21	-0.8
3,533,557	-		CCNA_03355	0.21	+0.2
3,533,562	+		CCNA_03355	0.22	+1.3
3,533,570	-		CCNA_03355	0.22	+0.4
3,533,656	+		CCNA_03355	0.26	+1.6
3,533,665	+		CCNA_03355	0.27	-0.6
3,533,702	+		CCNA_03355	0.29	-0.0
3,533,715	-		CCNA_03355	0.29	-0.9
3,533,717	+		CCNA_03355	0.29	-0.7
3,533,717	+		CCNA_03355	0.29	+0.2
3,533,717	+		CCNA_03355	0.29	+0.3
3,533,717	+		CCNA_03355	0.29	-0.3
3,533,725	-		CCNA_03355	0.30	+0.1
3,533,823	-		CCNA_03355	0.35	+0.6
3,533,833	+		CCNA_03355	0.35	+0.4
3,533,841	-		CCNA_03355	0.36	+1.4
3,533,844	+		CCNA_03355	0.36	+1.6
3,533,844	+		CCNA_03355	0.36	-0.4
3,533,845	-		CCNA_03355	0.36	+0.3
3,533,849	+		CCNA_03355	0.36	-0.6
3,533,849	+		CCNA_03355	0.36	-1.7
3,533,849	+		CCNA_03355	0.36	-1.2
3,533,852	-		CCNA_03355	0.36	+0.7
3,533,857	-		CCNA_03355	0.37	-0.1
3,533,857	-		CCNA_03355	0.37	+0.5
3,533,857	-		CCNA_03355	0.37	+1.1
3,533,857	-		CCNA_03355	0.37	-0.4
3,533,883	+		CCNA_03355	0.38	-2.1
3,533,883	+		CCNA_03355	0.38	-2.0
3,533,884	+		CCNA_03355	0.38	-0.9
3,533,891	-		CCNA_03355	0.38	-0.6
3,533,891	-		CCNA_03355	0.38	+1.3
3,533,891	-		CCNA_03355	0.38	-1.1
3,533,891	-		CCNA_03355	0.38	+0.8
3,533,897	-		CCNA_03355	0.39	+1.7
3,533,909	+		CCNA_03355	0.39	+2.1
3,533,917	-		CCNA_03355	0.40	+0.2
3,533,930	+		CCNA_03355	0.40	-0.9
3,533,937	+		CCNA_03355	0.41	+0.6
3,533,976	-		CCNA_03355	0.42	-0.6
3,534,003	+		CCNA_03355	0.44	+3.1
3,534,011	-		CCNA_03355	0.44	-0.3
3,534,013	+		CCNA_03355	0.44	+1.6
3,534,013	+		CCNA_03355	0.44	+0.1
3,534,060	+		CCNA_03355	0.47	+2.6
3,534,060	+		CCNA_03355	0.47	+0.6
3,534,060	+		CCNA_03355	0.47	+0.6
3,534,060	+		CCNA_03355	0.47	+1.8
3,534,068	-		CCNA_03355	0.47	-0.5
3,534,068	-		CCNA_03355	0.47	-0.7
3,534,071	+		CCNA_03355	0.47	-0.7
3,534,071	+		CCNA_03355	0.47	-1.3
3,534,071	+		CCNA_03355	0.47	-0.4
3,534,071	+		CCNA_03355	0.47	-1.0
3,534,071	+		CCNA_03355	0.47	-0.3
3,534,079	-		CCNA_03355	0.48	+1.0
3,534,079	-		CCNA_03355	0.48	+1.1
3,534,079	-		CCNA_03355	0.48	-0.1
3,534,079	-		CCNA_03355	0.48	+0.3
3,534,079	-		CCNA_03355	0.48	-1.4
3,534,079	-		CCNA_03355	0.48	-0.4
3,534,079	-		CCNA_03355	0.48	+2.3
3,534,079	-		CCNA_03355	0.48	-0.4
3,534,079	-		CCNA_03355	0.48	+2.1
3,534,079	-		CCNA_03355	0.48	+0.1
3,534,079	-		CCNA_03355	0.48	-0.3
3,534,079	-		CCNA_03355	0.48	-2.4
3,534,079	-		CCNA_03355	0.48	+1.8
3,534,079	-		CCNA_03355	0.48	+2.0
3,534,079	-		CCNA_03355	0.48	-0.0
3,534,079	-		CCNA_03355	0.48	-0.8
3,534,079	-		CCNA_03355	0.48	-0.2
3,534,079	-		CCNA_03355	0.48	+0.2
3,534,079	-		CCNA_03355	0.48	+1.1
3,534,097	+		CCNA_03355	0.49	+1.8
3,534,179	-		CCNA_03355	0.53	-1.0
3,534,190	+		CCNA_03355	0.53	-0.2
3,534,217	+		CCNA_03355	0.55	+1.3
3,534,246	+		CCNA_03355	0.56	+0.1
3,534,254	-		CCNA_03355	0.56	+0.0
3,534,254	-		CCNA_03355	0.56	+1.1
3,534,254	-		CCNA_03355	0.56	-0.8
3,534,254	-		CCNA_03355	0.56	+0.4
3,534,254	-		CCNA_03355	0.56	-0.9
3,534,254	-		CCNA_03355	0.56	-0.8
3,534,292	-		CCNA_03355	0.58	+1.6
3,534,292	-		CCNA_03355	0.58	+0.8
3,534,301	+		CCNA_03355	0.59	-0.7
3,534,315	-		CCNA_03355	0.60	+0.1
3,534,355	+		CCNA_03355	0.62	+0.3
3,534,355	+		CCNA_03355	0.62	-1.5
3,534,386	+		CCNA_03355	0.63	+0.2
3,534,387	+		CCNA_03355	0.63	+0.4
3,534,401	+		CCNA_03355	0.64	+0.6
3,534,409	-		CCNA_03355	0.64	+0.2
3,534,409	-		CCNA_03355	0.64	+0.8
3,534,409	-		CCNA_03355	0.64	+1.4
3,534,422	+		CCNA_03355	0.65	+1.1
3,534,422	+		CCNA_03355	0.65	+0.5
3,534,426	-		CCNA_03355	0.65	-0.1
3,534,427	+		CCNA_03355	0.65	+0.6
3,534,430	-		CCNA_03355	0.65	-0.2
3,534,430	-		CCNA_03355	0.65	+3.1
3,534,430	-		CCNA_03355	0.65	-1.0
3,534,430	-		CCNA_03355	0.65	-0.3
3,534,430	-		CCNA_03355	0.65	-0.4
3,534,481	-		CCNA_03355	0.68	-0.9
3,534,501	+		CCNA_03355	0.69	+4.1
3,534,507	+		CCNA_03355	0.69	-1.0
3,534,510	-		CCNA_03355	0.69	-1.8
3,534,515	-		CCNA_03355	0.70	-0.4
3,534,515	-		CCNA_03355	0.70	-1.2
3,534,523	-		CCNA_03355	0.70	+0.3
3,534,547	+		CCNA_03355	0.71	+1.8
3,534,547	+		CCNA_03355	0.71	-0.2
3,534,576	-		CCNA_03355	0.73	+2.3
3,534,600	+		CCNA_03355	0.74	+0.8
3,534,623	-		CCNA_03355	0.75	-0.6
3,534,628	-		CCNA_03355	0.75	-1.0
3,534,639	+		CCNA_03355	0.76	-0.6
3,534,639	-		CCNA_03355	0.76	+0.6
3,534,642	-		CCNA_03355	0.76	-0.2
3,534,644	+		CCNA_03355	0.76	+0.7
3,534,652	-		CCNA_03355	0.77	-0.4
3,534,652	-		CCNA_03355	0.77	+0.5
3,534,655	+		CCNA_03355	0.77	-0.5
3,534,658	-		CCNA_03355	0.77	+2.0
3,534,665	+		CCNA_03355	0.77	-0.1
3,534,683	+		CCNA_03355	0.78	-0.9
3,534,683	+		CCNA_03355	0.78	+1.0
3,534,686	-		CCNA_03355	0.78	-1.9
3,534,686	-		CCNA_03355	0.78	-0.1
3,534,686	-		CCNA_03355	0.78	+1.3
3,534,688	+		CCNA_03355	0.78	-0.0
3,534,760	-		CCNA_03355	0.82	+0.5
3,534,805	-		CCNA_03355	0.84	-0.8
3,534,805	-		CCNA_03355	0.84	+0.7
3,534,838	-		CCNA_03355	0.86	+0.9
3,534,843	-		CCNA_03355	0.86	-0.1
3,534,843	-		CCNA_03355	0.86	-0.9
3,534,899	-		CCNA_03355	0.89	-0.4
3,534,900	-		CCNA_03355	0.89	+0.9
3,534,929	-				+0.8
3,534,947	+				+0.3
3,534,965	+				-1.1
3,534,967	+				-1.1
3,534,987	+				-0.9
3,534,990	-				+0.5
3,535,002	+				-0.6
3,535,005	-				-0.5
3,535,005	-				-0.5
3,535,007	+				-2.3
3,535,016	+				-0.4
3,535,024	-				-0.3
3,535,051	+				+2.6
3,535,059	-				-0.6
3,535,059	-				-0.8
3,535,070	-				+0.1
3,535,110	+				+0.1
3,535,120	-				+1.6
3,535,120	-				+1.3
3,535,169	-				+1.4
3,535,239	-		CCNA_03356	0.16	+0.8
3,535,268	-		CCNA_03356	0.25	+1.6
3,535,290	+		CCNA_03356	0.31	-0.4
3,535,290	+		CCNA_03356	0.31	+1.8
3,535,292	-		CCNA_03356	0.32	+0.3
3,535,298	-		CCNA_03356	0.34	+0.2
3,535,308	-		CCNA_03356	0.37	+0.7
3,535,320	+		CCNA_03356	0.41	+1.4
3,535,328	-		CCNA_03356	0.43	+0.6
3,535,342	+		CCNA_03356	0.47	+0.8
3,535,347	-		CCNA_03356	0.49	+1.8
3,535,353	+		CCNA_03356	0.51	+1.9
3,535,371	+		CCNA_03356	0.56	-1.3
3,535,387	+		CCNA_03356	0.61	-1.9
3,535,395	-		CCNA_03356	0.64	+2.0
3,535,436	+		CCNA_03356	0.76	+1.3
3,535,441	+		CCNA_03356	0.78	+0.1
3,535,441	+		CCNA_03356	0.78	-0.3
3,535,444	-		CCNA_03356	0.79	+0.4
3,535,449	-		CCNA_03356	0.80	+2.5
3,535,455	-		CCNA_03356	0.82	+1.4
3,535,481	-				+1.1
3,535,493	-				+1.2
3,535,510	-				+1.0
3,535,510	-				+1.0
3,535,515	+				-0.9
3,535,515	+				-0.0
3,535,523	-				+1.1
3,535,523	-				+2.0
3,535,523	-				+1.4
3,535,533	-				+2.0
3,535,559	-		CCNA_03357	0.11	+2.5
3,535,580	-		CCNA_03357	0.16	+1.7
3,535,600	-		CCNA_03357	0.22	+2.8
3,535,600	-		CCNA_03357	0.22	+1.7
3,535,600	-		CCNA_03357	0.22	+1.8
3,535,600	-		CCNA_03357	0.22	+1.4
3,535,628	-		CCNA_03357	0.29	+1.0
3,535,642	-		CCNA_03357	0.33	+1.0
3,535,658	+		CCNA_03357	0.37	-0.5
3,535,686	+		CCNA_03357	0.44	-0.5
3,535,694	-		CCNA_03357	0.46	+0.3
3,535,700	+		CCNA_03357	0.48	+0.1
3,535,708	-		CCNA_03357	0.50	+3.0
3,535,727	-		CCNA_03357	0.55	+1.8
3,535,740	-		CCNA_03357	0.58	+0.6
3,535,740	-		CCNA_03357	0.58	+2.9
3,535,754	+		CCNA_03357	0.62	-0.8
3,535,754	+		CCNA_03357	0.62	+0.2
3,535,826	-		CCNA_03357	0.80	+2.3
3,535,828	+		CCNA_03357	0.81	-2.3
3,535,834	-		CCNA_03357	0.83	+1.5
3,535,836	-		CCNA_03357	0.83	-0.6
3,535,836	-		CCNA_03357	0.83	+1.2
3,535,857	-		CCNA_03357	0.89	-0.6
3,535,870	+				-0.2
3,535,871	+				-1.1
3,535,872	-				+1.9
3,535,872	-				+0.1
3,535,872	-				+1.4
3,535,879	-				+2.3
3,535,879	-				+1.4
3,535,879	-				+0.1
3,535,879	-				+0.1
3,535,879	-				-0.5
3,535,884	-				+0.2
3,535,942	+				-0.4
3,535,942	+				-1.6
3,535,942	+				-0.9
3,535,942	+				+0.6
3,535,942	+				-0.7
3,535,942	+				+0.6
3,535,943	+				-0.5
3,535,943	+				-0.1
3,535,950	-				-0.6
3,535,950	-				-0.1
3,535,950	-				-0.1
3,535,950	-				+1.1
3,535,950	-				-0.8
3,535,950	-				+0.3
3,535,950	-				+1.1
3,535,950	-				-0.6
3,535,950	-				+0.2
3,535,950	-				+0.7
3,535,951	-				+0.5
3,535,951	-				+0.1
3,535,951	-				+2.1
3,535,978	+				-0.3
3,535,983	+				+0.7
3,535,983	+				-0.9
3,535,983	+				+1.8
3,535,991	-				-0.9
3,535,991	-				+1.6
3,536,001	-				+1.0
3,536,030	-				+2.3
3,536,058	+				-0.1
3,536,066	-				+0.6
3,536,099	+				+0.5