Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03352

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,529,448	-				+0.1
3,529,457	+				+0.1
3,529,465	-				-0.7
3,529,476	-				-0.6
3,529,488	+				+0.4
3,529,494	-				+2.3
3,529,501	-				+0.1
3,529,519	+		CCNA_03351	0.10	-0.3
3,529,523	+		CCNA_03351	0.11	-1.2
3,529,532	-		CCNA_03351	0.12	-0.1
3,529,533	+		CCNA_03351	0.12	+3.2
3,529,533	+		CCNA_03351	0.12	+1.0
3,529,533	+		CCNA_03351	0.12	+0.4
3,529,541	-		CCNA_03351	0.13	+1.9
3,529,587	+		CCNA_03351	0.18	-1.0
3,529,587	+		CCNA_03351	0.18	-0.4
3,529,605	+		CCNA_03351	0.19	+0.7
3,529,613	-		CCNA_03351	0.20	+1.0
3,529,642	-		CCNA_03351	0.23	-0.2
3,529,654	-		CCNA_03351	0.25	+1.3
3,529,667	-		CCNA_03351	0.26	+1.0
3,529,673	+		CCNA_03351	0.26	-3.6
3,529,681	-		CCNA_03351	0.27	+1.4
3,529,697	+		CCNA_03351	0.29	-1.1
3,529,705	-		CCNA_03351	0.30	-0.3
3,529,739	+		CCNA_03351	0.33	+0.5
3,529,740	+		CCNA_03351	0.33	-0.3
3,529,747	-		CCNA_03351	0.34	+1.1
3,529,748	-		CCNA_03351	0.34	-0.1
3,529,750	+		CCNA_03351	0.34	+1.0
3,529,777	+		CCNA_03351	0.37	+0.2
3,529,781	-		CCNA_03351	0.38	+1.6
3,529,792	+		CCNA_03351	0.39	-0.3
3,529,797	+		CCNA_03351	0.39	-0.5
3,529,805	-		CCNA_03351	0.40	+0.4
3,529,805	-		CCNA_03351	0.40	+0.3
3,529,805	-		CCNA_03351	0.40	+0.5
3,529,822	+		CCNA_03351	0.42	-0.7
3,529,830	-		CCNA_03351	0.43	+1.0
3,529,830	-		CCNA_03351	0.43	-0.7
3,529,831	-		CCNA_03351	0.43	+0.6
3,529,836	+		CCNA_03351	0.43	-2.5
3,529,836	+		CCNA_03351	0.43	+1.2
3,529,841	+		CCNA_03351	0.44	-1.3
3,529,844	-		CCNA_03351	0.44	-0.2
3,529,844	-		CCNA_03351	0.44	+0.6
3,529,844	-		CCNA_03351	0.44	+0.9
3,529,844	-		CCNA_03351	0.44	+0.4
3,529,844	-		CCNA_03351	0.44	-0.2
3,529,844	-		CCNA_03351	0.44	+0.4
3,529,846	+		CCNA_03351	0.44	-2.5
3,529,863	-		CCNA_03351	0.46	+1.2
3,529,868	-		CCNA_03351	0.47	-0.1
3,529,871	+		CCNA_03351	0.47	-0.3
3,529,883	+		CCNA_03351	0.48	+0.6
3,529,885	-		CCNA_03351	0.48	+0.5
3,529,896	-		CCNA_03351	0.50	+0.6
3,529,942	-		CCNA_03351	0.54	+1.9
3,529,950	+		CCNA_03351	0.55	+0.1
3,529,958	-		CCNA_03351	0.56	+0.6
3,530,019	+		CCNA_03351	0.62	-1.1
3,530,021	+		CCNA_03351	0.63	-1.0
3,530,027	-		CCNA_03351	0.63	+1.0
3,530,027	-		CCNA_03351	0.63	+0.8
3,530,037	-		CCNA_03351	0.64	+0.2
3,530,074	+		CCNA_03351	0.68	+0.3
3,530,074	+		CCNA_03351	0.68	+1.2
3,530,082	-		CCNA_03351	0.69	+1.3
3,530,082	-		CCNA_03351	0.69	-0.8
3,530,096	+		CCNA_03351	0.70	-0.8
3,530,125	+		CCNA_03351	0.73	-0.3
3,530,133	-		CCNA_03351	0.74	+0.9
3,530,133	-		CCNA_03351	0.74	+2.2
3,530,151	+		CCNA_03351	0.76	-0.8
3,530,151	+		CCNA_03351	0.76	+0.3
3,530,154	-		CCNA_03351	0.76	+0.7
3,530,156	+		CCNA_03351	0.77	+0.6
3,530,156	+		CCNA_03351	0.77	+0.8
3,530,156	+		CCNA_03351	0.77	-0.9
3,530,164	-		CCNA_03351	0.77	+0.2
3,530,164	-		CCNA_03351	0.77	+2.0
3,530,175	+		CCNA_03351	0.79	-0.9
3,530,175	+		CCNA_03351	0.79	+1.6
3,530,175	+		CCNA_03351	0.79	-1.1
3,530,175	+		CCNA_03351	0.79	-0.7
3,530,175	+		CCNA_03351	0.79	-0.2
3,530,183	-		CCNA_03351	0.79	+0.4
3,530,183	-		CCNA_03351	0.79	+0.7
3,530,183	-		CCNA_03351	0.79	+1.2
3,530,183	-		CCNA_03351	0.79	+0.8
3,530,183	-		CCNA_03351	0.79	-0.4
3,530,183	-		CCNA_03351	0.79	+0.7
3,530,198	-		CCNA_03351	0.81	+0.8
3,530,198	-		CCNA_03351	0.81	+2.1
3,530,201	+		CCNA_03351	0.81	-0.1
3,530,213	+		CCNA_03351	0.83	-0.6
3,530,213	+		CCNA_03351	0.83	-1.5
3,530,221	-		CCNA_03351	0.83	+0.1
3,530,223	+		CCNA_03351	0.84	+0.4
3,530,231	-		CCNA_03351	0.84	+2.0
3,530,244	+		CCNA_03351	0.86	-1.1
3,530,252	-		CCNA_03351	0.87	+1.9
3,530,252	-		CCNA_03351	0.87	+1.7
3,530,252	-		CCNA_03351	0.87	+1.3
3,530,252	-		CCNA_03351	0.87	+1.7
3,530,280	+		CCNA_03351	0.90	-1.0
3,530,288	-				+0.9
3,530,300	+				+2.1
3,530,308	-				+1.9
3,530,308	-				+1.3
3,530,321	-				+0.6
3,530,323	+				+0.8
3,530,346	+				+2.1
3,530,352	+				-0.9
3,530,378	-				-0.2
3,530,385	+				-1.1
3,530,425	-				+2.9
3,530,427	+				+0.7
3,530,435	-				+0.9
3,530,454	-				+2.9
3,530,463	-				+2.2
3,530,481	+				-1.4
3,530,481	+				+1.3
3,530,489	-				+3.2
3,530,508	-				+3.1
3,530,536	+		CCNA_03352	0.12	-0.4
3,530,544	-		CCNA_03352	0.13	+3.0
3,530,615	-		CCNA_03352	0.22	+1.8
3,530,636	-		CCNA_03352	0.25	+0.9
3,530,671	+		CCNA_03352	0.29	-1.2
3,530,678	-		CCNA_03352	0.30	+2.8
3,530,678	-		CCNA_03352	0.30	+2.5
3,530,678	-		CCNA_03352	0.30	+2.8
3,530,678	-		CCNA_03352	0.30	+2.5
3,530,685	+		CCNA_03352	0.31	-0.4
3,530,770	+		CCNA_03352	0.43	-0.8
3,530,790	-		CCNA_03352	0.45	+2.0
3,530,816	-		CCNA_03352	0.49	+1.6
3,530,857	-		CCNA_03352	0.54	+1.9
3,530,886	+		CCNA_03352	0.58	+0.8
3,530,934	+		CCNA_03352	0.64	-1.6
3,530,942	-		CCNA_03352	0.65	+1.9
3,531,031	+		CCNA_03352	0.77	+1.2
3,531,033	-		CCNA_03352	0.77	+1.5
3,531,039	-		CCNA_03352	0.78	+1.6
3,531,086	+		CCNA_03352	0.84	+1.0
3,531,091	+		CCNA_03352	0.85	+1.8
3,531,094	-		CCNA_03352	0.85	+1.4
3,531,098	-		CCNA_03352	0.86	+1.8
3,531,132	-				+1.6
3,531,133	+				-0.2
3,531,160	+				+0.6
3,531,170	+				+0.4
3,531,213	+				-0.1
3,531,215	-				+2.1
3,531,239	-				+1.2
3,531,248	+				+0.3
3,531,264	-				-0.4
3,531,295	+				+1.8
3,531,295	+				-0.3
3,531,303	-				+1.4
3,531,303	-				+0.2
3,531,303	-				-0.2
3,531,344	+				-0.3
3,531,352	-				+0.7
3,531,352	-				-0.0
3,531,496	+		CCNA_03353	0.24	-1.7
3,531,500	-		CCNA_03353	0.24	+0.7
3,531,504	-		CCNA_03353	0.25	+0.8
3,531,504	-		CCNA_03353	0.25	+1.6
3,531,504	-		CCNA_03353	0.25	+1.1
3,531,504	-		CCNA_03353	0.25	+0.3
3,531,504	-		CCNA_03353	0.25	+0.3
3,531,506	+		CCNA_03353	0.25	+0.1
3,531,544	+		CCNA_03353	0.29	-0.0
3,531,547	-		CCNA_03353	0.30	-0.7
3,531,578	-		CCNA_03353	0.34	-1.2
3,531,580	+		CCNA_03353	0.34	+0.7
3,531,584	-		CCNA_03353	0.34	+1.1
3,531,624	-		CCNA_03353	0.39	-0.0
3,531,698	+		CCNA_03353	0.48	-0.1
3,531,698	+		CCNA_03353	0.48	+0.4
3,531,706	-		CCNA_03353	0.49	+0.6
3,531,706	-		CCNA_03353	0.49	-0.6
3,531,768	-		CCNA_03353	0.56	-0.1
3,531,808	-		CCNA_03353	0.61	-0.1
3,531,808	-		CCNA_03353	0.61	+1.6
3,531,840	+		CCNA_03353	0.65	+0.1
3,531,848	-		CCNA_03353	0.66	-0.2
3,531,848	-		CCNA_03353	0.66	+0.1
3,531,848	-		CCNA_03353	0.66	-0.3
3,531,848	-		CCNA_03353	0.66	+0.4
3,531,870	-		CCNA_03353	0.69	+0.7
3,531,875	-		CCNA_03353	0.69	+1.3
3,531,882	+		CCNA_03353	0.70	+2.6
3,531,884	+		CCNA_03353	0.70	+0.6
3,531,884	+		CCNA_03353	0.70	+1.8
3,531,890	-		CCNA_03353	0.71	+1.4
3,531,892	-		CCNA_03353	0.71	-0.2
3,531,892	-		CCNA_03353	0.71	+0.6
3,531,892	-		CCNA_03353	0.71	+0.8
3,531,897	-		CCNA_03353	0.72	+0.8
3,531,897	-		CCNA_03353	0.72	+1.0
3,531,914	-		CCNA_03353	0.74	+0.7
3,531,914	-		CCNA_03353	0.74	-0.0
3,531,935	-		CCNA_03353	0.76	+0.6
3,531,935	-		CCNA_03353	0.76	+1.0
3,531,947	+		CCNA_03353	0.78	-0.4
3,531,947	+		CCNA_03353	0.78	-0.0
3,531,955	+		CCNA_03353	0.79	+0.8
3,531,955	-		CCNA_03353	0.79	+0.2
3,531,955	-		CCNA_03353	0.79	+1.2
3,531,955	-		CCNA_03353	0.79	+0.3
3,531,955	-		CCNA_03353	0.79	-0.0
3,531,970	+		CCNA_03353	0.81	+0.2
3,531,978	-		CCNA_03353	0.82	+0.6
3,531,978	-		CCNA_03353	0.82	+0.5
3,531,978	-		CCNA_03353	0.82	+1.8
3,531,978	-		CCNA_03353	0.82	-0.6
3,532,017	-		CCNA_03353	0.86	+0.1
3,532,066	-				+1.1
3,532,125	+				-0.2
3,532,133	-				-1.0
3,532,150	-				-1.0
3,532,150	-				-0.8
3,532,150	-				-1.5
3,532,160	+				+1.6
3,532,173	-				-0.5