Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03253

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,422,714	-		CCNA_03989	0.53	+3.6
3,422,718	-		CCNA_03989	0.53	+4.0
3,422,718	-		CCNA_03989	0.53	+3.5
3,422,722	-		CCNA_03989	0.54	+4.4
3,422,779	+		CCNA_03989	0.59	+1.5
3,422,824	+		CCNA_03989	0.64	+0.7
3,422,836	-		CCNA_03989	0.65	+3.3
3,422,853	-		CCNA_03989	0.67	+4.6
3,422,858	-		CCNA_03989	0.68	+4.4
3,422,860	+		CCNA_03989	0.68	+0.2
3,422,927	+		CCNA_03989	0.75	+0.6
3,422,927	+		CCNA_03989	0.75	-1.2
3,422,954	-		CCNA_03989	0.78	+4.1
3,422,955	+		CCNA_03989	0.78	+0.5
3,423,019	+		CCNA_03989	0.84	+1.5
3,423,027	-		CCNA_03989	0.85	+4.3
3,423,055	-		CCNA_03989	0.88	+4.3
3,423,064	-		CCNA_03989	0.89	+3.8
3,423,064	-		CCNA_03989	0.89	+3.6
3,423,109	-				+3.7
3,423,133	+				+0.3
3,423,138	+				-0.2
3,423,234	-				+0.1
3,423,299	+				-1.6
3,423,307	+				+1.4
3,423,307	-				-2.1
3,423,314	+				+4.8
3,423,343	+				+4.2
3,423,343	+				+5.1
3,423,392	+				+5.0
3,423,397	+		CCNA_03252	0.23	+4.7
3,423,402	+		CCNA_03252	0.24	+4.8
3,423,492	+		CCNA_03252	0.48	+4.9
3,423,492	+		CCNA_03252	0.48	+5.0
3,423,517	+		CCNA_03252	0.54	+4.5
3,423,517	+		CCNA_03252	0.54	+5.1
3,423,517	+		CCNA_03252	0.54	+4.8
3,423,517	+		CCNA_03252	0.54	+4.9
3,423,522	+		CCNA_03252	0.55	+4.8
3,423,523	+		CCNA_03252	0.56	+5.0
3,423,524	+		CCNA_03252	0.56	+4.5
3,423,532	+		CCNA_03252	0.58	+4.6
3,423,532	+		CCNA_03252	0.58	+4.9
3,423,542	+		CCNA_03252	0.61	+5.0
3,423,590	+		CCNA_03252	0.73	+4.7
3,423,609	+		CCNA_03252	0.78	+5.1
3,423,652	+		CCNA_03252	0.90	+2.3
3,423,691	-				-2.1
3,423,756	-				-0.8
3,423,756	-				-0.5
3,423,765	+				-0.0
3,423,799	+				+0.1
3,423,799	+				+0.6
3,423,799	+				+1.4
3,423,802	-				-0.9
3,423,807	-				-0.7
3,423,814	+				-0.2
3,423,814	+				-1.0
3,423,814	+				-0.4
3,423,822	-				-0.2
3,423,822	-				+0.3
3,423,827	-		CCNA_03253	0.10	+2.0
3,423,837	+		CCNA_03253	0.11	-0.5
3,423,842	-		CCNA_03253	0.11	-0.0
3,423,884	-		CCNA_03253	0.15	+0.4
3,423,895	-		CCNA_03253	0.15	+0.6
3,423,900	+		CCNA_03253	0.16	+0.0
3,423,900	+		CCNA_03253	0.16	-0.5
3,423,900	+		CCNA_03253	0.16	-0.8
3,423,900	+		CCNA_03253	0.16	+2.2
3,423,908	-		CCNA_03253	0.16	-1.4
3,423,908	-		CCNA_03253	0.16	-0.4
3,423,908	-		CCNA_03253	0.16	+0.0
3,423,908	-		CCNA_03253	0.16	+1.1
3,423,921	-		CCNA_03253	0.17	-1.2
3,423,923	-		CCNA_03253	0.17	+2.0
3,423,949	+		CCNA_03253	0.19	+0.8
3,423,949	+		CCNA_03253	0.19	-0.0
3,423,957	-		CCNA_03253	0.20	-0.5
3,423,957	-		CCNA_03253	0.20	+1.5
3,423,982	+		CCNA_03253	0.22	-0.4
3,423,983	+		CCNA_03253	0.22	+3.3
3,423,983	+		CCNA_03253	0.22	+3.1
3,423,987	+		CCNA_03253	0.22	-0.2
3,423,987	+		CCNA_03253	0.22	+0.4
3,423,991	-		CCNA_03253	0.22	-0.5
3,424,002	-		CCNA_03253	0.23	-0.3
3,424,007	+		CCNA_03253	0.24	+0.8
3,424,026	-		CCNA_03253	0.25	-0.7
3,424,082	-		CCNA_03253	0.29	+0.5
3,424,082	-		CCNA_03253	0.29	+0.8
3,424,125	+		CCNA_03253	0.32	-0.1
3,424,125	+		CCNA_03253	0.32	-1.0
3,424,128	-		CCNA_03253	0.33	-0.0
3,424,128	-		CCNA_03253	0.33	+3.0
3,424,133	-		CCNA_03253	0.33	+0.0
3,424,133	-		CCNA_03253	0.33	-0.7
3,424,133	-		CCNA_03253	0.33	+0.2
3,424,169	+		CCNA_03253	0.36	-0.5
3,424,177	+		CCNA_03253	0.36	-1.9
3,424,229	+		CCNA_03253	0.40	-2.7
3,424,239	+		CCNA_03253	0.41	+0.8
3,424,244	+		CCNA_03253	0.41	+2.9
3,424,244	+		CCNA_03253	0.41	+3.5
3,424,252	-		CCNA_03253	0.42	+0.2
3,424,252	-		CCNA_03253	0.42	-1.6
3,424,254	+		CCNA_03253	0.42	+0.6
3,424,254	+				+2.0
3,424,290	-		CCNA_03253	0.45	-0.2
3,424,290	-		CCNA_03253	0.45	+0.1
3,424,290	-		CCNA_03253	0.45	+0.3
3,424,292	+		CCNA_03253	0.45	+1.1
3,424,310	+		CCNA_03253	0.46	+1.2
3,424,311	+		CCNA_03253	0.46	+1.7
3,424,360	+		CCNA_03253	0.50	-0.8
3,424,365	+		CCNA_03253	0.50	+1.7
3,424,373	-		CCNA_03253	0.51	+1.1
3,424,373	-		CCNA_03253	0.51	-2.1
3,424,373	-		CCNA_03253	0.51	-1.3
3,424,373	-		CCNA_03253	0.51	-1.3
3,424,373	-		CCNA_03253	0.51	-0.4
3,424,373	-		CCNA_03253	0.51	-0.7
3,424,420	+		CCNA_03253	0.54	-1.9
3,424,435	+		CCNA_03253	0.55	+0.6
3,424,436	+		CCNA_03253	0.55	+0.9
3,424,436	+		CCNA_03253	0.55	+0.8
3,424,436	+		CCNA_03253	0.55	+0.3
3,424,441	+		CCNA_03253	0.56	-0.5
3,424,441	+		CCNA_03253	0.56	-1.7
3,424,444	-		CCNA_03253	0.56	-0.1
3,424,444	-		CCNA_03253	0.56	-1.0
3,424,444	-		CCNA_03253	0.56	-1.9
3,424,449	-		CCNA_03253	0.56	+0.8
3,424,449	-		CCNA_03253	0.56	+0.9
3,424,449	-		CCNA_03253	0.56	+0.4
3,424,449	-		CCNA_03253	0.56	+0.8
3,424,449	-		CCNA_03253	0.56	-2.4
3,424,473	+		CCNA_03253	0.58	-0.9
3,424,481	-		CCNA_03253	0.59	-0.8
3,424,485	+		CCNA_03253	0.59	-0.5
3,424,516	+		CCNA_03253	0.61	+2.1
3,424,516	+		CCNA_03253	0.61	+0.9
3,424,524	+		CCNA_03253	0.62	-1.8
3,424,632	-		CCNA_03253	0.70	+1.5
3,424,687	-		CCNA_03253	0.74	-0.9
3,424,728	-		CCNA_03253	0.77	-1.6
3,424,752	-		CCNA_03253	0.79	+1.1
3,424,787	-		CCNA_03253	0.81	-1.6
3,424,858	+		CCNA_03253	0.87	-1.2
3,424,881	+		CCNA_03253	0.88	+2.9
3,424,881	-		CCNA_03253	0.88	+0.3
3,424,889	-		CCNA_03253	0.89	-1.8
3,424,905	+				+1.4
3,424,913	-				-0.3
3,424,918	+				-0.5
3,424,929	+				+0.7
3,424,984	-				-0.0
3,424,984	-				+0.3
3,424,992	+				+1.3
3,424,996	-				+0.0
3,425,057	+				+1.5
3,425,080	+				-0.5
3,425,082	+				+1.0
3,425,096	-				+0.5
3,425,096	-				+0.2
3,425,171	+				+2.0
3,425,228	-				+2.5
3,425,244	+				-0.6
3,425,249	+				+3.5
3,425,249	+				+0.1
3,425,251	-				-0.6
3,425,252	-				+1.0
3,425,257	-				+0.7
3,425,272	+		CCNA_03254	0.10	+1.8
3,425,272	+		CCNA_03254	0.10	-0.4
3,425,272	+		CCNA_03254	0.10	-0.1
3,425,282	+		CCNA_03254	0.11	-0.5
3,425,287	+		CCNA_03254	0.12	-1.0
3,425,297	+		CCNA_03254	0.12	-0.4
3,425,331	+		CCNA_03254	0.15	-0.2
3,425,331	+		CCNA_03254	0.15	+0.3
3,425,331	+		CCNA_03254	0.15	-1.5
3,425,339	-		CCNA_03254	0.15	-0.2
3,425,354	+		CCNA_03254	0.16	+1.5
3,425,354	+		CCNA_03254	0.16	+0.4
3,425,361	-		CCNA_03254	0.17	+0.6
3,425,362	-		CCNA_03254	0.17	+1.4
3,425,378	+		CCNA_03254	0.18	+0.1
3,425,447	+		CCNA_03254	0.23	-1.3
3,425,455	-		CCNA_03254	0.24	+0.9
3,425,462	+		CCNA_03254	0.24	+0.6
3,425,529	+		CCNA_03254	0.29	-0.6
3,425,537	-		CCNA_03254	0.30	+0.7
3,425,544	-		CCNA_03254	0.30	-1.1
3,425,559	-				+2.0
3,425,587	-		CCNA_03254	0.34	-0.8
3,425,597	-		CCNA_03254	0.34	-1.1
3,425,650	+		CCNA_03254	0.38	-1.0
3,425,658	-		CCNA_03254	0.39	+0.4
3,425,718	+		CCNA_03254	0.43	-0.8
3,425,726	-		CCNA_03254	0.44	+0.0
3,425,726	-		CCNA_03254	0.44	+0.2
3,425,742	-		CCNA_03254	0.45	+2.0
3,425,758	+		CCNA_03254	0.46	-0.2
3,425,763	+		CCNA_03254	0.47	-1.8
3,425,763	+		CCNA_03254	0.47	+0.5
3,425,831	+		CCNA_03254	0.52	-0.5
3,425,831	+		CCNA_03254	0.52	+0.6
3,425,839	-		CCNA_03254	0.52	+0.1
3,425,839	-		CCNA_03254	0.52	-0.6
3,425,850	+		CCNA_03254	0.53	-0.7
3,425,901	+		CCNA_03254	0.57	+0.8
3,425,915	-		CCNA_03254	0.58	+0.5
3,425,936	-		CCNA_03254	0.59	+0.5
3,425,941	-		CCNA_03254	0.60	-0.5
3,425,947	+		CCNA_03254	0.60	+0.3
3,425,947	+		CCNA_03254	0.60	+0.6
3,425,947	+		CCNA_03254	0.60	+0.0
3,425,947	+		CCNA_03254	0.60	-1.4
3,425,947	+		CCNA_03254	0.60	+0.6
3,425,949	+		CCNA_03254	0.60	-0.5
3,425,955	-		CCNA_03254	0.61	-0.2
3,425,955	-		CCNA_03254	0.61	+1.1
3,425,955	-		CCNA_03254	0.61	+0.2
3,425,955	-		CCNA_03254	0.61	-1.0
3,425,955	-		CCNA_03254	0.61	+0.5
3,425,955	-		CCNA_03254	0.61	+1.1
3,425,955	-		CCNA_03254	0.61	-0.8
3,425,977	-		CCNA_03254	0.62	+0.3
3,426,013	-		CCNA_03254	0.65	-1.0
3,426,013	-		CCNA_03254	0.65	+1.3
3,426,013	-		CCNA_03254	0.65	-1.1
3,426,027	+		CCNA_03254	0.66	+0.1
3,426,027	+		CCNA_03254	0.66	-1.5
3,426,033	+		CCNA_03254	0.67	-0.0
3,426,035	-		CCNA_03254	0.67	+0.3