Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03221

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,382,024	+		CCNA_03219	0.74	-0.8
3,382,024	+		CCNA_03219	0.74	-1.6
3,382,055	+		CCNA_03219	0.75	-0.8
3,382,055	+		CCNA_03219	0.75	+1.1
3,382,063	-		CCNA_03219	0.76	-0.4
3,382,065	+		CCNA_03219	0.76	-0.1
3,382,065	+		CCNA_03219	0.76	-0.1
3,382,095	-		CCNA_03219	0.77	-0.9
3,382,119	+		CCNA_03219	0.77	-0.8
3,382,119	+		CCNA_03219	0.77	-0.1
3,382,119	+		CCNA_03219	0.77	+1.0
3,382,119	+		CCNA_03219	0.77	-0.9
3,382,127	-		CCNA_03219	0.78	+0.1
3,382,127	-		CCNA_03219	0.78	+0.3
3,382,140	-		CCNA_03219	0.78	+2.0
3,382,140	-		CCNA_03219	0.78	+1.1
3,382,238	-		CCNA_03219	0.81	-1.0
3,382,280	-		CCNA_03219	0.83	-1.8
3,382,297	+		CCNA_03219	0.83	+2.0
3,382,305	-		CCNA_03219	0.83	-1.5
3,382,317	+		CCNA_03219	0.84	-1.0
3,382,325	+		CCNA_03219	0.84	-0.5
3,382,328	-		CCNA_03219	0.84	-1.6
3,382,378	-		CCNA_03219	0.86	-1.4
3,382,384	-		CCNA_03219	0.86	-1.9
3,382,401	-		CCNA_03219	0.87	+0.9
3,382,414	+		CCNA_03219	0.87	+2.3
3,382,419	+		CCNA_03219	0.87	-0.6
3,382,448	+		CCNA_03219	0.88	+1.0
3,382,463	-		CCNA_03219	0.89	-0.6
3,382,513	+				-0.4
3,382,577	+				-0.8
3,382,578	+				-1.6
3,382,586	-				-1.0
3,382,642	-				+0.3
3,382,676	+				-0.0
3,382,684	-				-0.1
3,382,684	-				-1.5
3,382,691	+				-0.1
3,382,699	-				+0.6
3,382,704	-				-0.8
3,382,711	-				+2.3
3,382,737	+				-0.3
3,382,747	+				+0.5
3,382,753	-				+0.1
3,382,787	-				+0.3
3,382,798	+				+1.4
3,382,837	-				-0.3
3,382,862	+				-0.9
3,382,889	-				-1.4
3,382,889	-				+0.7
3,382,919	-				-0.4
3,382,933	+				-0.9
3,382,933	+				+0.4
3,382,941	-				+0.6
3,382,941	-				+1.7
3,382,987	-				-1.1
3,382,994	-				+0.1
3,383,001	+				+0.2
3,383,001	+				+0.1
3,383,004	-				-0.5
3,383,009	-				-0.3
3,383,011	-				+0.1
3,383,014	+				+4.0
3,383,014	+				+0.9
3,383,022	-				-0.7
3,383,034	+				-1.0
3,383,040	-				+0.7
3,383,047	+				+1.3
3,383,061	+				-0.8
3,383,064	-				-0.5
3,383,079	+				+0.1
3,383,079	+				+0.1
3,383,079	+				-0.2
3,383,079	+				+0.3
3,383,079	+				-0.0
3,383,079	+				+0.5
3,383,087	-				+0.1
3,383,089	+				+0.6
3,383,090	+				+2.1
3,383,098	-				+0.7
3,383,113	+				-0.8
3,383,151	+				+0.4
3,383,151	+				-1.4
3,383,245	-		CCNA_03221	0.15	+0.9
3,383,245	-		CCNA_03221	0.15	-0.6
3,383,245	-		CCNA_03221	0.15	-2.1
3,383,245	-		CCNA_03221	0.15	+0.4
3,383,266	+		CCNA_03221	0.16	+0.3
3,383,317	+		CCNA_03221	0.19	+0.7
3,383,317	+		CCNA_03221	0.19	+2.2
3,383,318	-		CCNA_03221	0.19	+0.1
3,383,325	-		CCNA_03221	0.20	+0.1
3,383,330	+		CCNA_03221	0.20	+1.4
3,383,330	+		CCNA_03221	0.20	+0.1
3,383,356	-		CCNA_03221	0.22	+1.1
3,383,374	-		CCNA_03221	0.23	+0.6
3,383,408	+		CCNA_03221	0.25	+1.2
3,383,463	+		CCNA_03221	0.28	+1.4
3,383,463	+		CCNA_03221	0.28	+1.8
3,383,463	+		CCNA_03221	0.28	+2.0
3,383,480	+		CCNA_03221	0.29	+3.6
3,383,480	-		CCNA_03221	0.29	-0.6
3,383,484	+		CCNA_03221	0.29	+1.3
3,383,492	-		CCNA_03221	0.30	+0.1
3,383,520	+		CCNA_03221	0.32	+0.1
3,383,541	-		CCNA_03221	0.33	-0.4
3,383,595	+		CCNA_03221	0.36	+2.0
3,383,595	+		CCNA_03221	0.36	+0.5
3,383,679	-		CCNA_03221	0.41	+0.3
3,383,721	-		CCNA_03221	0.44	-0.0
3,383,728	+		CCNA_03221	0.44	+1.9
3,383,757	-		CCNA_03221	0.46	-0.6
3,383,808	+		CCNA_03221	0.49	+2.4
3,383,808	+		CCNA_03221	0.49	+0.9
3,383,816	-		CCNA_03221	0.50	-0.3
3,383,816	-		CCNA_03221	0.50	-0.4
3,383,846	+		CCNA_03221	0.52	-0.5
3,383,936	+		CCNA_03221	0.57	+0.6
3,383,987	+		CCNA_03221	0.60	+1.4
3,384,017	+		CCNA_03221	0.62	+2.3
3,384,017	+		CCNA_03221	0.62	+0.6
3,384,027	+		CCNA_03221	0.63	-1.2
3,384,035	-		CCNA_03221	0.63	-0.6
3,384,092	+		CCNA_03221	0.67	+0.8
3,384,097	+		CCNA_03221	0.67	+1.0
3,384,105	-		CCNA_03221	0.67	+0.1
3,384,118	+		CCNA_03221	0.68	+0.4
3,384,129	+		CCNA_03221	0.69	-0.0
3,384,129	+		CCNA_03221	0.69	-1.0
3,384,131	+		CCNA_03221	0.69	+0.3
3,384,144	-		CCNA_03221	0.70	+0.9
3,384,144	-		CCNA_03221	0.70	-1.8
3,384,144	-		CCNA_03221	0.70	-1.7
3,384,162	-		CCNA_03221	0.71	-2.1
3,384,192	-		CCNA_03221	0.73	+0.3
3,384,192	-		CCNA_03221	0.73	+3.3
3,384,193	-		CCNA_03221	0.73	+0.6
3,384,199	-		CCNA_03221	0.73	-0.9
3,384,214	-		CCNA_03221	0.74	-1.7
3,384,220	-		CCNA_03221	0.74	-1.0
3,384,296	+		CCNA_03221	0.79	-2.3
3,384,304	-		CCNA_03221	0.80	+2.1
3,384,319	+		CCNA_03221	0.81	+1.7
3,384,327	-		CCNA_03221	0.81	+1.1
3,384,331	+		CCNA_03221	0.81	+1.4
3,384,337	+		CCNA_03221	0.82	+0.1
3,384,347	+		CCNA_03221	0.82	+0.9
3,384,352	+		CCNA_03221	0.83	+0.5
3,384,352	+		CCNA_03221	0.83	-1.2
3,384,388	+		CCNA_03221	0.85	+0.4
3,384,391	-		CCNA_03221	0.85	-0.7
3,384,403	-		CCNA_03221	0.86	-0.6
3,384,417	+		CCNA_03221	0.87	+0.3
3,384,436	-		CCNA_03221	0.88	+1.4
3,384,436	-		CCNA_03221	0.88	+0.1
3,384,445	-		CCNA_03221	0.88	-1.2
3,384,447	+		CCNA_03221	0.88	-1.8
3,384,447	+		CCNA_03221	0.88	+2.3
3,384,447	+		CCNA_03221	0.88	+0.5
3,384,447	+		CCNA_03221	0.88	-0.0
3,384,447	+		CCNA_03221	0.88	-0.9
3,384,452	+		CCNA_03221	0.89	-0.4
3,384,455	-		CCNA_03221	0.89	+1.5
3,384,455	-		CCNA_03221	0.89	+0.4
3,384,455	-		CCNA_03221	0.89	-0.4
3,384,455	-		CCNA_03221	0.89	-0.4
3,384,513	-				-0.1
3,384,515	-				+0.0
3,384,515	-				+1.0
3,384,559	+				+0.1
3,384,579	-				+0.1
3,384,602	-				+0.2
3,384,607	+				+0.5
3,384,673	+				+0.1
3,384,675	+				+0.4
3,384,677	+				+1.5
3,384,681	-				-0.3
3,384,685	-				-1.7
3,384,691	-				-0.3
3,384,691	-				+1.3
3,384,708	+				+0.3
3,384,722	+				+2.7
3,384,797	+				+1.1
3,384,823	+		CCNA_03222	0.10	+0.9
3,384,823	+		CCNA_03222	0.10	-1.0
3,384,824	+		CCNA_03222	0.10	+1.4
3,384,824	+		CCNA_03222	0.10	-0.5
3,384,824	+		CCNA_03222	0.10	+0.1
3,384,844	+		CCNA_03222	0.12	+1.3
3,384,854	+		CCNA_03222	0.13	-0.4
3,384,859	+		CCNA_03222	0.13	+1.3
3,384,859	+		CCNA_03222	0.13	+2.0
3,384,859	+		CCNA_03222	0.13	+1.0
3,384,859	+		CCNA_03222	0.13	+0.2
3,384,867	-		CCNA_03222	0.14	+1.5
3,384,918	-		CCNA_03222	0.18	+1.3
3,384,925	+		CCNA_03222	0.19	-1.4
3,384,925	+		CCNA_03222	0.19	+0.5
3,384,941	-		CCNA_03222	0.20	+1.5
3,384,953	+		CCNA_03222	0.21	+0.1
3,385,074	-		CCNA_03222	0.31	+1.6
3,385,079	-		CCNA_03222	0.31	-0.6
3,385,082	+		CCNA_03222	0.32	+2.1
3,385,089	+		CCNA_03222	0.32	+2.6
3,385,089	-		CCNA_03222	0.32	+0.2
3,385,094	+		CCNA_03222	0.33	-1.5
3,385,097	-		CCNA_03222	0.33	+0.2
3,385,143	+		CCNA_03222	0.37	+0.6
3,385,162	-		CCNA_03222	0.38	+1.2
3,385,242	-		CCNA_03222	0.45	+1.4
3,385,268	-		CCNA_03222	0.47	+0.3
3,385,274	+		CCNA_03222	0.47	+0.8
3,385,298	-		CCNA_03222	0.49	-0.2
3,385,316	-		CCNA_03222	0.51	-1.3
3,385,372	+		CCNA_03222	0.55	+1.5
3,385,380	-		CCNA_03222	0.56	-0.2
3,385,417	+		CCNA_03222	0.59	-1.4
3,385,433	+		CCNA_03222	0.60	-1.3
3,385,438	+		CCNA_03222	0.61	-0.6
3,385,441	-		CCNA_03222	0.61	+1.0
3,385,446	-		CCNA_03222	0.62	+0.3
3,385,491	+		CCNA_03222	0.65	-0.4
3,385,491	+		CCNA_03222	0.65	-0.2
3,385,524	+		CCNA_03222	0.68	-0.2
3,385,542	-		CCNA_03222	0.69	+1.1
3,385,566	+		CCNA_03222	0.71	+0.8
3,385,566	+		CCNA_03222	0.71	+1.0
3,385,566	+		CCNA_03222	0.71	-0.7
3,385,574	-		CCNA_03222	0.72	-2.0
3,385,574	-		CCNA_03222	0.72	+0.1
3,385,574	-		CCNA_03222	0.72	-0.8
3,385,610	-		CCNA_03222	0.75	+1.3
3,385,627	+		CCNA_03222	0.76	-0.4
3,385,636	+		CCNA_03222	0.77	+2.0