Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03167

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,324,806	-				+2.0
3,324,806	-		CCNA_03165	0.88	+0.1
3,324,816	-		CCNA_03165	0.89	+1.4
3,324,835	+				+0.1
3,324,938	-				-0.8
3,324,978	+				+0.2
3,324,985	-				-2.2
3,325,031	+				+0.2
3,325,031	+				+1.4
3,325,031	+				-1.9
3,325,031	+				+0.3
3,325,031	+				-1.0
3,325,031	+				+0.5
3,325,031	+				-0.7
3,325,039	-				+0.4
3,325,039	-				+1.5
3,325,039	-				+0.0
3,325,039	-				-1.2
3,325,043	+				+0.6
3,325,074	+				+1.2
3,325,106	+				+0.2
3,325,146	+		CCNA_03166	0.14	-0.4
3,325,146	+		CCNA_03166	0.14	+0.4
3,325,146	+		CCNA_03166	0.14	-0.4
3,325,146	+		CCNA_03166	0.14	+2.0
3,325,146	+		CCNA_03166	0.14	+0.3
3,325,154	-		CCNA_03166	0.15	+0.1
3,325,154	-		CCNA_03166	0.15	+0.7
3,325,154	-		CCNA_03166	0.15	+1.1
3,325,159	-		CCNA_03166	0.16	-0.5
3,325,204	-		CCNA_03166	0.22	-0.1
3,325,220	+		CCNA_03166	0.25	+0.2
3,325,262	+		CCNA_03166	0.30	-0.4
3,325,287	+		CCNA_03166	0.34	-0.5
3,325,344	+		CCNA_03166	0.42	+1.3
3,325,344	+		CCNA_03166	0.42	-1.2
3,325,344	+		CCNA_03166	0.42	-0.9
3,325,349	+		CCNA_03166	0.43	+0.4
3,325,351	+		CCNA_03166	0.43	+1.0
3,325,352	-		CCNA_03166	0.43	-1.1
3,325,412	+		CCNA_03166	0.52	+0.4
3,325,417	+		CCNA_03166	0.52	-1.2
3,325,490	+		CCNA_03166	0.63	+0.3
3,325,526	-		CCNA_03166	0.68	-0.2
3,325,527	-		CCNA_03166	0.68	+0.9
3,325,527	-		CCNA_03166	0.68	-0.5
3,325,531	-		CCNA_03166	0.69	+0.1
3,325,543	+		CCNA_03166	0.70	-1.0
3,325,543	+		CCNA_03166	0.70	-0.9
3,325,551	-		CCNA_03166	0.71	-1.2
3,325,551	-		CCNA_03166	0.71	-0.8
3,325,558	+		CCNA_03166	0.72	+0.3
3,325,561	-		CCNA_03166	0.73	+0.7
3,325,561	-		CCNA_03166	0.73	-0.1
3,325,570	-		CCNA_03166	0.74	+0.5
3,325,570	-		CCNA_03166	0.74	+0.8
3,325,587	-		CCNA_03166	0.77	+1.1
3,325,666	+		CCNA_03166	0.88	+0.0
3,325,687	+				+0.3
3,325,700	+				+2.0
3,325,714	+				+0.3
3,325,720	+				+0.3
3,325,721	-				+0.3
3,325,722	-				+0.8
3,325,722	-				+1.2
3,325,728	-				+0.1
3,325,746	+				-1.3
3,325,746	+				-1.4
3,325,754	-				+1.8
3,325,754	-				+0.9
3,325,754	-				-0.1
3,325,764	-				-0.1
3,325,776	+				+0.0
3,325,784	-				+0.8
3,325,809	-				+0.3
3,325,814	+				+0.2
3,325,814	+				+0.6
3,325,822	-				-0.7
3,325,822	-				-0.8
3,325,891	+		CCNA_03167	0.13	+1.7
3,325,899	-		CCNA_03167	0.14	+2.5
3,325,899	-		CCNA_03167	0.14	+0.3
3,325,899	-		CCNA_03167	0.14	+1.0
3,325,906	+		CCNA_03167	0.15	-0.1
3,325,908	+		CCNA_03167	0.15	+1.2
3,325,908	+		CCNA_03167	0.15	+0.0
3,325,914	-		CCNA_03167	0.16	+1.5
3,325,916	-		CCNA_03167	0.16	+1.5
3,325,926	-		CCNA_03167	0.18	-0.3
3,325,956	-		CCNA_03167	0.21	+2.2
3,325,973	+		CCNA_03167	0.23	+0.4
3,325,973	+		CCNA_03167	0.23	-0.2
3,325,981	-		CCNA_03167	0.24	+0.5
3,325,981	-		CCNA_03167	0.24	+1.5
3,325,994	-		CCNA_03167	0.25	+0.3
3,325,995	+		CCNA_03167	0.26	+1.3
3,326,077	+		CCNA_03167	0.35	-0.5
3,326,104	+		CCNA_03167	0.38	-0.2
3,326,109	+		CCNA_03167	0.39	+0.9
3,326,112	-		CCNA_03167	0.39	+1.5
3,326,117	+		CCNA_03167	0.40	+0.1
3,326,117	+		CCNA_03167	0.40	+0.2
3,326,243	-		CCNA_03167	0.55	+2.3
3,326,246	+		CCNA_03167	0.55	-0.2
3,326,246	+		CCNA_03167	0.55	+0.9
3,326,293	+		CCNA_03167	0.60	+2.2
3,326,301	-		CCNA_03167	0.61	-0.6
3,326,311	-		CCNA_03167	0.63	+1.3
3,326,326	+		CCNA_03167	0.64	-1.4
3,326,334	-		CCNA_03167	0.65	+0.8
3,326,352	+		CCNA_03167	0.67	+0.9
3,326,360	-		CCNA_03167	0.68	+1.4
3,326,368	+		CCNA_03167	0.69	-0.4
3,326,368	+		CCNA_03167	0.69	-1.8
3,326,383	+		CCNA_03167	0.71	-1.4
3,326,393	+		CCNA_03167	0.72	+0.8
3,326,393	+		CCNA_03167	0.72	+0.8
3,326,393	+		CCNA_03167	0.72	-0.5
3,326,431	-		CCNA_03167	0.77	+1.1
3,326,515	+		CCNA_03167	0.86	+0.8
3,326,518	-		CCNA_03167	0.87	+0.9
3,326,523	-		CCNA_03167	0.87	-0.1
3,326,523	-		CCNA_03167	0.87	-0.7
3,326,523	-		CCNA_03167	0.87	+1.2
3,326,555	+				-0.3
3,326,565	+				+3.3
3,326,573	-				+1.2
3,326,573	-				-0.3
3,326,611	+				-0.7
3,326,621	+				-0.7
3,326,638	+				+0.3
3,326,646	-				+0.4
3,326,758	-				+1.8
3,326,869	-				+2.0
3,326,892	-				+0.3
3,326,896	+				+1.6
3,326,897	-				+2.8
3,326,909	+				+3.1
3,326,909	+				+2.9
3,326,909	+				+3.7
3,326,917	-				+0.7
3,326,917	-				-0.6
3,326,917	-				-0.3
3,327,003	+		CCNA_03168	0.15	+1.1
3,327,060	+		CCNA_03168	0.22	-3.2
3,327,114	+		CCNA_03168	0.29	+0.9
3,327,122	-		CCNA_03168	0.29	-0.1
3,327,169	+		CCNA_03168	0.35	+0.1
3,327,192	-		CCNA_03168	0.38	-0.2
3,327,197	-		CCNA_03168	0.38	+2.1
3,327,203	+		CCNA_03168	0.39	+0.3
3,327,237	+		CCNA_03168	0.43	+0.8
3,327,242	+		CCNA_03168	0.44	-0.4
3,327,264	+		CCNA_03168	0.46	-0.1
3,327,272	-		CCNA_03168	0.47	+0.5
3,327,297	+		CCNA_03168	0.50	+0.3
3,327,305	-		CCNA_03168	0.51	+1.0
3,327,307	+		CCNA_03168	0.51	-1.5
3,327,329	+		CCNA_03168	0.54	-0.2
3,327,331	+		CCNA_03168	0.54	+2.3
3,327,341	-		CCNA_03168	0.55	-0.4
3,327,361	-		CCNA_03168	0.58	+2.3
3,327,407	+		CCNA_03168	0.63	+1.8
3,327,407	-		CCNA_03168	0.63	+0.9
3,327,459	-		CCNA_03168	0.69	-0.8
3,327,478	-		CCNA_03168	0.71	-0.5
3,327,488	-		CCNA_03168	0.72	-0.4
3,327,501	-		CCNA_03168	0.74	+2.6
3,327,513	-		CCNA_03168	0.75	+0.8
3,327,532	-		CCNA_03168	0.78	+1.5
3,327,556	-		CCNA_03168	0.80	+1.0
3,327,558	-		CCNA_03168	0.81	-0.7
3,327,580	-		CCNA_03168	0.83	+0.8
3,327,615	-		CCNA_03168	0.87	-1.7