Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03144

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,295,493	-		CCNA_03143	0.50	-0.0
3,295,493	-		CCNA_03143	0.50	+0.5
3,295,493	-		CCNA_03143	0.50	-1.7
3,295,493	-		CCNA_03143	0.50	-0.7
3,295,493	-		CCNA_03143	0.50	+2.3
3,295,514	+		CCNA_03143	0.52	+1.3
3,295,528	-		CCNA_03143	0.52	+0.2
3,295,545	+		CCNA_03143	0.53	-1.6
3,295,552	-		CCNA_03143	0.54	+0.2
3,295,552	-		CCNA_03143	0.54	+0.3
3,295,566	+		CCNA_03143	0.54	+2.0
3,295,574	-		CCNA_03143	0.55	+1.2
3,295,574	-		CCNA_03143	0.55	+0.9
3,295,578	+		CCNA_03143	0.55	+1.6
3,295,578	+		CCNA_03143	0.55	+1.3
3,295,578	+		CCNA_03143	0.55	+0.6
3,295,578	+		CCNA_03143	0.55	-0.5
3,295,586	-		CCNA_03143	0.56	+1.3
3,295,586	-		CCNA_03143	0.56	-0.9
3,295,591	-		CCNA_03143	0.56	-0.4
3,295,596	+		CCNA_03143	0.56	+0.3
3,295,614	-		CCNA_03143	0.57	-1.8
3,295,703	-		CCNA_03143	0.62	+1.6
3,295,785	-		CCNA_03143	0.67	+1.5
3,295,808	-		CCNA_03143	0.68	+1.0
3,295,824	+		CCNA_03143	0.69	+1.7
3,295,832	-		CCNA_03143	0.69	-0.0
3,295,843	-		CCNA_03143	0.70	-2.3
3,295,844	+		CCNA_03143	0.70	+1.3
3,295,852	-		CCNA_03143	0.71	+0.2
3,295,852	-		CCNA_03143	0.71	+0.4
3,295,852	-		CCNA_03143	0.71	-0.2
3,295,852	-		CCNA_03143	0.71	+0.7
3,295,854	+		CCNA_03143	0.71	-0.2
3,295,868	+		CCNA_03143	0.72	+2.1
3,295,868	+		CCNA_03143	0.72	+0.4
3,295,876	-		CCNA_03143	0.72	-0.2
3,295,876	-		CCNA_03143	0.72	-0.3
3,295,931	-		CCNA_03143	0.75	-0.7
3,295,942	-		CCNA_03143	0.76	-1.6
3,295,942	-		CCNA_03143	0.76	-0.8
3,295,956	+		CCNA_03143	0.76	+0.7
3,295,961	+		CCNA_03143	0.77	+2.0
3,295,971	+		CCNA_03143	0.77	+0.4
3,295,971	+		CCNA_03143	0.77	-0.9
3,296,004	-		CCNA_03143	0.79	-0.6
3,296,004	-		CCNA_03143	0.79	-0.0
3,296,004	-		CCNA_03143	0.79	-0.9
3,296,027	+		CCNA_03143	0.81	-0.1
3,296,033	+		CCNA_03143	0.81	-0.1
3,296,041	-		CCNA_03143	0.81	+0.9
3,296,067	+		CCNA_03143	0.83	-0.2
3,296,067	+		CCNA_03143	0.83	+0.9
3,296,085	-		CCNA_03143	0.84	+0.5
3,296,138	-		CCNA_03143	0.87	-1.0
3,296,176	+		CCNA_03143	0.89	-1.4
3,296,207	-				+1.1
3,296,210	+				-1.3
3,296,210	+				-0.0
3,296,255	+				-1.9
3,296,263	-				-0.5
3,296,283	-				-0.4
3,296,312	+				-1.3
3,296,320	-				+0.6
3,296,377	+				+1.7
3,296,421	-				+0.1
3,296,435	+				-0.1
3,296,445	+				-0.7
3,296,453	-				+2.9
3,296,453	-				-0.4
3,296,491	+				+0.3
3,296,496	+				+1.0
3,296,496	+				-0.7
3,296,499	-				-0.7
3,296,512	-				-0.2
3,296,524	-				+1.9
3,298,454	-				-0.0
3,298,487	+				+0.1
3,298,503	-				+4.1
3,298,513	-				+0.2
3,298,535	-				+0.5
3,298,535	-				-1.2
3,298,535	-				+0.6
3,298,571	+				-0.0
3,298,591	-				+0.9
3,298,599	-				-0.1
3,298,608	+				-0.8
3,298,630	-				-1.4
3,298,653	+				+1.3
3,298,690	+				-0.3
3,298,701	+				+0.6
3,298,701	+				-1.3
3,298,701	+				+0.7
3,298,701	+				+0.6
3,298,709	-				+1.0
3,298,709	-				-1.0
3,298,730	-				+0.9
3,298,765	-				-1.6
3,298,836	+				+1.4
3,298,836	+				-1.0
3,298,836	+				+1.9
3,298,844	-				-0.7
3,298,862	+				-0.6
3,298,870	-				+0.2
3,298,881	-				-0.6
3,298,883	+				-0.3
3,298,891	-				-2.3
3,298,897	+				+0.0
3,298,913	+				-0.3
3,298,915	-				+0.4
3,298,915	-				+0.1
3,299,032	+				+1.1
3,299,053	-		CCNA_03146	0.11	-0.8
3,299,088	+		CCNA_03146	0.13	+0.9
3,299,088	+		CCNA_03146	0.13	-0.3
3,299,088	+		CCNA_03146	0.13	-0.4
3,299,099	+		CCNA_03146	0.13	-1.4
3,299,155	-		CCNA_03146	0.16	-0.7
3,299,190	-		CCNA_03146	0.18	-0.7
3,299,217	+		CCNA_03146	0.19	+0.7
3,299,317	-		CCNA_03146	0.24	-0.6
3,299,344	+		CCNA_03146	0.26	-0.1
3,299,364	-		CCNA_03146	0.27	+0.7
3,299,380	-		CCNA_03146	0.28	+1.3
3,299,412	-		CCNA_03146	0.29	+0.9
3,299,422	+		CCNA_03146	0.30	+0.9