Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03128

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,275,205	-		CCNA_03127	0.36	-0.1
3,275,208	+		CCNA_03127	0.37	-0.5
3,275,214	+		CCNA_03127	0.37	+1.3
3,275,232	+		CCNA_03127	0.38	+0.8
3,275,238	+		CCNA_03127	0.39	-0.7
3,275,238	+		CCNA_03127	0.39	+0.2
3,275,240	-		CCNA_03127	0.39	+1.0
3,275,321	-		CCNA_03127	0.45	-0.5
3,275,340	+		CCNA_03127	0.47	+2.5
3,275,389	+		CCNA_03127	0.51	+1.7
3,275,416	+		CCNA_03127	0.53	+1.3
3,275,417	-		CCNA_03127	0.53	+2.3
3,275,445	+		CCNA_03127	0.55	+0.5
3,275,447	+		CCNA_03127	0.55	-0.1
3,275,447	+		CCNA_03127	0.55	+0.6
3,275,455	-		CCNA_03127	0.56	-1.4
3,275,512	-		CCNA_03127	0.60	+0.3
3,275,513	-		CCNA_03127	0.60	-1.4
3,275,532	+		CCNA_03127	0.62	+1.5
3,275,584	-		CCNA_03127	0.66	-0.9
3,275,590	-		CCNA_03127	0.66	-0.1
3,275,591	+		CCNA_03127	0.66	-1.4
3,275,591	+		CCNA_03127	0.66	-0.8
3,275,610	-		CCNA_03127	0.68	+0.4
3,275,643	+		CCNA_03127	0.70	-1.6
3,275,651	-		CCNA_03127	0.71	-1.6
3,275,654	+		CCNA_03127	0.71	+2.1
3,275,656	-				+2.3
3,275,656	-		CCNA_03127	0.71	+0.3
3,275,672	-		CCNA_03127	0.72	-1.0
3,275,690	-		CCNA_03127	0.74	+2.0
3,275,713	+		CCNA_03127	0.76	+1.2
3,275,721	-		CCNA_03127	0.76	+1.0
3,275,747	-		CCNA_03127	0.78	+1.8
3,275,747	-		CCNA_03127	0.78	+0.2
3,275,768	+		CCNA_03127	0.80	+1.7
3,275,771	-		CCNA_03127	0.80	-1.5
3,275,791	-		CCNA_03127	0.82	-0.8
3,275,815	+		CCNA_03127	0.83	+1.6
3,275,821	+		CCNA_03127	0.84	+2.0
3,275,859	-		CCNA_03127	0.87	-1.6
3,275,877	-		CCNA_03127	0.88	-0.4
3,275,880	-		CCNA_03127	0.88	-0.3
3,275,887	-		CCNA_03127	0.89	+0.9
3,275,888	+		CCNA_03127	0.89	+2.0
3,275,893	+		CCNA_03127	0.89	+2.3
3,275,893	+		CCNA_03127	0.89	+2.2
3,275,893	+		CCNA_03127	0.89	+1.8
3,275,896	-		CCNA_03127	0.90	-0.0
3,275,901	+				+1.8
3,275,901	-				-0.5
3,275,901	-				+2.0
3,275,913	+				+1.8
3,275,914	-				+2.0
3,275,964	+				+1.4
3,275,973	+				+3.2
3,276,020	+				+2.5
3,276,028	-				+0.7
3,276,035	+				+1.9
3,276,040	+				+1.7
3,276,040	+				+2.8
3,276,045	+				+2.2
3,276,103	-				-0.5
3,276,111	+				+0.4
3,276,123	+				-0.7
3,276,159	+				+0.4
3,276,160	-				+1.4
3,276,221	-				+1.5
3,276,237	-				+1.7
3,276,259	+				+0.3
3,276,264	+				+0.7
3,276,272	-		CCNA_03128	0.10	+2.0
3,276,275	+		CCNA_03128	0.10	+1.9
3,276,365	+		CCNA_03128	0.20	+1.9
3,276,373	-		CCNA_03128	0.21	+1.0
3,276,375	-		CCNA_03128	0.21	+0.0
3,276,409	-		CCNA_03128	0.25	+1.6
3,276,432	+		CCNA_03128	0.27	+2.3
3,276,459	+		CCNA_03128	0.30	-0.7
3,276,478	+		CCNA_03128	0.32	+0.1
3,276,501	+		CCNA_03128	0.35	-1.4
3,276,506	-		CCNA_03128	0.35	-0.8
3,276,532	+		CCNA_03128	0.38	-0.8
3,276,533	+		CCNA_03128	0.38	+1.2
3,276,550	+		CCNA_03128	0.40	-0.3
3,276,550	+		CCNA_03128	0.40	+0.8
3,276,599	-		CCNA_03128	0.45	+0.1
3,276,634	+		CCNA_03128	0.49	-0.1
3,276,786	-		CCNA_03128	0.65	-0.3
3,276,793	-		CCNA_03128	0.66	+0.7
3,276,811	+		CCNA_03128	0.68	+1.5
3,276,814	-		CCNA_03128	0.68	-0.5
3,276,817	+		CCNA_03128	0.68	+1.1
3,276,823	+		CCNA_03128	0.69	-0.7
3,276,823	+		CCNA_03128	0.69	+0.3
3,276,823	+		CCNA_03128	0.69	-1.1
3,276,831	-		CCNA_03128	0.70	+1.3
3,276,831	-		CCNA_03128	0.70	+0.1
3,276,831	-		CCNA_03128	0.70	+1.2
3,276,831	-		CCNA_03128	0.70	+2.3
3,276,868	-		CCNA_03128	0.74	-0.3
3,276,925	-		CCNA_03128	0.80	+0.0
3,276,974	+		CCNA_03128	0.85	-0.9
3,276,982	-		CCNA_03128	0.86	-0.5
3,276,999	-		CCNA_03128	0.88	-0.4
3,277,033	+				+0.1
3,277,042	-				+1.9
3,277,046	+				-1.5
3,277,051	+				-0.7
3,277,051	+				+0.5
3,277,051	+				+0.2
3,277,054	-				+0.7
3,277,064	-				-0.5
3,277,070	+				-0.1
3,277,085	+				+0.0
3,277,085	+				+1.6
3,277,085	+				-0.0
3,277,085	+				-0.2
3,277,085	+				+0.2
3,277,085	+				-0.1
3,277,085	+				+1.3
3,277,085	+				+2.1
3,277,093	-				+0.4
3,277,093	-				+0.6
3,277,093	-				-1.2
3,277,093	-				+1.3
3,277,093	-				+0.5
3,277,093	-				+0.6
3,277,093	-				-0.8
3,277,093	-				+0.1
3,277,093	-				+1.5
3,277,093	-				+2.4
3,277,093	-				-0.0
3,277,093	-				-1.0
3,277,093	-				-0.6
3,277,093	-				+2.0
3,277,093	-				+0.7
3,277,105	+				+0.5
3,277,120	+				-0.6
3,277,120	+				+2.4
3,277,120	+				+0.8
3,277,128	-				+1.4
3,277,128	-				-0.0
3,277,198	-				-0.6
3,277,203	+				-0.4
3,277,211	-				-0.0
3,277,226	+				-0.3
3,277,273	-				+1.1
3,277,273	-				+2.0
3,277,314	+				+1.2
3,277,318	+				-1.4
3,277,323	+				-1.7
3,277,328	+				-2.0
3,277,360	+				+2.0
3,277,368	-				+2.7
3,277,368	-				+3.0
3,277,368	-				+3.0
3,277,379	+				-0.1
3,277,379	+				-1.0
3,277,455	-		CCNA_03129	0.10	+4.1
3,277,462	+		CCNA_03129	0.11	+1.9
3,277,462	+		CCNA_03129	0.11	+1.7
3,277,470	-		CCNA_03129	0.11	+4.7
3,277,480	+		CCNA_03129	0.12	+0.7
3,277,488	-		CCNA_03129	0.12	+3.7
3,277,488	-		CCNA_03129	0.12	+4.2
3,277,537	-		CCNA_03129	0.16	+4.7
3,277,555	-		CCNA_03129	0.17	+4.6
3,277,571	+		CCNA_03129	0.19	+3.4
3,277,580	-		CCNA_03129	0.19	+4.1
3,277,608	-		CCNA_03129	0.21	+3.8
3,277,623	-		CCNA_03129	0.22	+4.4
3,277,634	-		CCNA_03129	0.23	+4.2
3,277,641	-		CCNA_03129	0.24	+4.5
3,277,655	-		CCNA_03129	0.25	+4.1
3,277,703	-		CCNA_03129	0.28	+4.4
3,277,746	-		CCNA_03129	0.31	+4.3
3,277,780	-		CCNA_03129	0.34	+4.5
3,277,795	-		CCNA_03129	0.35	+5.0
3,277,801	-		CCNA_03129	0.35	+4.7
3,277,830	-		CCNA_03129	0.37	+4.6
3,277,844	+		CCNA_03129	0.38	+1.6
3,277,913	+		CCNA_03129	0.43	+0.8
3,277,920	+		CCNA_03129	0.44	+2.1
3,277,958	-		CCNA_03129	0.47	+4.6
3,277,958	-		CCNA_03129	0.47	+4.4
3,277,966	+		CCNA_03129	0.47	-0.1
3,277,992	-		CCNA_03129	0.49	+4.0
3,278,033	+		CCNA_03129	0.52	+0.8
3,278,081	+		CCNA_03129	0.56	+1.3
3,278,099	+		CCNA_03129	0.57	+1.6