Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03127

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,273,746	+		CCNA_03126	0.62	+0.1
3,273,814	+		CCNA_03126	0.66	+0.1
3,273,846	+		CCNA_03126	0.67	-1.3
3,273,848	-		CCNA_03126	0.67	+1.8
3,273,853	-		CCNA_03126	0.68	-1.2
3,273,948	+		CCNA_03126	0.72	+0.2
3,273,954	+		CCNA_03126	0.72	-0.7
3,273,962	+		CCNA_03126	0.73	-0.2
3,273,962	-		CCNA_03126	0.73	+0.4
3,273,962	-		CCNA_03126	0.73	-0.1
3,273,984	+		CCNA_03126	0.74	-1.2
3,273,984	+				+3.8
3,274,031	+		CCNA_03126	0.76	-0.5
3,274,049	-		CCNA_03126	0.77	-0.1
3,274,049	-		CCNA_03126	0.77	-0.3
3,274,091	+		CCNA_03126	0.79	-1.2
3,274,099	-		CCNA_03126	0.79	-0.1
3,274,110	+		CCNA_03126	0.80	-0.4
3,274,118	-		CCNA_03126	0.80	+0.1
3,274,121	-		CCNA_03126	0.81	+0.3
3,274,135	+		CCNA_03126	0.81	-0.2
3,274,163	+		CCNA_03126	0.83	+1.0
3,274,163	+		CCNA_03126	0.83	+1.2
3,274,171	-		CCNA_03126	0.83	-0.0
3,274,222	-		CCNA_03126	0.85	-0.6
3,274,359	-				-1.2
3,274,361	-				+0.1
3,274,366	+				-0.1
3,274,376	+				+0.1
3,274,379	+				+1.2
3,274,394	+				-2.1
3,274,394	+				-0.5
3,274,402	-				-0.5
3,274,413	+				+0.8
3,274,421	-				+1.2
3,274,421	-				+2.3
3,274,454	-				+1.7
3,274,463	-				-1.0
3,274,464	-				+3.3
3,274,466	+				+0.4
3,274,507	+				-1.2
3,274,515	-				+0.7
3,274,524	-				+0.0
3,274,529	+				+0.7
3,274,629	+				+0.1
3,274,637	-				+1.6
3,274,674	+				+1.7
3,274,689	+				+1.0
3,274,696	+				-0.3
3,274,696	+				-0.4
3,274,697	-				+1.5
3,274,704	-				+0.3
3,274,704	-				-0.2
3,274,704	-				-0.2
3,274,704	-				-0.1
3,274,704	-				-0.5
3,274,704	-				+2.0
3,274,704	-				+0.6
3,274,715	+				-1.7
3,274,715	+				-0.7
3,274,737	+				-0.3
3,274,759	-				-0.1
3,274,766	+				-0.0
3,274,766	+				-0.9
3,274,771	+				-0.2
3,274,774	-				+0.7
3,274,853	+				+1.2
3,274,861	-				+0.5
3,274,908	+		CCNA_03127	0.14	-1.3
3,274,910	+		CCNA_03127	0.14	+0.7
3,274,910	+		CCNA_03127	0.14	+0.6
3,274,918	-		CCNA_03127	0.14	+0.9
3,274,941	+		CCNA_03127	0.16	+1.4
3,274,947	-		CCNA_03127	0.17	+0.2
3,274,949	-		CCNA_03127	0.17	-1.2
3,274,954	-		CCNA_03127	0.17	+0.7
3,274,959	+		CCNA_03127	0.17	+0.8
3,274,959	-		CCNA_03127	0.17	+0.8
3,274,988	+		CCNA_03127	0.20	+1.5
3,274,993	+		CCNA_03127	0.20	+1.1
3,274,993	+		CCNA_03127	0.20	-0.0
3,274,998	+		CCNA_03127	0.20	+1.0
3,275,001	-		CCNA_03127	0.21	+0.3
3,275,022	+				+1.7
3,275,061	+		CCNA_03127	0.25	+2.1
3,275,061	-		CCNA_03127	0.25	+4.0
3,275,069	-		CCNA_03127	0.26	-0.4
3,275,084	+		CCNA_03127	0.27	+0.9
3,275,094	+		CCNA_03127	0.28	+0.5
3,275,100	-		CCNA_03127	0.28	-0.8
3,275,102	-		CCNA_03127	0.28	-0.3
3,275,102	-		CCNA_03127	0.28	+2.1
3,275,102	-		CCNA_03127	0.28	+1.5
3,275,102	-		CCNA_03127	0.28	+1.0
3,275,144	+		CCNA_03127	0.32	+1.7
3,275,205	-		CCNA_03127	0.36	-0.1
3,275,208	+		CCNA_03127	0.37	-0.5
3,275,214	+		CCNA_03127	0.37	+1.3
3,275,232	+		CCNA_03127	0.38	+0.8
3,275,238	+		CCNA_03127	0.39	-0.7
3,275,238	+		CCNA_03127	0.39	+0.2
3,275,240	-		CCNA_03127	0.39	+1.0
3,275,321	-		CCNA_03127	0.45	-0.5
3,275,340	+		CCNA_03127	0.47	+2.5
3,275,389	+		CCNA_03127	0.51	+1.7
3,275,416	+		CCNA_03127	0.53	+1.3
3,275,417	-		CCNA_03127	0.53	+2.3
3,275,445	+		CCNA_03127	0.55	+0.5
3,275,447	+		CCNA_03127	0.55	-0.1
3,275,447	+		CCNA_03127	0.55	+0.6
3,275,455	-		CCNA_03127	0.56	-1.4
3,275,512	-		CCNA_03127	0.60	+0.3
3,275,513	-		CCNA_03127	0.60	-1.4
3,275,532	+		CCNA_03127	0.62	+1.5
3,275,584	-		CCNA_03127	0.66	-0.9
3,275,590	-		CCNA_03127	0.66	-0.1
3,275,591	+		CCNA_03127	0.66	-1.4
3,275,591	+		CCNA_03127	0.66	-0.8
3,275,610	-		CCNA_03127	0.68	+0.4
3,275,643	+		CCNA_03127	0.70	-1.6
3,275,651	-		CCNA_03127	0.71	-1.6
3,275,654	+		CCNA_03127	0.71	+2.1
3,275,656	-				+2.3
3,275,656	-		CCNA_03127	0.71	+0.3
3,275,672	-		CCNA_03127	0.72	-1.0
3,275,690	-		CCNA_03127	0.74	+2.0
3,275,713	+		CCNA_03127	0.76	+1.2
3,275,721	-		CCNA_03127	0.76	+1.0
3,275,747	-		CCNA_03127	0.78	+1.8
3,275,747	-		CCNA_03127	0.78	+0.2
3,275,768	+		CCNA_03127	0.80	+1.7
3,275,771	-		CCNA_03127	0.80	-1.5
3,275,791	-		CCNA_03127	0.82	-0.8
3,275,815	+		CCNA_03127	0.83	+1.6
3,275,821	+		CCNA_03127	0.84	+2.0
3,275,859	-		CCNA_03127	0.87	-1.6
3,275,877	-		CCNA_03127	0.88	-0.4
3,275,880	-		CCNA_03127	0.88	-0.3
3,275,887	-		CCNA_03127	0.89	+0.9
3,275,888	+		CCNA_03127	0.89	+2.0
3,275,893	+		CCNA_03127	0.89	+2.3
3,275,893	+		CCNA_03127	0.89	+2.2
3,275,893	+		CCNA_03127	0.89	+1.8
3,275,896	-		CCNA_03127	0.90	-0.0
3,275,901	+				+1.8
3,275,901	-				-0.5
3,275,901	-				+2.0
3,275,913	+				+1.8
3,275,914	-				+2.0
3,275,964	+				+1.4
3,275,973	+				+3.2
3,276,020	+				+2.5
3,276,028	-				+0.7
3,276,035	+				+1.9
3,276,040	+				+1.7
3,276,040	+				+2.8
3,276,045	+				+2.2
3,276,103	-				-0.5
3,276,111	+				+0.4
3,276,123	+				-0.7
3,276,159	+				+0.4
3,276,160	-				+1.4
3,276,221	-				+1.5
3,276,237	-				+1.7
3,276,259	+				+0.3
3,276,264	+				+0.7
3,276,272	-		CCNA_03128	0.10	+2.0
3,276,275	+		CCNA_03128	0.10	+1.9
3,276,365	+		CCNA_03128	0.20	+1.9
3,276,373	-		CCNA_03128	0.21	+1.0
3,276,375	-		CCNA_03128	0.21	+0.0
3,276,409	-		CCNA_03128	0.25	+1.6
3,276,432	+		CCNA_03128	0.27	+2.3
3,276,459	+		CCNA_03128	0.30	-0.7
3,276,478	+		CCNA_03128	0.32	+0.1
3,276,501	+		CCNA_03128	0.35	-1.4
3,276,506	-		CCNA_03128	0.35	-0.8
3,276,532	+		CCNA_03128	0.38	-0.8
3,276,533	+		CCNA_03128	0.38	+1.2
3,276,550	+		CCNA_03128	0.40	-0.3
3,276,550	+		CCNA_03128	0.40	+0.8
3,276,599	-		CCNA_03128	0.45	+0.1
3,276,634	+		CCNA_03128	0.49	-0.1
3,276,786	-		CCNA_03128	0.65	-0.3
3,276,793	-		CCNA_03128	0.66	+0.7
3,276,811	+		CCNA_03128	0.68	+1.5
3,276,814	-		CCNA_03128	0.68	-0.5
3,276,817	+		CCNA_03128	0.68	+1.1
3,276,823	+		CCNA_03128	0.69	-0.7
3,276,823	+		CCNA_03128	0.69	+0.3
3,276,823	+		CCNA_03128	0.69	-1.1
3,276,831	-		CCNA_03128	0.70	+1.3
3,276,831	-		CCNA_03128	0.70	+0.1
3,276,831	-		CCNA_03128	0.70	+1.2
3,276,831	-		CCNA_03128	0.70	+2.3
3,276,868	-		CCNA_03128	0.74	-0.3
3,276,925	-		CCNA_03128	0.80	+0.0
3,276,974	+		CCNA_03128	0.85	-0.9
3,276,982	-		CCNA_03128	0.86	-0.5
3,276,999	-		CCNA_03128	0.88	-0.4