Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03120

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,267,079	+		CCNA_03118	0.15	+1.5
3,267,092	-				+2.3
3,267,132	-		CCNA_03118	0.37	-1.0
3,267,180	-		CCNA_03118	0.57	-0.6
3,267,210	-		CCNA_03118	0.70	+1.4
3,267,213	+		CCNA_03118	0.71	-0.3
3,267,214	+		CCNA_03118	0.71	-1.1
3,267,221	-		CCNA_03118	0.74	+1.5
3,267,259	+				+0.7
3,267,281	+				+0.5
3,267,382	+				-0.6
3,267,385	-				-0.4
3,267,397	-				-0.3
3,267,407	-				+3.3
3,267,433	+				+1.0
3,267,436	-				+2.5
3,267,436	-				+2.5
3,267,463	+				+0.0
3,267,482	+				+0.1
3,267,490	-				+1.8
3,267,550	-		CCNA_03119	0.17	+2.1
3,267,576	+		CCNA_03119	0.23	-2.1
3,267,584	-		CCNA_03119	0.25	+1.5
3,267,584	-		CCNA_03119	0.25	+2.4
3,267,604	+		CCNA_03119	0.30	-0.7
3,267,615	-		CCNA_03119	0.33	+1.8
3,267,621	-		CCNA_03119	0.34	+2.1
3,267,731	-		CCNA_03119	0.62	+0.7
3,267,826	-		CCNA_03119	0.86	+1.4
3,267,868	-				+0.7
3,267,899	-				+1.8
3,267,904	-				-0.4
3,267,976	-				+1.3
3,267,986	+				+0.3
3,267,991	+				+0.3
3,267,991	+				+1.0
3,267,999	-				-1.1
3,268,024	+				+1.9
3,268,032	-				-0.0
3,268,032	-				-0.5
3,268,032	-				-1.5
3,268,045	+				+1.7
3,268,072	+				+0.3
3,268,080	-				+1.1
3,268,080	-				+0.0
3,268,080	-				-0.9
3,268,090	-				-1.6
3,268,097	+				+3.6
3,268,097	+				+0.7
3,268,101	+				+1.8
3,268,110	-				+1.9
3,268,137	+		CCNA_03120	0.13	+3.1
3,268,138	+		CCNA_03120	0.13	+3.9
3,268,153	-		CCNA_03120	0.16	+0.7
3,268,158	+		CCNA_03120	0.17	+3.0
3,268,166	-		CCNA_03120	0.19	+0.4
3,268,200	-		CCNA_03120	0.26	-1.2
3,268,273	-		CCNA_03120	0.42	-1.6
3,268,287	+		CCNA_03120	0.44	+3.1
3,268,288	+		CCNA_03120	0.45	+3.1
3,268,290	-		CCNA_03120	0.45	+1.1
3,268,295	-		CCNA_03120	0.46	-1.1
3,268,295	-		CCNA_03120	0.46	-0.5
3,268,295	-		CCNA_03120	0.46	-1.4
3,268,310	-		CCNA_03120	0.49	+0.4
3,268,315	+		CCNA_03120	0.50	+3.3
3,268,320	+		CCNA_03120	0.51	+3.3
3,268,328	-		CCNA_03120	0.53	-2.4
3,268,383	-		CCNA_03120	0.65	+0.6
3,268,383	-		CCNA_03120	0.65	-0.5
3,268,387	-		CCNA_03120	0.65	+0.1
3,268,397	+		CCNA_03120	0.68	+3.1
3,268,415	-		CCNA_03120	0.71	-0.5
3,268,415	-		CCNA_03120	0.71	-0.7
3,268,428	+		CCNA_03120	0.74	+3.1
3,268,464	+		CCNA_03120	0.82	+3.5
3,268,469	-		CCNA_03120	0.83	+1.5
3,268,481	-		CCNA_03120	0.85	+0.7
3,268,539	-				+0.7
3,268,590	+		CCNA_03121	0.12	+1.7
3,268,594	+		CCNA_03121	0.13	+1.5
3,268,637	-		CCNA_03121	0.30	-1.3
3,268,647	-		CCNA_03121	0.34	-1.7
3,268,669	+		CCNA_03121	0.42	+0.9
3,268,671	-		CCNA_03121	0.43	-0.5
3,268,677	-		CCNA_03121	0.45	+1.0
3,268,711	-		CCNA_03121	0.58	-0.3
3,268,743	+		CCNA_03121	0.70	+0.7
3,268,762	-		CCNA_03121	0.78	+0.4
3,268,787	-		CCNA_03121	0.87	+0.3
3,268,798	-				-0.8
3,268,843	-				+0.1
3,268,880	+		CCNA_03122	0.11	+0.7
3,268,908	+		CCNA_03122	0.15	+0.9
3,268,915	-		CCNA_03122	0.16	+0.2
3,268,931	-		CCNA_03122	0.19	+1.4
3,268,931	-		CCNA_03122	0.19	+1.2
3,268,972	+		CCNA_03122	0.25	+1.3
3,268,987	-		CCNA_03122	0.27	+1.0
3,269,010	-		CCNA_03122	0.30	+0.1
3,269,017	+		CCNA_03122	0.31	+1.2
3,269,025	-		CCNA_03122	0.33	+2.4
3,269,040	-		CCNA_03122	0.35	+1.4
3,269,045	-		CCNA_03122	0.36	-1.5
3,269,054	+		CCNA_03122	0.37	+0.9
3,269,059	+		CCNA_03122	0.38	+0.3
3,269,062	-		CCNA_03122	0.38	+0.2
3,269,068	-		CCNA_03122	0.39	-1.0
3,269,071	+		CCNA_03122	0.39	+0.2
3,269,071	+		CCNA_03122	0.39	-0.3
3,269,074	-		CCNA_03122	0.40	+2.5
3,269,076	+		CCNA_03122	0.40	+1.5
3,269,079	-		CCNA_03122	0.41	+1.2
3,269,081	+		CCNA_03122	0.41	-1.1
3,269,081	+		CCNA_03122	0.41	-1.3
3,269,089	-		CCNA_03122	0.42	+0.0
3,269,089	-		CCNA_03122	0.42	+1.0
3,269,092	+		CCNA_03122	0.42	-0.1
3,269,092	+		CCNA_03122	0.42	-0.6
3,269,092	+		CCNA_03122	0.42	-1.5
3,269,092	+		CCNA_03122	0.42	-0.4
3,269,100	-		CCNA_03122	0.44	-1.7
3,269,100	-		CCNA_03122	0.44	+0.2
3,269,100	-		CCNA_03122	0.44	+0.6
3,269,100	-		CCNA_03122	0.44	+0.3
3,269,100	-		CCNA_03122	0.44	+1.5
3,269,105	-		CCNA_03122	0.44	+0.1
3,269,129	+		CCNA_03122	0.48	+0.8
3,269,130	+		CCNA_03122	0.48	-0.1
3,269,139	+		CCNA_03122	0.49	+2.3
3,269,144	+		CCNA_03122	0.50	-0.7
3,269,144	+		CCNA_03122	0.50	-0.3
3,269,152	-		CCNA_03122	0.51	-2.4
3,269,152	-		CCNA_03122	0.51	-1.3
3,269,155	+		CCNA_03122	0.52	+0.5
3,269,162	-		CCNA_03122	0.53	-0.7
3,269,162	-		CCNA_03122	0.53	-0.2
3,269,162	-		CCNA_03122	0.53	-0.4
3,269,177	-		CCNA_03122	0.55	+0.4
3,269,199	-		CCNA_03122	0.58	+1.8
3,269,199	-		CCNA_03122	0.58	+0.8
3,269,217	+		CCNA_03122	0.61	+0.1
3,269,225	-		CCNA_03122	0.62	+0.4
3,269,255	-		CCNA_03122	0.67	+0.2
3,269,266	-		CCNA_03122	0.68	+0.7
3,269,266	-		CCNA_03122	0.68	-1.1
3,269,266	-		CCNA_03122	0.68	-0.2
3,269,269	+		CCNA_03122	0.69	+1.0
3,269,269	+		CCNA_03122	0.69	+1.0
3,269,430	-				+2.9
3,269,462	-				+0.2
3,269,462	-				-0.6
3,269,472	-				+1.7
3,269,474	-				-0.4
3,269,505	+		CCNA_03123	0.10	-0.7
3,269,505	+		CCNA_03123	0.10	+1.0
3,269,513	-		CCNA_03123	0.13	+2.8
3,269,513	-		CCNA_03123	0.13	+3.4
3,269,513	-		CCNA_03123	0.13	+2.9
3,269,513	-		CCNA_03123	0.13	+3.7
3,269,513	-		CCNA_03123	0.13	+3.4
3,269,513	-		CCNA_03123	0.13	+3.2
3,269,513	-		CCNA_03123	0.13	+3.2
3,269,513	-		CCNA_03123	0.13	+3.2
3,269,513	-		CCNA_03123	0.13	+2.8
3,269,513	-		CCNA_03123	0.13	+3.4
3,269,513	-		CCNA_03123	0.13	+3.4
3,269,513	-		CCNA_03123	0.13	+2.9
3,269,513	-		CCNA_03123	0.13	+3.2
3,269,513	-		CCNA_03123	0.13	+3.2
3,269,539	-		CCNA_03123	0.22	+4.6