Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03096

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,244,201	+		CCNA_03095	0.19	-0.4
3,244,237	-		CCNA_03095	0.23	+0.4
3,244,242	-		CCNA_03095	0.23	+0.6
3,244,249	+		CCNA_03095	0.24	-0.5
3,244,249	+		CCNA_03095	0.24	+1.3
3,244,253	+		CCNA_03095	0.25	-0.8
3,244,253	+		CCNA_03095	0.25	+2.0
3,244,253	+		CCNA_03095	0.25	-1.6
3,244,257	-		CCNA_03095	0.25	+0.7
3,244,257	-		CCNA_03095	0.25	-0.9
3,244,261	-		CCNA_03095	0.25	-0.9
3,244,261	-		CCNA_03095	0.25	-0.4
3,244,261	-		CCNA_03095	0.25	+0.4
3,244,261	-		CCNA_03095	0.25	-0.1
3,244,322	+		CCNA_03095	0.31	-2.2
3,244,330	-		CCNA_03095	0.32	+2.1
3,244,331	+		CCNA_03095	0.32	-0.8
3,244,331	+		CCNA_03095	0.32	+0.2
3,244,331	+		CCNA_03095	0.32	+1.4
3,244,331	+		CCNA_03095	0.32	-0.0
3,244,336	+		CCNA_03095	0.33	+0.4
3,244,339	-		CCNA_03095	0.33	-0.7
3,244,339	-		CCNA_03095	0.33	-1.1
3,244,344	-		CCNA_03095	0.33	-0.1
3,244,350	+		CCNA_03095	0.34	+0.8
3,244,350	+		CCNA_03095	0.34	+0.7
3,244,355	+		CCNA_03095	0.35	+0.6
3,244,356	-		CCNA_03095	0.35	-0.1
3,244,357	+		CCNA_03095	0.35	-0.1
3,244,358	-		CCNA_03095	0.35	+0.2
3,244,358	-		CCNA_03095	0.35	-0.7
3,244,388	+				+3.3
3,244,388	+		CCNA_03095	0.38	+1.4
3,244,388	+		CCNA_03095	0.38	-0.1
3,244,396	-		CCNA_03095	0.38	+2.7
3,244,401	+		CCNA_03095	0.39	+1.3
3,244,410	+		CCNA_03095	0.40	-0.5
3,244,412	+		CCNA_03095	0.40	-1.7
3,244,412	+		CCNA_03095	0.40	-1.0
3,244,412	+		CCNA_03095	0.40	+0.5
3,244,418	-		CCNA_03095	0.41	+0.3
3,244,418	-		CCNA_03095	0.41	+1.5
3,244,430	-		CCNA_03095	0.42	-0.7
3,244,440	-		CCNA_03095	0.43	-0.6
3,244,440	-		CCNA_03095	0.43	-0.5
3,244,543	+		CCNA_03095	0.53	+0.0
3,244,559	+		CCNA_03095	0.54	-0.6
3,244,588	+		CCNA_03095	0.57	+0.0
3,244,595	+		CCNA_03095	0.58	+0.8
3,244,596	-		CCNA_03095	0.58	+0.5
3,244,618	-		CCNA_03095	0.60	+1.1
3,244,625	-		CCNA_03095	0.61	-1.0
3,244,625	-		CCNA_03095	0.61	-0.2
3,244,625	-		CCNA_03095	0.61	-2.4
3,244,625	-		CCNA_03095	0.61	+0.6
3,244,625	-		CCNA_03095	0.61	+0.6
3,244,688	+		CCNA_03095	0.67	+1.1
3,244,696	-		CCNA_03095	0.68	-1.7
3,244,698	+		CCNA_03095	0.68	+3.1
3,244,708	+		CCNA_03095	0.69	+0.5
3,244,708	+		CCNA_03095	0.69	-0.2
3,244,708	+		CCNA_03095	0.69	+0.0
3,244,708	+		CCNA_03095	0.69	-2.2
3,244,716	-		CCNA_03095	0.70	+0.1
3,244,716	-		CCNA_03095	0.70	-0.1
3,244,716	-		CCNA_03095	0.70	+1.6
3,244,716	-		CCNA_03095	0.70	+1.2
3,244,716	-		CCNA_03095	0.70	+0.4
3,244,730	-		CCNA_03095	0.71	+0.9
3,244,757	+		CCNA_03095	0.74	-1.3
3,244,765	-		CCNA_03095	0.74	-1.3
3,244,771	-		CCNA_03095	0.75	-0.3
3,244,804	+		CCNA_03095	0.78	+0.9
3,244,810	+		CCNA_03095	0.79	+0.1
3,244,812	-		CCNA_03095	0.79	+1.7
3,244,812	-		CCNA_03095	0.79	-0.4
3,244,812	-		CCNA_03095	0.79	+0.5
3,244,888	+		CCNA_03095	0.86	+0.0
3,244,929	+				+0.8
3,244,949	+				-0.7
3,244,957	-				+0.4
3,244,978	+				+0.2
3,244,978	+				+3.2
3,244,985	-				+0.3
3,244,996	+				+0.1
3,245,000	-				+0.1
3,245,005	-				-0.5
3,245,081	+				-1.2
3,245,086	+				+1.1
3,245,086	+				-1.1
3,245,087	-				+1.0
3,245,094	-				+1.0
3,245,094	-				+0.8
3,245,094	-				+0.1
3,245,104	-				+1.1
3,245,110	+				+1.4
3,245,111	+				+1.6
3,245,111	+				+1.0
3,245,111	+				-0.9
3,245,113	-				-0.8
3,245,119	-				-0.1
3,245,123	+				+0.0
3,245,138	+				+0.4
3,245,146	-				+1.0
3,245,187	+				+1.1
3,245,187	+				+0.4
3,245,195	-				-0.4
3,245,195	-				+2.4
3,245,210	+				-0.3
3,245,218	-				-0.3
3,245,220	+				+1.3
3,245,240	+				+0.2
3,245,248	-				-0.3
3,245,269	+				+0.2
3,245,287	-				-0.5
3,245,336	-				-1.2
3,245,336	-				+1.9
3,245,351	+				+0.5
3,245,351	+				+0.3
3,245,351	+				+1.3
3,245,364	+				+3.1
3,245,364	+				+0.2
3,245,364	+				+0.4
3,245,372	-				-0.4
3,245,382	-				+0.1
3,245,382	-				+0.0
3,245,382	-				-1.0
3,245,400	+				+0.4
3,245,405	+				-0.4
3,245,407	+				+1.3
3,245,417	+				-1.1
3,245,417	+				-0.3
3,245,425	-				-0.1
3,245,445	-		CCNA_03096	0.10	-1.1
3,245,458	+		CCNA_03096	0.11	-0.8
3,245,464	+		CCNA_03096	0.11	+0.4
3,245,467	-		CCNA_03096	0.11	-0.0
3,245,472	-		CCNA_03096	0.11	-1.2
3,245,472	-		CCNA_03096	0.11	-0.0
3,245,475	+		CCNA_03096	0.11	+1.0
3,245,507	+		CCNA_03096	0.13	-2.1
3,245,571	-		CCNA_03096	0.15	-1.6
3,245,571	-		CCNA_03096	0.15	-0.5
3,245,573	-		CCNA_03096	0.15	-1.4
3,245,599	-		CCNA_03096	0.16	+1.4
3,245,627	-		CCNA_03096	0.18	+0.0
3,245,628	+		CCNA_03096	0.18	-0.1
3,245,637	+		CCNA_03096	0.18	+0.1
3,245,674	-		CCNA_03096	0.19	+3.0
3,245,675	-		CCNA_03096	0.19	+0.1
3,245,675	-		CCNA_03096	0.19	+1.5
3,245,696	+		CCNA_03096	0.20	+1.3
3,245,716	-		CCNA_03096	0.21	-0.3
3,245,737	+		CCNA_03096	0.22	+3.3
3,245,748	+		CCNA_03096	0.22	+0.8
3,245,764	-		CCNA_03096	0.23	+0.7
3,245,764	-		CCNA_03096	0.23	+0.1
3,245,798	+		CCNA_03096	0.24	+0.3
3,245,902	+		CCNA_03096	0.29	+0.1
3,245,960	+		CCNA_03096	0.31	-1.9
3,245,960	+		CCNA_03096	0.31	+1.7
3,245,960	+		CCNA_03096	0.31	-0.3
3,245,968	-		CCNA_03096	0.31	+1.2
3,245,968	-		CCNA_03096	0.31	-0.7
3,245,976	-		CCNA_03096	0.32	-1.2
3,246,022	+		CCNA_03096	0.33	-0.9
3,246,028	+		CCNA_03096	0.34	-0.6
3,246,032	+		CCNA_03096	0.34	-1.0
3,246,050	+		CCNA_03096	0.34	-1.5
3,246,050	+		CCNA_03096	0.34	-0.6
3,246,050	+		CCNA_03096	0.34	-0.3
3,246,050	+		CCNA_03096	0.34	+0.2
3,246,050	+		CCNA_03096	0.34	+0.3
3,246,050	+		CCNA_03096	0.34	+1.5
3,246,050	+		CCNA_03096	0.34	-0.2
3,246,050	+		CCNA_03096	0.34	+0.1
3,246,050	+		CCNA_03096	0.34	-0.8
3,246,058	-		CCNA_03096	0.35	-0.6
3,246,058	-		CCNA_03096	0.35	-0.2
3,246,058	-		CCNA_03096	0.35	+1.2
3,246,063	-		CCNA_03096	0.35	-1.9
3,246,063	-		CCNA_03096	0.35	+1.1
3,246,140	-		CCNA_03096	0.38	-0.1
3,246,140	-		CCNA_03096	0.38	-1.0
3,246,167	-		CCNA_03096	0.39	+0.2
3,246,175	+		CCNA_03096	0.40	-2.1
3,246,175	+		CCNA_03096	0.40	+0.4
3,246,175	+		CCNA_03096	0.40	+0.6
3,246,175	+		CCNA_03096	0.40	+0.8
3,246,175	+		CCNA_03096	0.40	+0.3
3,246,183	-		CCNA_03096	0.40	+0.0
3,246,183	-		CCNA_03096	0.40	+0.8
3,246,183	-		CCNA_03096	0.40	+1.7
3,246,212	-		CCNA_03096	0.41	-1.5
3,246,214	+		CCNA_03096	0.41	-1.7
3,246,303	+		CCNA_03096	0.45	-1.1
3,246,311	-		CCNA_03096	0.45	+1.3
3,246,313	+		CCNA_03096	0.45	+0.8
3,246,318	+		CCNA_03096	0.45	-1.5
3,246,326	-		CCNA_03096	0.46	-0.8
3,246,326	-		CCNA_03096	0.46	+0.5
3,246,326	-		CCNA_03096	0.46	+0.5
3,246,335	+		CCNA_03096	0.46	+1.7
3,246,341	+		CCNA_03096	0.46	+0.6
3,246,341	+		CCNA_03096	0.46	+1.5
3,246,349	-		CCNA_03096	0.46	+0.5
3,246,373	+		CCNA_03096	0.47	-0.6
3,246,379	+		CCNA_03096	0.48	+0.1
3,246,385	-		CCNA_03096	0.48	+1.1
3,246,413	+		CCNA_03096	0.49	-1.1
3,246,465	-		CCNA_03096	0.51	+0.2
3,246,470	+		CCNA_03096	0.51	-0.9
3,246,489	-		CCNA_03096	0.52	-1.5
3,246,509	+		CCNA_03096	0.53	+1.3
3,246,525	+		CCNA_03096	0.54	-2.0
3,246,544	+		CCNA_03096	0.54	-1.0
3,246,664	+		CCNA_03096	0.59	-0.8
3,246,671	+		CCNA_03096	0.59	-1.3
3,246,671	+		CCNA_03096	0.59	-0.5
3,246,671	+		CCNA_03096	0.59	-0.2
3,246,671	+		CCNA_03096	0.59	-0.4
3,246,671	+		CCNA_03096	0.59	+2.3
3,246,671	+		CCNA_03096	0.59	-1.5
3,246,679	-		CCNA_03096	0.60	-0.8
3,246,679	-		CCNA_03096	0.60	-0.5
3,246,713	-		CCNA_03096	0.61	+0.4
3,246,734	-		CCNA_03096	0.62	-0.1
3,246,817	-		CCNA_03096	0.65	+0.2
3,246,827	-		CCNA_03096	0.66	-1.2
3,246,876	+		CCNA_03096	0.68	-1.0
3,246,882	+		CCNA_03096	0.68	+0.1
3,246,890	-		CCNA_03096	0.68	+0.3
3,246,957	+		CCNA_03096	0.71	-1.1
3,246,958	+		CCNA_03096	0.71	+1.2
3,246,963	+		CCNA_03096	0.71	-0.2
3,246,971	-		CCNA_03096	0.71	-1.0
3,246,978	+		CCNA_03096	0.72	+0.2
3,246,986	-		CCNA_03096	0.72	+2.0
3,247,009	+		CCNA_03096	0.73	+1.9
3,247,010	+		CCNA_03096	0.73	-0.9
3,247,011	-		CCNA_03096	0.73	+0.6
3,247,082	-		CCNA_03096	0.76	-1.2
3,247,106	-		CCNA_03096	0.77	+1.1
3,247,115	+		CCNA_03096	0.77	-0.2
3,247,118	+		CCNA_03096	0.77	-1.6
3,247,118	+		CCNA_03096	0.77	-1.7
3,247,118	+		CCNA_03096	0.77	+0.8
3,247,126	-		CCNA_03096	0.78	-0.1
3,247,126	-		CCNA_03096	0.78	-1.3
3,247,192	-		CCNA_03096	0.80	-0.9
3,247,196	+		CCNA_03096	0.80	+1.3
3,247,204	-		CCNA_03096	0.81	-0.3
3,247,254	+		CCNA_03096	0.83	-1.3
3,247,367	+		CCNA_03096	0.87	-1.0
3,247,390	-		CCNA_03096	0.88	+0.7
3,247,412	-		CCNA_03096	0.89	-1.0
3,247,487	+				+0.4
3,247,487	+				-0.1
3,247,490	-				+0.8
3,247,510	-				-1.7
3,247,517	+				-0.9
3,247,533	+				-1.4
3,247,538	+				-0.2
3,247,832	-				-0.2
3,247,874	+				+1.3
3,247,879	+				-0.4
3,247,896	-				+0.6
3,247,931	-				+1.1
3,247,934	+				-0.2
3,247,939	+				+0.8
3,247,947	-				+0.3
3,248,022	-				+0.4
3,248,080	+				-0.8
3,248,088	-				+0.7
3,248,088	-				-2.4
3,248,088	-				-0.7
3,248,088	-				+0.7
3,248,102	-				-0.7
3,248,130	+				-0.6
3,248,147	+				+0.7
3,248,160	+				+1.2
3,248,160	+				+0.1
3,248,160	+				+0.3
3,248,179	+				+2.3
3,248,179	+				-2.9
3,248,187	-				-0.0
3,248,187	-				-0.6
3,248,244	+				+1.0
3,248,303	+		CCNA_03097	0.10	+0.8
3,248,311	-		CCNA_03097	0.11	-0.5
3,248,330	-		CCNA_03097	0.13	+2.3
3,248,342	+		CCNA_03097	0.14	+0.0
3,248,372	+		CCNA_03097	0.17	+1.5
3,248,391	+		CCNA_03097	0.19	-0.9
3,248,391	-		CCNA_03097	0.19	+1.1
3,248,399	-		CCNA_03097	0.20	+0.9
3,248,410	+		CCNA_03097	0.21	-0.4
3,248,451	+		CCNA_03097	0.25	+0.5
3,248,459	-		CCNA_03097	0.26	+1.0
3,248,459	-		CCNA_03097	0.26	+0.2
3,248,460	+		CCNA_03097	0.26	-0.5
3,248,489	-		CCNA_03097	0.29	+0.2
3,248,498	+		CCNA_03097	0.30	+0.3
3,248,540	-		CCNA_03097	0.34	+1.2
3,248,560	-		CCNA_03097	0.36	-2.4
3,248,650	-		CCNA_03097	0.45	+1.0
3,248,683	+		CCNA_03097	0.48	-1.5