Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03061

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,212,023	-				-2.9
3,212,025	+				+0.2
3,212,051	+				+0.4
3,212,053	-				+0.2
3,212,059	-				-2.0
3,212,076	-		CCNA_03059	0.11	+0.1
3,212,091	+		CCNA_03059	0.14	+0.8
3,212,094	-		CCNA_03059	0.14	+0.4
3,212,094	-		CCNA_03059	0.14	-1.2
3,212,094	-		CCNA_03059	0.14	+1.6
3,212,105	+		CCNA_03059	0.16	-0.0
3,212,110	+		CCNA_03059	0.17	-0.4
3,212,115	+		CCNA_03059	0.18	+2.3
3,212,144	+		CCNA_03059	0.23	+0.6
3,212,197	+		CCNA_03059	0.33	-0.3
3,212,215	+		CCNA_03059	0.36	+0.8
3,212,266	-		CCNA_03059	0.45	-1.8
3,212,271	+		CCNA_03059	0.46	-0.1
3,212,297	-		CCNA_03059	0.51	+0.5
3,212,308	+		CCNA_03059	0.53	-0.2
3,212,308	+		CCNA_03059	0.53	+0.5
3,212,316	-		CCNA_03059	0.54	-0.0
3,212,328	+		CCNA_03059	0.56	-0.8
3,212,336	-		CCNA_03059	0.58	-0.5
3,212,342	-		CCNA_03059	0.59	-0.6
3,212,347	+		CCNA_03059	0.60	-0.0
3,212,358	+		CCNA_03059	0.62	-0.6
3,212,384	-		CCNA_03059	0.66	-0.2
3,212,385	-		CCNA_03059	0.66	-0.1
3,212,421	+		CCNA_03059	0.73	-1.2
3,212,462	-		CCNA_03059	0.80	+0.7
3,212,462	-		CCNA_03059	0.80	+0.7
3,212,462	-		CCNA_03059	0.80	-0.7
3,212,462	-		CCNA_03059	0.80	-1.0
3,212,474	-		CCNA_03059	0.82	+1.3
3,212,475	+		CCNA_03059	0.83	+1.7
3,212,479	-		CCNA_03059	0.83	+1.4
3,212,481	+		CCNA_03059	0.84	+1.0
3,212,494	+		CCNA_03059	0.86	-1.6
3,212,494	+		CCNA_03059	0.86	+0.6
3,212,524	-				+0.6
3,212,524	-				+1.9
3,212,530	-				+0.1
3,212,540	+				-1.4
3,212,573	+				-0.6
3,212,573	+				-1.4
3,212,573	+				-1.2
3,212,581	-				+0.4
3,212,581	-				+0.5
3,212,581	-				-0.8
3,212,581	-				+0.5
3,212,634	-				-0.2
3,212,636	+				+0.7
3,212,718	-				+1.5
3,212,740	+				+0.3
3,212,740	+				-0.5
3,212,740	+				+0.2
3,212,740	+				+0.2
3,212,748	-				+0.1
3,212,794	+		CCNA_03060	0.32	-0.2
3,212,822	-		CCNA_03060	0.47	+1.0
3,212,836	+		CCNA_03060	0.55	+0.5
3,212,889	+		CCNA_03060	0.84	+0.5
3,212,910	+				+1.2
3,212,911	+				+2.0
3,212,923	-				-0.2
3,212,955	+				-0.8
3,212,963	-				+1.7
3,212,966	+				+0.6
3,212,966	+				+1.0
3,212,966	+				+0.1
3,212,974	-				+0.1
3,212,974	-				+0.9
3,212,974	-				-0.7
3,212,975	+				+1.8
3,212,975	+				+1.2
3,212,982	-				-0.2
3,212,983	-				+4.3
3,212,983	-				+0.8
3,212,983	-				-2.0
3,212,984	-				-0.7
3,212,984	-				-0.5
3,213,090	+				-0.1
3,213,090	+				+0.8
3,213,095	+		CCNA_03061	0.10	-0.8
3,213,098	-		CCNA_03061	0.11	-2.4
3,213,098	-		CCNA_03061	0.11	+0.0
3,213,098	-		CCNA_03061	0.11	+0.8
3,213,098	-		CCNA_03061	0.11	+0.5
3,213,098	-		CCNA_03061	0.11	-0.5
3,213,098	-		CCNA_03061	0.11	-1.2
3,213,098	-		CCNA_03061	0.11	+1.6
3,213,103	-		CCNA_03061	0.11	-0.1
3,213,148	+		CCNA_03061	0.17	+1.4
3,213,161	+		CCNA_03061	0.18	+0.2
3,213,164	-		CCNA_03061	0.19	+0.2
3,213,167	-				+2.0
3,213,169	-		CCNA_03061	0.19	-0.6
3,213,171	+		CCNA_03061	0.20	-2.2
3,213,207	-		CCNA_03061	0.24	+1.0
3,213,211	+		CCNA_03061	0.25	+1.1
3,213,211	+		CCNA_03061	0.25	-0.1
3,213,281	+		CCNA_03061	0.33	-1.1
3,213,281	+		CCNA_03061	0.33	+0.0
3,213,291	+		CCNA_03061	0.34	+0.6
3,213,293	+		CCNA_03061	0.35	-0.0
3,213,299	-		CCNA_03061	0.35	+0.4
3,213,299	-		CCNA_03061	0.35	-1.3
3,213,327	+		CCNA_03061	0.39	-0.8
3,213,338	+				+3.3
3,213,338	+		CCNA_03061	0.40	+0.4
3,213,394	-		CCNA_03061	0.47	-0.9
3,213,413	-		CCNA_03061	0.49	-0.1
3,213,448	-		CCNA_03061	0.53	+0.6
3,213,465	-		CCNA_03061	0.55	+0.4
3,213,472	-		CCNA_03061	0.56	+1.8
3,213,472	-		CCNA_03061	0.56	+1.2
3,213,522	-				+2.3
3,213,523	+		CCNA_03061	0.63	-1.1
3,213,531	-		CCNA_03061	0.64	+1.3
3,213,587	-		CCNA_03061	0.70	+1.6
3,213,606	-		CCNA_03061	0.73	+0.8
3,213,615	+		CCNA_03061	0.74	+0.9
3,213,623	-		CCNA_03061	0.75	+0.1
3,213,623	-		CCNA_03061	0.75	-0.4
3,213,633	-		CCNA_03061	0.76	-0.2
3,213,633	-		CCNA_03061	0.76	+1.9
3,213,639	+		CCNA_03061	0.77	-0.5
3,213,650	+		CCNA_03061	0.78	-0.7
3,213,671	+		CCNA_03061	0.81	-0.8
3,213,679	-		CCNA_03061	0.82	+1.6
3,213,704	+		CCNA_03061	0.85	-2.1
3,213,719	+		CCNA_03061	0.86	-0.2
3,213,719	+		CCNA_03061	0.86	+0.0
3,213,726	+		CCNA_03061	0.87	-0.2
3,213,726	+		CCNA_03061	0.87	-0.4
3,213,726	+		CCNA_03061	0.87	+0.0
3,213,726	+		CCNA_03061	0.87	-1.1
3,213,726	+		CCNA_03061	0.87	+1.4
3,213,726	+		CCNA_03061	0.87	+2.1
3,213,734	-		CCNA_03061	0.88	+3.3
3,213,734	-		CCNA_03061	0.88	+1.7
3,213,734	-		CCNA_03061	0.88	+3.6
3,213,734	-		CCNA_03061	0.88	+0.2
3,213,734	-		CCNA_03061	0.88	+1.4
3,213,734	-		CCNA_03061	0.88	+4.3
3,213,734	-		CCNA_03061	0.88	+1.9
3,213,778	+				-0.5
3,213,801	-				+3.1
3,213,801	-				+2.8
3,213,826	-				+3.1
3,213,877	-				+2.7
3,213,916	+		CCNA_03062	0.11	+0.8
3,213,970	+		CCNA_03062	0.16	+0.1
3,213,973	-		CCNA_03062	0.16	+4.2
3,213,975	+		CCNA_03062	0.16	+1.3
3,213,978	-		CCNA_03062	0.16	+4.0
3,213,983	-		CCNA_03062	0.17	+3.8
3,214,040	-		CCNA_03062	0.22	+4.5
3,214,054	+		CCNA_03062	0.23	+3.7
3,214,131	-		CCNA_03062	0.30	+4.2
3,214,134	+		CCNA_03062	0.30	-1.3
3,214,136	+		CCNA_03062	0.31	+0.6
3,214,150	+		CCNA_03062	0.32	-0.5
3,214,150	+		CCNA_03062	0.32	-1.4
3,214,150	+		CCNA_03062	0.32	+0.0
3,214,150	+		CCNA_03062	0.32	+0.2
3,214,150	+		CCNA_03062	0.32	-0.3
3,214,158	-		CCNA_03062	0.33	+4.1
3,214,158	-		CCNA_03062	0.33	+5.0
3,214,158	-		CCNA_03062	0.33	+4.4
3,214,168	-		CCNA_03062	0.33	+4.3
3,214,168	-		CCNA_03062	0.33	+4.4
3,214,168	-		CCNA_03062	0.33	+4.0
3,214,168	-		CCNA_03062	0.33	+4.8
3,214,168	-		CCNA_03062	0.33	+3.5
3,214,205	+		CCNA_03062	0.37	-0.2
3,214,245	-		CCNA_03062	0.40	+4.4
3,214,276	+		CCNA_03062	0.43	+0.5
3,214,294	-		CCNA_03062	0.45	+4.2
3,214,309	+				+3.3
3,214,316	-		CCNA_03062	0.47	+4.5
3,214,319	+		CCNA_03062	0.47	+2.0
3,214,319	+		CCNA_03062	0.47	-0.8
3,214,327	-		CCNA_03062	0.48	+4.7
3,214,342	-		CCNA_03062	0.49	+4.2
3,214,372	+		CCNA_03062	0.52	-0.0
3,214,372	+		CCNA_03062	0.52	+0.4
3,214,387	+		CCNA_03062	0.53	+0.3
3,214,390	-		CCNA_03062	0.53	+4.5
3,214,451	-		CCNA_03062	0.59	+4.2
3,214,469	-		CCNA_03062	0.60	+3.6
3,214,473	+		CCNA_03062	0.61	+0.0
3,214,479	-		CCNA_03062	0.61	+4.4
3,214,521	-		CCNA_03062	0.65	+4.4
3,214,572	-		CCNA_03062	0.70	+4.3
3,214,587	+		CCNA_03062	0.71	+1.0
3,214,589	-		CCNA_03062	0.71	+4.1
3,214,646	-		CCNA_03062	0.76	+4.4
3,214,717	+		CCNA_03062	0.83	-0.7
3,214,725	-		CCNA_03062	0.83	+4.2
3,214,736	-		CCNA_03062	0.84	+3.7
3,214,788	-		CCNA_03062	0.89	+3.3
3,214,788	-		CCNA_03062	0.89	+3.9
3,214,788	-		CCNA_03062	0.89	+3.9
3,214,798	-				+2.7
3,214,805	+				-1.8
3,214,812	+				-1.7