Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03046

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,199,092	-		CCNA_03044	0.17	-0.3
3,199,122	-		CCNA_03044	0.24	+2.7
3,199,134	+		CCNA_03044	0.27	+0.8
3,199,147	+		CCNA_03044	0.30	+1.2
3,199,157	+		CCNA_03044	0.32	+0.7
3,199,166	+		CCNA_03044	0.34	+1.8
3,199,170	-		CCNA_03044	0.35	+0.1
3,199,170	-		CCNA_03044	0.35	+1.1
3,199,190	+		CCNA_03044	0.40	+0.8
3,199,190	+		CCNA_03044	0.40	+0.8
3,199,190	+		CCNA_03044	0.40	-1.6
3,199,198	-		CCNA_03044	0.41	-1.3
3,199,223	+		CCNA_03044	0.47	+0.6
3,199,228	+		CCNA_03044	0.48	+0.4
3,199,236	-		CCNA_03044	0.50	+4.1
3,199,254	+		CCNA_03044	0.54	+1.3
3,199,267	-		CCNA_03044	0.57	+1.1
3,199,363	+		CCNA_03044	0.80	+0.8
3,199,401	-		CCNA_03044	0.88	-0.3
3,199,404	+		CCNA_03044	0.89	+1.3
3,199,407	-				-0.2
3,199,409	+				+1.8
3,199,414	+				+1.0
3,199,414	+				+0.2
3,199,428	+				+0.7
3,199,429	-				+2.5
3,199,432	+				+1.5
3,199,433	+				+1.1
3,199,435	-				-0.3
3,199,441	-				+1.5
3,199,465	+				+0.6
3,199,465	+				-0.0
3,199,465	+				+1.4
3,199,486	+				+0.9
3,199,489	-				+1.9
3,199,494	-				-0.1
3,199,494	-				+0.4
3,199,524	+				+2.2
3,199,539	+				+0.4
3,199,564	-				+2.2
3,199,566	-				+1.6
3,199,581	-				+0.0
3,199,693	+		CCNA_03045	0.27	-0.0
3,199,767	+		CCNA_03045	0.41	+1.5
3,199,768	+		CCNA_03045	0.41	-1.3
3,199,768	+		CCNA_03045	0.41	+2.0
3,199,775	-		CCNA_03045	0.42	-0.9
3,199,776	-		CCNA_03045	0.42	-0.1
3,199,834	+		CCNA_03045	0.53	+0.9
3,199,859	+		CCNA_03045	0.57	+1.0
3,199,867	+		CCNA_03045	0.59	+2.9
3,199,880	-		CCNA_03045	0.61	+0.2
3,199,882	-				+2.3
3,199,899	+		CCNA_03045	0.64	-1.0
3,199,921	-		CCNA_03045	0.68	+1.5
3,199,923	+		CCNA_03045	0.69	-0.1
3,199,938	+		CCNA_03045	0.72	-1.1
3,199,981	+		CCNA_03045	0.79	+1.6
3,199,989	-		CCNA_03045	0.81	+1.9
3,199,989	-		CCNA_03045	0.81	-1.1
3,200,003	+		CCNA_03045	0.83	+0.1
3,200,003	+		CCNA_03045	0.83	+1.7
3,200,011	-		CCNA_03045	0.85	-0.9
3,200,015	+		CCNA_03045	0.86	+0.4
3,200,057	-				-0.4
3,200,072	+				+3.3
3,200,096	-				-1.3
3,200,162	+		CCNA_03046	0.13	+1.7
3,200,162	+		CCNA_03046	0.13	+0.4
3,200,193	+		CCNA_03046	0.18	+1.7
3,200,203	+		CCNA_03046	0.20	+1.2
3,200,220	-		CCNA_03046	0.23	+1.3
3,200,271	+		CCNA_03046	0.33	+0.5
3,200,279	-		CCNA_03046	0.34	+1.4
3,200,317	-		CCNA_03046	0.41	+0.3
3,200,342	-		CCNA_03046	0.45	-1.8
3,200,364	-		CCNA_03046	0.49	-1.7
3,200,383	+		CCNA_03046	0.53	+0.7
3,200,405	-		CCNA_03046	0.57	+0.4
3,200,406	+		CCNA_03046	0.57	+2.1
3,200,436	+		CCNA_03046	0.62	+1.2
3,200,451	+		CCNA_03046	0.65	-0.2
3,200,459	-		CCNA_03046	0.67	-0.8
3,200,465	+		CCNA_03046	0.68	+2.1
3,200,465	+		CCNA_03046	0.68	-0.5
3,200,465	+		CCNA_03046	0.68	+1.6
3,200,471	-		CCNA_03046	0.69	-0.6
3,200,531	+		CCNA_03046	0.80	+1.9
3,200,532	+		CCNA_03046	0.80	+1.3
3,200,532	+		CCNA_03046	0.80	+0.0
3,200,539	-		CCNA_03046	0.81	+0.4
3,200,539	-		CCNA_03046	0.81	+1.7
3,200,540	-		CCNA_03046	0.81	-0.5
3,200,540	-		CCNA_03046	0.81	+0.6
3,200,540	-		CCNA_03046	0.81	-0.8
3,200,540	-		CCNA_03046	0.81	-1.3
3,200,540	-		CCNA_03046	0.81	-0.4
3,200,569	+		CCNA_03046	0.87	+0.1
3,200,587	+				+0.1
3,200,587	+				+0.3
3,200,587	+				+0.4
3,200,587	+				-0.6
3,200,595	-				+1.1
3,200,595	-				+0.5
3,200,595	-				-0.6
3,200,595	-				-0.2
3,200,595	-				+2.6
3,200,619	+				+1.5
3,200,670	+				+0.1
3,200,678	-				+1.9
3,200,698	+				+0.4
3,200,733	+		CCNA_03047	0.12	+0.0
3,200,738	+		CCNA_03047	0.13	+0.2
3,200,762	+		CCNA_03047	0.16	-0.3
3,200,800	-		CCNA_03047	0.21	+1.1
3,200,834	+		CCNA_03047	0.26	-0.8
3,200,849	+		CCNA_03047	0.28	+0.1
3,200,857	-		CCNA_03047	0.29	+0.1
3,200,857	-		CCNA_03047	0.29	-0.9
3,200,867	-		CCNA_03047	0.30	-0.4
3,200,874	-		CCNA_03047	0.31	+0.7
3,200,883	+		CCNA_03047	0.32	-0.5
3,200,967	+		CCNA_03047	0.43	+0.7
3,200,976	-		CCNA_03047	0.45	+1.9
3,200,978	+		CCNA_03047	0.45	+0.4
3,200,978	+		CCNA_03047	0.45	-0.7
3,200,986	-		CCNA_03047	0.46	-0.2
3,200,986	-		CCNA_03047	0.46	-0.4
3,200,986	-		CCNA_03047	0.46	+1.5
3,200,986	-		CCNA_03047	0.46	+1.9
3,200,986	-		CCNA_03047	0.46	+0.0
3,200,986	-		CCNA_03047	0.46	-0.4
3,200,986	-		CCNA_03047	0.46	-1.5
3,201,015	-		CCNA_03047	0.50	-0.6
3,201,132	-		CCNA_03047	0.65	+3.9
3,201,166	+		CCNA_03047	0.70	+0.7
3,201,166	+		CCNA_03047	0.70	-0.9
3,201,167	+		CCNA_03047	0.70	+0.2
3,201,174	-		CCNA_03047	0.71	+0.3
3,201,220	-		CCNA_03047	0.77	-0.1
3,201,220	-		CCNA_03047	0.77	+0.3
3,201,248	+		CCNA_03047	0.81	-1.5
3,201,248	+		CCNA_03047	0.81	-1.7
3,201,248	+		CCNA_03047	0.81	+0.1
3,201,256	-		CCNA_03047	0.82	+0.2
3,201,256	-		CCNA_03047	0.82	+1.2
3,201,256	-		CCNA_03047	0.82	+0.4
3,201,271	-		CCNA_03047	0.84	+0.7
3,201,306	+		CCNA_03047	0.88	+0.2
3,201,306	+		CCNA_03047	0.88	+0.6
3,201,309	-		CCNA_03047	0.89	+1.9
3,201,314	-		CCNA_03047	0.89	+1.3
3,201,314	-		CCNA_03047	0.89	+1.1
3,201,327	+				-0.4
3,201,335	-				-1.1
3,201,335	-				-0.8
3,201,337	+				+0.1
3,201,337	+				+0.3
3,201,357	-				+1.7
3,201,378	-				-0.5
3,201,400	-				+1.8
3,201,409	+				-0.1
3,201,415	-				+1.5
3,201,417	-				-1.3
3,201,430	-				-0.6
3,201,430	-				-0.3
3,201,441	+				+0.6
3,201,442	-				+0.9
3,201,442	-				+1.2
3,201,514	+				-1.5
3,201,514	+				+1.1
3,201,514	+				+1.5
3,201,514	+				-0.1
3,201,514	+				-0.4
3,201,527	-				-0.4
3,201,538	+				+0.9
3,201,541	-				-0.7
3,201,551	-		CCNA_03048	0.10	+0.9
3,201,583	-		CCNA_03048	0.12	+1.1
3,201,583	-		CCNA_03048	0.12	+1.5
3,201,583	-		CCNA_03048	0.12	+0.2
3,201,583	-		CCNA_03048	0.12	+0.0
3,201,638	+		CCNA_03048	0.16	+1.5