Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03044

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,198,035	+		CCNA_03042	0.39	+2.5
3,198,042	+		CCNA_03042	0.40	+0.2
3,198,049	+		CCNA_03042	0.42	-0.2
3,198,049	+		CCNA_03042	0.42	+1.2
3,198,085	-		CCNA_03042	0.49	-0.5
3,198,094	+		CCNA_03042	0.50	+0.5
3,198,119	-		CCNA_03042	0.55	+1.3
3,198,137	+		CCNA_03042	0.59	+0.7
3,198,137	+		CCNA_03042	0.59	+1.0
3,198,138	-		CCNA_03042	0.59	+0.7
3,198,145	-		CCNA_03042	0.60	+1.0
3,198,145	-		CCNA_03042	0.60	+1.0
3,198,147	+		CCNA_03042	0.61	+1.3
3,198,151	-		CCNA_03042	0.61	+0.3
3,198,174	+		CCNA_03042	0.66	+2.0
3,198,182	-		CCNA_03042	0.67	+0.3
3,198,187	-		CCNA_03042	0.68	+2.1
3,198,198	+		CCNA_03042	0.71	+1.2
3,198,203	+		CCNA_03042	0.72	+0.1
3,198,203	+		CCNA_03042	0.72	+1.5
3,198,203	+		CCNA_03042	0.72	-0.4
3,198,211	-		CCNA_03042	0.73	+0.1
3,198,211	-		CCNA_03042	0.73	+1.5
3,198,211	-		CCNA_03042	0.73	-0.8
3,198,216	-		CCNA_03042	0.74	+1.1
3,198,230	+		CCNA_03042	0.77	+0.8
3,198,235	+		CCNA_03042	0.78	+0.1
3,198,248	-				+1.7
3,198,274	+		CCNA_03042	0.85	-1.4
3,198,296	+		CCNA_03042	0.90	-1.2
3,198,300	-				+0.9
3,198,309	-				+0.8
3,198,314	-				+1.3
3,198,331	+				+1.3
3,198,331	+				-0.4
3,198,331	+				-1.3
3,198,339	-				-1.6
3,198,367	-				+0.6
3,198,376	+				+0.3
3,198,389	-				+1.3
3,198,474	-				-0.5
3,198,478	+				-0.3
3,198,491	+				-0.3
3,198,521	+				+1.1
3,198,529	-				+5.2
3,198,587	-		CCNA_03043	0.36	+5.0
3,198,587	-				+3.7
3,198,591	+		CCNA_03043	0.38	+2.3
3,198,591	-		CCNA_03043	0.38	-0.1
3,198,635	-		CCNA_03043	0.62	+5.2
3,198,637	-		CCNA_03043	0.63	+5.6
3,198,647	-		CCNA_03043	0.69	+5.2
3,198,672	-		CCNA_03043	0.83	+5.1
3,198,705	-				+5.5
3,198,706	-				+5.2
3,198,713	+				+0.8
3,198,719	-				+5.3
3,198,725	-				+5.6
3,198,725	-				+5.5
3,198,750	-				+5.0
3,199,015	+				-1.6
3,199,015	+				+2.1
3,199,086	-		CCNA_03044	0.16	-0.3
3,199,086	-		CCNA_03044	0.16	+0.6
3,199,092	-		CCNA_03044	0.17	-0.3
3,199,122	-		CCNA_03044	0.24	+2.7
3,199,134	+		CCNA_03044	0.27	+0.8
3,199,147	+		CCNA_03044	0.30	+1.2
3,199,157	+		CCNA_03044	0.32	+0.7
3,199,166	+		CCNA_03044	0.34	+1.8
3,199,170	-		CCNA_03044	0.35	+0.1
3,199,170	-		CCNA_03044	0.35	+1.1
3,199,190	+		CCNA_03044	0.40	+0.8
3,199,190	+		CCNA_03044	0.40	+0.8
3,199,190	+		CCNA_03044	0.40	-1.6
3,199,198	-		CCNA_03044	0.41	-1.3
3,199,223	+		CCNA_03044	0.47	+0.6
3,199,228	+		CCNA_03044	0.48	+0.4
3,199,236	-		CCNA_03044	0.50	+4.1
3,199,254	+		CCNA_03044	0.54	+1.3
3,199,267	-		CCNA_03044	0.57	+1.1
3,199,363	+		CCNA_03044	0.80	+0.8
3,199,401	-		CCNA_03044	0.88	-0.3
3,199,404	+		CCNA_03044	0.89	+1.3
3,199,407	-				-0.2
3,199,409	+				+1.8
3,199,414	+				+1.0
3,199,414	+				+0.2
3,199,428	+				+0.7
3,199,429	-				+2.5
3,199,432	+				+1.5
3,199,433	+				+1.1
3,199,435	-				-0.3
3,199,441	-				+1.5
3,199,465	+				+0.6
3,199,465	+				-0.0
3,199,465	+				+1.4
3,199,486	+				+0.9
3,199,489	-				+1.9
3,199,494	-				-0.1
3,199,494	-				+0.4
3,199,524	+				+2.2
3,199,539	+				+0.4
3,199,564	-				+2.2
3,199,566	-				+1.6
3,199,581	-				+0.0
3,199,693	+		CCNA_03045	0.27	-0.0
3,199,767	+		CCNA_03045	0.41	+1.5
3,199,768	+		CCNA_03045	0.41	-1.3
3,199,768	+		CCNA_03045	0.41	+2.0
3,199,775	-		CCNA_03045	0.42	-0.9
3,199,776	-		CCNA_03045	0.42	-0.1
3,199,834	+		CCNA_03045	0.53	+0.9
3,199,859	+		CCNA_03045	0.57	+1.0
3,199,867	+		CCNA_03045	0.59	+2.9
3,199,880	-		CCNA_03045	0.61	+0.2
3,199,882	-				+2.3
3,199,899	+		CCNA_03045	0.64	-1.0
3,199,921	-		CCNA_03045	0.68	+1.5
3,199,923	+		CCNA_03045	0.69	-0.1
3,199,938	+		CCNA_03045	0.72	-1.1
3,199,981	+		CCNA_03045	0.79	+1.6
3,199,989	-		CCNA_03045	0.81	+1.9
3,199,989	-		CCNA_03045	0.81	-1.1
3,200,003	+		CCNA_03045	0.83	+0.1
3,200,003	+		CCNA_03045	0.83	+1.7
3,200,011	-		CCNA_03045	0.85	-0.9
3,200,015	+		CCNA_03045	0.86	+0.4
3,200,057	-				-0.4
3,200,072	+				+3.3
3,200,096	-				-1.3
3,200,162	+		CCNA_03046	0.13	+1.7
3,200,162	+		CCNA_03046	0.13	+0.4
3,200,193	+		CCNA_03046	0.18	+1.7
3,200,203	+		CCNA_03046	0.20	+1.2
3,200,220	-		CCNA_03046	0.23	+1.3
3,200,271	+		CCNA_03046	0.33	+0.5
3,200,279	-		CCNA_03046	0.34	+1.4
3,200,317	-		CCNA_03046	0.41	+0.3
3,200,342	-		CCNA_03046	0.45	-1.8
3,200,364	-		CCNA_03046	0.49	-1.7
3,200,383	+		CCNA_03046	0.53	+0.7
3,200,405	-		CCNA_03046	0.57	+0.4
3,200,406	+		CCNA_03046	0.57	+2.1
3,200,436	+		CCNA_03046	0.62	+1.2