Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03042

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,196,872	+		CCNA_03041	0.13	-0.3
3,196,881	-		CCNA_03041	0.14	+1.9
3,196,895	+		CCNA_03041	0.16	+1.1
3,196,895	+		CCNA_03041	0.16	+1.4
3,196,903	-		CCNA_03041	0.17	+1.7
3,196,906	+		CCNA_03041	0.17	+0.6
3,196,906	+		CCNA_03041	0.17	-0.6
3,196,906	+		CCNA_03041	0.17	+1.7
3,196,906	+		CCNA_03041	0.17	-0.9
3,196,914	-		CCNA_03041	0.18	+0.8
3,196,914	-		CCNA_03041	0.18	+2.2
3,196,914	-		CCNA_03041	0.18	+2.2
3,196,914	-		CCNA_03041	0.18	+1.7
3,196,914	-		CCNA_03041	0.18	+0.1
3,196,914	-		CCNA_03041	0.18	+1.8
3,196,923	+		CCNA_03041	0.19	+0.3
3,196,931	-		CCNA_03041	0.20	+2.6
3,196,985	+				+4.3
3,196,993	-		CCNA_03041	0.27	+1.6
3,196,993	-		CCNA_03041	0.27	+3.0
3,196,993	-		CCNA_03041	0.27	+1.7
3,197,003	-		CCNA_03041	0.28	+1.8
3,197,003	-		CCNA_03041	0.28	+3.2
3,197,043	+		CCNA_03041	0.32	-0.5
3,197,046	-		CCNA_03041	0.33	+0.3
3,197,047	-		CCNA_03041	0.33	+2.4
3,197,075	-		CCNA_03041	0.36	+1.8
3,197,123	-		CCNA_03041	0.41	+2.4
3,197,176	+		CCNA_03041	0.47	-0.1
3,197,184	-		CCNA_03041	0.48	+2.7
3,197,184	-		CCNA_03041	0.48	+3.0
3,197,219	+		CCNA_03041	0.52	-2.0
3,197,227	-		CCNA_03041	0.53	+2.1
3,197,241	+		CCNA_03041	0.55	+1.7
3,197,253	-		CCNA_03041	0.56	+2.2
3,197,258	-		CCNA_03041	0.56	+2.4
3,197,290	-		CCNA_03041	0.60	+1.3
3,197,290	-		CCNA_03041	0.60	+0.9
3,197,313	-		CCNA_03041	0.63	+1.6
3,197,348	+		CCNA_03041	0.67	-0.3
3,197,356	-				+3.3
3,197,370	+		CCNA_03041	0.69	+3.3
3,197,394	-		CCNA_03041	0.72	-0.5
3,197,464	-		CCNA_03041	0.80	+0.8
3,197,471	+		CCNA_03041	0.80	-0.8
3,197,480	+		CCNA_03041	0.81	+1.1
3,197,484	+		CCNA_03041	0.82	+1.8
3,197,488	-		CCNA_03041	0.82	+1.2
3,197,492	-		CCNA_03041	0.83	+1.4
3,197,499	-		CCNA_03041	0.83	+0.9
3,197,506	-		CCNA_03041	0.84	+1.5
3,197,540	-		CCNA_03041	0.88	+2.4
3,197,541	-		CCNA_03041	0.88	+1.9
3,197,571	-				+2.6
3,197,583	-				+3.2
3,197,583	-				+2.1
3,197,599	+				-1.5
3,197,612	-				+2.7
3,197,614	+				-0.4
3,197,622	-				+4.2
3,197,644	+				+1.0
3,197,659	+				+1.0
3,197,659	+				-0.9
3,197,659	+				+0.2
3,197,659	+				-0.8
3,197,659	+				-0.7
3,197,659	+				+1.0
3,197,659	+				-0.2
3,197,659	+				+0.1
3,197,659	+				+0.8
3,197,660	-				+1.7
3,197,660	-				+2.2
3,197,667	-				+1.0
3,197,667	-				+0.7
3,197,667	-				+0.9
3,197,667	-				+0.1
3,197,673	-				+0.9
3,197,731	+				+0.7
3,197,760	-				+2.9
3,197,760	-				+3.1
3,197,760	-				+3.2
3,197,818	-				+1.1
3,197,822	+				-0.5
3,197,822	+				+1.0
3,197,830	-				+1.1
3,197,830	-				+0.6
3,197,847	-				-0.2
3,197,847	-				-1.0
3,197,854	+				+0.0
3,197,862	-				-0.8
3,197,911	+		CCNA_03042	0.15	+1.4
3,197,911	+		CCNA_03042	0.15	+2.0
3,197,914	-		CCNA_03042	0.15	-0.8
3,197,914	-		CCNA_03042	0.15	+1.9
3,197,914	-		CCNA_03042	0.15	+2.5
3,197,919	-		CCNA_03042	0.16	+1.6
3,197,919	-		CCNA_03042	0.16	-0.4
3,197,946	+		CCNA_03042	0.21	-1.2
3,197,976	-		CCNA_03042	0.27	+2.1
3,197,981	-		CCNA_03042	0.28	+1.1
3,198,010	+		CCNA_03042	0.34	-0.8
3,198,010	+		CCNA_03042	0.34	-0.7
3,198,010	+		CCNA_03042	0.34	+0.7
3,198,010	+		CCNA_03042	0.34	-0.0
3,198,010	+		CCNA_03042	0.34	+1.3
3,198,010	+		CCNA_03042	0.34	+0.0
3,198,018	-		CCNA_03042	0.35	+1.3
3,198,018	-		CCNA_03042	0.35	+1.0
3,198,018	-		CCNA_03042	0.35	+2.6
3,198,018	-		CCNA_03042	0.35	+2.1
3,198,018	-		CCNA_03042	0.35	+2.2
3,198,018	-		CCNA_03042	0.35	+2.2
3,198,018	-		CCNA_03042	0.35	+1.0
3,198,035	+		CCNA_03042	0.39	+2.5
3,198,042	+		CCNA_03042	0.40	+0.2
3,198,049	+		CCNA_03042	0.42	-0.2
3,198,049	+		CCNA_03042	0.42	+1.2
3,198,085	-		CCNA_03042	0.49	-0.5
3,198,094	+		CCNA_03042	0.50	+0.5
3,198,119	-		CCNA_03042	0.55	+1.3
3,198,137	+		CCNA_03042	0.59	+0.7
3,198,137	+		CCNA_03042	0.59	+1.0
3,198,138	-		CCNA_03042	0.59	+0.7
3,198,145	-		CCNA_03042	0.60	+1.0
3,198,145	-		CCNA_03042	0.60	+1.0
3,198,147	+		CCNA_03042	0.61	+1.3
3,198,151	-		CCNA_03042	0.61	+0.3
3,198,174	+		CCNA_03042	0.66	+2.0
3,198,182	-		CCNA_03042	0.67	+0.3
3,198,187	-		CCNA_03042	0.68	+2.1
3,198,198	+		CCNA_03042	0.71	+1.2
3,198,203	+		CCNA_03042	0.72	+0.1
3,198,203	+		CCNA_03042	0.72	+1.5
3,198,203	+		CCNA_03042	0.72	-0.4
3,198,211	-		CCNA_03042	0.73	+0.1
3,198,211	-		CCNA_03042	0.73	+1.5
3,198,211	-		CCNA_03042	0.73	-0.8
3,198,216	-		CCNA_03042	0.74	+1.1
3,198,230	+		CCNA_03042	0.77	+0.8
3,198,235	+		CCNA_03042	0.78	+0.1
3,198,248	-				+1.7
3,198,274	+		CCNA_03042	0.85	-1.4
3,198,296	+		CCNA_03042	0.90	-1.2
3,198,300	-				+0.9
3,198,309	-				+0.8
3,198,314	-				+1.3
3,198,331	+				+1.3
3,198,331	+				-0.4
3,198,331	+				-1.3
3,198,339	-				-1.6
3,198,367	-				+0.6
3,198,376	+				+0.3
3,198,389	-				+1.3
3,198,474	-				-0.5
3,198,478	+				-0.3
3,198,491	+				-0.3
3,198,521	+				+1.1
3,198,529	-				+5.2
3,198,587	-		CCNA_03043	0.36	+5.0
3,198,587	-				+3.7
3,198,591	+		CCNA_03043	0.38	+2.3
3,198,591	-		CCNA_03043	0.38	-0.1
3,198,635	-		CCNA_03043	0.62	+5.2
3,198,637	-		CCNA_03043	0.63	+5.6
3,198,647	-		CCNA_03043	0.69	+5.2
3,198,672	-		CCNA_03043	0.83	+5.1
3,198,705	-				+5.5
3,198,706	-				+5.2
3,198,713	+				+0.8
3,198,719	-				+5.3
3,198,725	-				+5.6
3,198,725	-				+5.5
3,198,750	-				+5.0
3,199,015	+				-1.6
3,199,015	+				+2.1
3,199,086	-		CCNA_03044	0.16	-0.3
3,199,086	-		CCNA_03044	0.16	+0.6
3,199,092	-		CCNA_03044	0.17	-0.3
3,199,122	-		CCNA_03044	0.24	+2.7
3,199,134	+		CCNA_03044	0.27	+0.8
3,199,147	+		CCNA_03044	0.30	+1.2
3,199,157	+		CCNA_03044	0.32	+0.7
3,199,166	+		CCNA_03044	0.34	+1.8
3,199,170	-		CCNA_03044	0.35	+0.1
3,199,170	-		CCNA_03044	0.35	+1.1
3,199,190	+		CCNA_03044	0.40	+0.8
3,199,190	+		CCNA_03044	0.40	+0.8
3,199,190	+		CCNA_03044	0.40	-1.6
3,199,198	-		CCNA_03044	0.41	-1.3
3,199,223	+		CCNA_03044	0.47	+0.6
3,199,228	+		CCNA_03044	0.48	+0.4
3,199,236	-		CCNA_03044	0.50	+4.1
3,199,254	+		CCNA_03044	0.54	+1.3
3,199,267	-		CCNA_03044	0.57	+1.1