Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03039

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,193,414	-		CCNA_03038	0.37	+1.0
3,193,430	+		CCNA_03038	0.38	-0.5
3,193,434	-		CCNA_03038	0.39	+2.9
3,193,450	+		CCNA_03038	0.40	+1.0
3,193,466	+		CCNA_03038	0.41	+1.1
3,193,469	-		CCNA_03038	0.41	-0.6
3,193,494	+		CCNA_03038	0.42	+1.3
3,193,499	+		CCNA_03038	0.43	+1.8
3,193,502	-		CCNA_03038	0.43	+2.1
3,193,507	-		CCNA_03038	0.43	+1.8
3,193,548	-		CCNA_03038	0.46	+1.0
3,193,548	-		CCNA_03038	0.46	+1.4
3,193,548	-		CCNA_03038	0.46	+2.8
3,193,571	-		CCNA_03038	0.47	+1.4
3,193,582	+		CCNA_03038	0.48	+0.2
3,193,601	-		CCNA_03038	0.49	+4.0
3,193,632	+		CCNA_03038	0.51	+0.6
3,193,641	+		CCNA_03038	0.52	-1.6
3,193,668	-		CCNA_03038	0.54	+2.1
3,193,677	-		CCNA_03038	0.54	+2.7
3,193,678	+		CCNA_03038	0.54	-0.1
3,193,701	-		CCNA_03038	0.56	+0.2
3,193,724	+		CCNA_03038	0.57	+1.5
3,193,724	-		CCNA_03038	0.57	+2.3
3,193,749	+		CCNA_03038	0.59	-1.0
3,193,749	+		CCNA_03038	0.59	+0.0
3,193,769	+		CCNA_03038	0.60	-0.9
3,193,777	-		CCNA_03038	0.61	+2.2
3,193,788	+		CCNA_03038	0.61	+0.4
3,193,788	+		CCNA_03038	0.61	+1.1
3,193,811	+		CCNA_03038	0.63	-1.6
3,193,841	-		CCNA_03038	0.65	+1.8
3,193,846	+		CCNA_03038	0.65	+0.5
3,193,880	-		CCNA_03038	0.67	+2.2
3,193,892	-		CCNA_03038	0.68	+2.4
3,193,948	+				+2.0
3,193,965	-		CCNA_03038	0.73	+1.8
3,193,967	+		CCNA_03038	0.73	+0.8
3,194,028	+		CCNA_03038	0.77	-1.4
3,194,069	-		CCNA_03038	0.79	+2.3
3,194,069	-		CCNA_03038	0.79	+1.9
3,194,111	+		CCNA_03038	0.82	-0.6
3,194,119	-		CCNA_03038	0.83	+2.5
3,194,125	-		CCNA_03038	0.83	+0.9
3,194,168	-		CCNA_03038	0.86	+2.2
3,194,294	+				+0.7
3,194,326	+				-1.9
3,194,351	+				+3.5
3,194,354	-				+1.8
3,194,405	-				+1.7
3,194,412	+				-0.1
3,194,412	+				-1.6
3,194,420	-				+2.5
3,194,459	+		CCNA_03039	0.11	-0.1
3,194,470	+		CCNA_03039	0.12	+2.1
3,194,473	+		CCNA_03039	0.13	+0.6
3,194,494	+		CCNA_03039	0.16	+0.8
3,194,519	+		CCNA_03039	0.19	+0.0
3,194,525	-		CCNA_03039	0.20	+1.4
3,194,543	-				+5.9
3,194,543	-		CCNA_03039	0.23	+0.5
3,194,592	+		CCNA_03039	0.30	-0.1
3,194,592	+		CCNA_03039	0.30	+1.5
3,194,600	-		CCNA_03039	0.31	+2.8
3,194,683	-		CCNA_03039	0.44	+2.3
3,194,686	+		CCNA_03039	0.44	-0.2
3,194,728	+		CCNA_03039	0.50	+0.8
3,194,777	-		CCNA_03039	0.58	+1.5
3,194,786	+		CCNA_03039	0.59	-0.4
3,194,792	-		CCNA_03039	0.60	+2.6
3,194,792	-		CCNA_03039	0.60	+2.7
3,194,798	+		CCNA_03039	0.61	+1.7
3,194,804	-		CCNA_03039	0.62	+1.4
3,194,813	+		CCNA_03039	0.63	-0.2
3,194,845	-		CCNA_03039	0.68	+2.6
3,194,875	+		CCNA_03039	0.72	+0.6
3,194,883	-		CCNA_03039	0.73	+2.2
3,194,908	-		CCNA_03039	0.77	+2.0
3,194,922	+		CCNA_03039	0.79	-0.5
3,194,922	+		CCNA_03039	0.79	-1.2
3,194,922	+		CCNA_03039	0.79	-0.2
3,194,924	-		CCNA_03039	0.79	+2.8
3,194,930	-		CCNA_03039	0.80	+3.5
3,194,930	-		CCNA_03039	0.80	+2.4
3,194,955	-		CCNA_03039	0.84	+1.7
3,195,004	+				+0.2
3,195,010	-				+1.7
3,195,012	-				+0.9
3,195,032	-				+0.8
3,195,039	+				-1.7
3,195,049	-				+1.8
3,195,089	+				-0.6
3,195,097	-				+2.3
3,195,135	+				+1.1
3,195,143	-				+1.9
3,195,143	-				+2.3
3,195,143	-				+3.4
3,195,161	+				+0.3
3,195,166	+				+1.1
3,195,169	-				+2.5
3,195,230	+				+0.8
3,195,329	+		CCNA_03040	0.15	-1.0
3,195,373	+		CCNA_03040	0.18	+1.7
3,195,402	+		CCNA_03040	0.19	+0.3
3,195,402	+		CCNA_03040	0.19	-1.0
3,195,410	-		CCNA_03040	0.20	+1.7
3,195,412	+		CCNA_03040	0.20	+2.3
3,195,418	-		CCNA_03040	0.20	+1.7
3,195,420	-		CCNA_03040	0.21	+0.9
3,195,445	+		CCNA_03040	0.22	-0.3
3,195,464	-		CCNA_03040	0.23	+1.7
3,195,495	-		CCNA_03040	0.25	+1.3
3,195,502	+		CCNA_03040	0.25	+0.2
3,195,510	-		CCNA_03040	0.26	+3.6
3,195,515	-				+5.9
3,195,520	+		CCNA_03040	0.27	+1.0
3,195,531	+		CCNA_03040	0.27	+1.7
3,195,534	-		CCNA_03040	0.27	+1.5
3,195,581	+		CCNA_03040	0.30	+1.8
3,195,581	+		CCNA_03040	0.30	-0.8
3,195,581	+		CCNA_03040	0.30	-1.1
3,195,581	+		CCNA_03040	0.30	-1.2
3,195,581	+		CCNA_03040	0.30	-0.0
3,195,582	-		CCNA_03040	0.30	+0.7
3,195,589	-		CCNA_03040	0.31	+2.4
3,195,589	-		CCNA_03040	0.31	+3.0
3,195,594	-		CCNA_03040	0.31	+1.7
3,195,594	-		CCNA_03040	0.31	+2.1
3,195,600	+		CCNA_03040	0.31	+0.6
3,195,601	+		CCNA_03040	0.31	+0.1
3,195,686	+		CCNA_03040	0.36	-0.3
3,195,694	-		CCNA_03040	0.37	+2.0
3,195,694	-		CCNA_03040	0.37	+2.0
3,195,703	+		CCNA_03040	0.37	-0.7
3,195,719	+		CCNA_03040	0.38	+1.0
3,195,727	-		CCNA_03040	0.39	+2.4
3,195,728	-		CCNA_03040	0.39	+2.1
3,195,733	-		CCNA_03040	0.39	+1.9
3,195,733	-		CCNA_03040	0.39	+2.4
3,195,751	+		CCNA_03040	0.40	-0.2
3,195,751	+		CCNA_03040	0.40	-0.9
3,195,760	-		CCNA_03040	0.41	+2.4
3,195,770	+		CCNA_03040	0.41	+0.6
3,195,778	-		CCNA_03040	0.42	+2.6
3,195,778	-		CCNA_03040	0.42	+2.9
3,195,794	+		CCNA_03040	0.43	-0.2
3,195,794	+		CCNA_03040	0.43	+0.2
3,195,794	+		CCNA_03040	0.43	+2.3
3,195,794	+		CCNA_03040	0.43	+0.6
3,195,799	+		CCNA_03040	0.43	+1.5
3,195,802	-		CCNA_03040	0.43	+2.7
3,195,802	-		CCNA_03040	0.43	+2.2
3,195,802	-		CCNA_03040	0.43	+2.3
3,195,866	+		CCNA_03040	0.47	-0.3
3,195,869	-		CCNA_03040	0.47	+1.3
3,195,871	+		CCNA_03040	0.47	+1.5
3,195,874	-				+3.3
3,195,876	+		CCNA_03040	0.48	-0.3
3,195,876	+		CCNA_03040	0.48	-0.1
3,195,876	+		CCNA_03040	0.48	-0.0
3,195,884	-		CCNA_03040	0.48	+2.0
3,195,884	-		CCNA_03040	0.48	+2.4
3,195,885	-		CCNA_03040	0.48	+2.7
3,195,885	-		CCNA_03040	0.48	+1.3
3,195,909	-		CCNA_03040	0.50	+2.9
3,195,933	+		CCNA_03040	0.51	+0.5
3,195,944	-		CCNA_03040	0.52	+4.3
3,195,960	+		CCNA_03040	0.53	+0.2
3,195,968	-		CCNA_03040	0.53	+2.4
3,195,968	-		CCNA_03040	0.53	+1.6
3,195,976	+		CCNA_03040	0.54	-0.0
3,195,984	-		CCNA_03040	0.54	+1.7
3,195,986	+		CCNA_03040	0.54	-0.3
3,195,986	+		CCNA_03040	0.54	+0.7
3,196,029	+		CCNA_03040	0.57	-0.8
3,196,037	-		CCNA_03040	0.57	+1.0
3,196,052	+		CCNA_03040	0.58	+0.2
3,196,055	-		CCNA_03040	0.58	+2.7