Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03035

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,188,187	-		CCNA_03033	0.14	+1.0
3,188,206	+		CCNA_03033	0.16	+0.4
3,188,221	-		CCNA_03033	0.18	+0.3
3,188,221	-		CCNA_03033	0.18	-1.0
3,188,238	+		CCNA_03033	0.20	+2.2
3,188,246	-		CCNA_03033	0.21	-0.4
3,188,246	-		CCNA_03033	0.21	-0.3
3,188,247	+		CCNA_03033	0.21	+0.7
3,188,247	+		CCNA_03033	0.21	+2.2
3,188,310	+		CCNA_03033	0.29	+0.6
3,188,310	+		CCNA_03033	0.29	-1.0
3,188,320	+		CCNA_03033	0.30	+1.5
3,188,320	+		CCNA_03033	0.30	+1.1
3,188,323	-		CCNA_03033	0.30	+1.4
3,188,323	-		CCNA_03033	0.30	-0.7
3,188,327	+		CCNA_03033	0.31	+1.8
3,188,328	-		CCNA_03033	0.31	+0.2
3,188,328	-		CCNA_03033	0.31	-0.8
3,188,328	-		CCNA_03033	0.31	+0.6
3,188,400	+		CCNA_03033	0.40	+0.6
3,188,417	+		CCNA_03033	0.42	+3.7
3,188,425	-		CCNA_03033	0.43	-0.6
3,188,425	-		CCNA_03033	0.43	+0.0
3,188,459	-		CCNA_03033	0.47	-0.7
3,188,495	+		CCNA_03033	0.51	+2.9
3,188,503	-		CCNA_03033	0.52	-1.3
3,188,508	-		CCNA_03033	0.53	+0.8
3,188,510	+		CCNA_03033	0.53	+2.5
3,188,532	+		CCNA_03033	0.56	+1.8
3,188,532	+		CCNA_03033	0.56	-0.1
3,188,532	+		CCNA_03033	0.56	+2.1
3,188,540	-		CCNA_03033	0.57	+3.3
3,188,540	-		CCNA_03033	0.57	+0.2
3,188,565	+		CCNA_03033	0.60	+0.7
3,188,611	+		CCNA_03033	0.65	+1.0
3,188,613	+		CCNA_03033	0.66	+0.6
3,188,672	+		CCNA_03033	0.73	+1.3
3,188,693	-				+2.7
3,188,726	-		CCNA_03033	0.79	+0.1
3,188,744	+		CCNA_03033	0.81	+2.1
3,188,776	+		CCNA_03033	0.85	+0.7
3,188,870	-				+0.1
3,188,870	-				+1.7
3,188,891	+				+1.4
3,188,933	+		CCNA_03034	0.13	+0.3
3,188,950	-		CCNA_03034	0.22	+1.1
3,188,979	-		CCNA_03034	0.36	+2.0
3,188,988	+		CCNA_03034	0.41	+0.4
3,188,988	+		CCNA_03034	0.41	+0.8
3,188,990	-		CCNA_03034	0.42	-0.1
3,189,024	+		CCNA_03034	0.59	-1.2
3,189,028	+		CCNA_03034	0.62	+0.8
3,189,087	+				+1.2
3,189,100	+				-0.3
3,189,107	-				+0.8
3,189,130	+				-0.2
3,189,130	+				+1.4
3,189,130	+				-0.4
3,189,138	-				+1.0
3,189,140	+				-0.2
3,189,140	+				+2.3
3,189,141	+				+0.3
3,189,148	-				-0.6
3,189,148	-				-0.0
3,189,148	-				-1.9
3,189,175	+				+0.2
3,189,198	-				+0.3
3,189,198	-				+0.7
3,189,255	-				+0.2
3,189,264	-				+0.9
3,189,277	+				+1.3
3,189,277	+				-0.3
3,189,290	-		CCNA_03035	0.10	-1.0
3,189,303	-		CCNA_03035	0.11	+0.9
3,189,350	+		CCNA_03035	0.16	-1.9
3,189,363	-		CCNA_03035	0.17	+1.1
3,189,363	-		CCNA_03035	0.17	+1.4
3,189,380	+		CCNA_03035	0.19	-0.4
3,189,380	+		CCNA_03035	0.19	-0.4
3,189,388	-		CCNA_03035	0.19	+2.4
3,189,388	-		CCNA_03035	0.19	+1.6
3,189,388	-		CCNA_03035	0.19	+1.4
3,189,534	-		CCNA_03035	0.33	-0.8
3,189,597	+		CCNA_03035	0.38	-1.6
3,189,605	-		CCNA_03035	0.39	+0.4
3,189,658	-		CCNA_03035	0.44	+1.0
3,189,677	+		CCNA_03035	0.46	-0.0
3,189,677	+		CCNA_03035	0.46	+1.1
3,189,680	-		CCNA_03035	0.46	+2.1
3,189,682	+		CCNA_03035	0.46	+0.2
3,189,685	-		CCNA_03035	0.47	+3.3
3,189,685	-		CCNA_03035	0.47	+0.2
3,189,688	+		CCNA_03035	0.47	+1.0
3,189,714	-		CCNA_03035	0.49	+0.3
3,189,715	-		CCNA_03035	0.49	+2.9
3,189,732	+		CCNA_03035	0.51	-0.4
3,189,740	-		CCNA_03035	0.52	+2.1
3,189,740	-		CCNA_03035	0.52	+0.6
3,189,781	+		CCNA_03035	0.55	-0.3
3,189,787	+		CCNA_03035	0.56	-0.5
3,189,787	+		CCNA_03035	0.56	-0.4
3,189,789	-		CCNA_03035	0.56	+1.5
3,189,795	-		CCNA_03035	0.57	+1.0
3,189,815	-		CCNA_03035	0.58	+1.4
3,189,833	-		CCNA_03035	0.60	+1.1
3,189,833	-		CCNA_03035	0.60	+1.0
3,189,833	-		CCNA_03035	0.60	+0.7
3,189,866	+		CCNA_03035	0.63	+0.7
3,189,874	-		CCNA_03035	0.64	+0.0
3,189,874	-		CCNA_03035	0.64	+1.6
3,189,874	-		CCNA_03035	0.64	+1.0
3,189,875	-		CCNA_03035	0.64	+1.3
3,189,916	+		CCNA_03035	0.68	-0.9
3,189,933	-		CCNA_03035	0.69	+1.0
3,189,945	+		CCNA_03035	0.70	+0.1
3,190,008	-		CCNA_03035	0.76	+2.5
3,190,013	-		CCNA_03035	0.77	+4.9
3,190,043	+		CCNA_03035	0.79	-0.1
3,190,072	+		CCNA_03035	0.82	+0.4
3,190,085	-		CCNA_03035	0.83	-0.8
3,190,132	-		CCNA_03035	0.88	-0.5
3,190,146	-		CCNA_03035	0.89	-0.3
3,190,152	-		CCNA_03035	0.89	+1.1
3,190,166	-				+3.2
3,190,173	-				+1.2
3,190,223	+				-1.2
3,190,240	-				-0.9
3,190,240	-				+0.6
3,190,264	-				+0.5
3,190,287	-				-0.4
3,190,327	+				+0.2
3,190,345	-				+0.5
3,190,403	-				+1.4
3,190,405	+				-1.0
3,190,405	+				+1.6
3,190,405	+				-2.6
3,190,405	+				+0.3
3,190,410	+				-0.9
3,190,413	-				+0.3
3,190,418	+				+0.5
3,190,445	+		CCNA_03036	0.10	+0.5
3,190,474	+		CCNA_03036	0.13	+0.9
3,190,479	+		CCNA_03036	0.13	-0.7
3,190,492	-		CCNA_03036	0.15	+1.5
3,190,549	+		CCNA_03036	0.21	+0.4
3,190,557	-		CCNA_03036	0.21	+0.7
3,190,557	-		CCNA_03036	0.21	+0.5
3,190,592	-		CCNA_03036	0.25	+1.8
3,190,599	-		CCNA_03036	0.26	+2.5
3,190,602	+		CCNA_03036	0.26	+1.5
3,190,602	+		CCNA_03036	0.26	-1.0
3,190,660	+		CCNA_03036	0.32	-0.7
3,190,670	+		CCNA_03036	0.33	+1.1
3,190,687	+		CCNA_03036	0.35	+0.4
3,190,785	-		CCNA_03036	0.45	+0.3
3,190,785	-		CCNA_03036	0.45	+1.4
3,190,806	+		CCNA_03036	0.47	+1.5
3,190,806	+		CCNA_03036	0.47	+1.6
3,190,814	-		CCNA_03036	0.48	+0.3
3,190,814	-		CCNA_03036	0.48	+2.0
3,190,814	-		CCNA_03036	0.48	+0.4
3,190,886	-		CCNA_03036	0.55	+0.4
3,190,891	+		CCNA_03036	0.56	+1.0
3,190,905	+		CCNA_03036	0.57	+0.1
3,190,905	+		CCNA_03036	0.57	+0.1
3,190,905	+		CCNA_03036	0.57	+0.2
3,190,905	+		CCNA_03036	0.57	+0.6
3,190,905	+		CCNA_03036	0.57	-0.5
3,190,913	-		CCNA_03036	0.58	+1.3
3,190,963	-		CCNA_03036	0.63	+1.1
3,190,963	-		CCNA_03036	0.63	+1.1
3,191,026	+		CCNA_03036	0.69	+0.6
3,191,035	+		CCNA_03036	0.70	-0.9
3,191,043	-		CCNA_03036	0.71	-0.3
3,191,043	-		CCNA_03036	0.71	+1.2
3,191,070	-		CCNA_03036	0.74	-0.1
3,191,077	-		CCNA_03036	0.75	+1.6
3,191,090	-		CCNA_03036	0.76	-2.1
3,191,092	+		CCNA_03036	0.76	+1.9
3,191,092	+		CCNA_03036	0.76	-0.3
3,191,125	+		CCNA_03036	0.80	+3.3
3,191,125	+		CCNA_03036	0.80	+0.7
3,191,126	+		CCNA_03036	0.80	+0.6
3,191,133	-		CCNA_03036	0.80	+0.2
3,191,134	-		CCNA_03036	0.80	+1.0
3,191,184	-		CCNA_03036	0.86	+1.5
3,191,214	+		CCNA_03036	0.89	-1.2
3,191,222	-		CCNA_03036	0.89	+1.6