Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03023

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,175,925	-				+1.9
3,175,925	-				+0.6
3,175,925	-				-2.4
3,175,942	+				+3.7
3,175,964	+		CCNA_03022	0.12	+0.2
3,175,965	+		CCNA_03022	0.12	+0.1
3,175,965	+		CCNA_03022	0.12	-2.7
3,175,973	-		CCNA_03022	0.12	-0.7
3,175,976	+		CCNA_03022	0.13	+0.4
3,175,979	-		CCNA_03022	0.13	+1.7
3,176,028	+		CCNA_03022	0.17	+1.3
3,176,033	+		CCNA_03022	0.17	+0.1
3,176,033	+		CCNA_03022	0.17	+0.6
3,176,041	-		CCNA_03022	0.18	+2.1
3,176,041	-		CCNA_03022	0.18	+2.2
3,176,041	-		CCNA_03022	0.18	-0.2
3,176,043	+		CCNA_03022	0.18	+0.5
3,176,051	-		CCNA_03022	0.19	+1.3
3,176,051	-		CCNA_03022	0.19	+0.0
3,176,051	-		CCNA_03022	0.19	+1.9
3,176,071	+		CCNA_03022	0.21	+1.7
3,176,084	-		CCNA_03022	0.22	-1.6
3,176,091	+		CCNA_03022	0.22	-0.2
3,176,139	+		CCNA_03022	0.26	-0.9
3,176,143	+		CCNA_03022	0.27	+1.7
3,176,193	+		CCNA_03022	0.31	+0.2
3,176,196	-		CCNA_03022	0.31	+0.9
3,176,198	+		CCNA_03022	0.31	+0.8
3,176,201	-		CCNA_03022	0.32	-0.2
3,176,217	+		CCNA_03022	0.33	-1.3
3,176,217	+		CCNA_03022	0.33	-1.4
3,176,225	-		CCNA_03022	0.34	-0.9
3,176,225	-		CCNA_03022	0.34	+0.2
3,176,225	-		CCNA_03022	0.34	-0.8
3,176,237	+		CCNA_03022	0.35	-0.1
3,176,237	+		CCNA_03022	0.35	-1.3
3,176,320	-		CCNA_03022	0.42	+0.5
3,176,353	-		CCNA_03022	0.44	+3.1
3,176,353	-		CCNA_03022	0.44	+2.5
3,176,362	-		CCNA_03022	0.45	+0.8
3,176,385	+		CCNA_03022	0.47	-1.3
3,176,385	+		CCNA_03022	0.47	+1.4
3,176,393	-		CCNA_03022	0.48	+1.3
3,176,393	-		CCNA_03022	0.48	+4.0
3,176,393	-		CCNA_03022	0.48	+1.6
3,176,421	-		CCNA_03022	0.50	+0.9
3,176,427	+		CCNA_03022	0.51	-0.5
3,176,433	-		CCNA_03022	0.51	+1.1
3,176,450	+		CCNA_03022	0.53	-0.5
3,176,491	+		CCNA_03022	0.56	+0.1
3,176,503	+		CCNA_03022	0.57	-0.7
3,176,578	+		CCNA_03022	0.63	+1.4
3,176,583	+		CCNA_03022	0.64	+0.6
3,176,586	-		CCNA_03022	0.64	+1.9
3,176,605	-		CCNA_03022	0.66	+1.0
3,176,605	-		CCNA_03022	0.66	+1.7
3,176,638	+		CCNA_03022	0.68	-0.3
3,176,646	-		CCNA_03022	0.69	+1.1
3,176,676	+		CCNA_03022	0.72	+0.2
3,176,676	+		CCNA_03022	0.72	+0.6
3,176,682	+		CCNA_03022	0.72	-0.0
3,176,682	+		CCNA_03022	0.72	-0.5
3,176,682	+		CCNA_03022	0.72	+1.3
3,176,690	-		CCNA_03022	0.73	+0.0
3,176,718	+		CCNA_03022	0.75	-0.8
3,176,718	+		CCNA_03022	0.75	-0.1
3,176,726	-		CCNA_03022	0.76	+2.5
3,176,726	-		CCNA_03022	0.76	+2.4
3,176,729	+		CCNA_03022	0.76	-0.7
3,176,734	+		CCNA_03022	0.77	-0.2
3,176,741	+		CCNA_03022	0.77	-0.5
3,176,741	+		CCNA_03022	0.77	-0.1
3,176,741	+		CCNA_03022	0.77	-0.4
3,176,741	+				+3.3
3,176,749	-		CCNA_03022	0.78	+2.5
3,176,749	-		CCNA_03022	0.78	+1.9
3,176,749	-		CCNA_03022	0.78	+2.4
3,176,759	-		CCNA_03022	0.79	+2.2
3,176,759	-		CCNA_03022	0.79	+1.9
3,176,759	-		CCNA_03022	0.79	+2.1
3,176,767	+		CCNA_03022	0.79	+0.1
3,176,794	-		CCNA_03022	0.82	+1.7
3,176,854	+		CCNA_03022	0.87	+0.7
3,176,862	-		CCNA_03022	0.87	+1.8
3,176,864	+		CCNA_03022	0.88	+0.6
3,176,872	-		CCNA_03022	0.88	+2.6
3,176,964	+				-0.0
3,176,976	-				+2.8
3,176,976	-				+1.9
3,176,976	-				+1.3
3,176,981	-				+2.0
3,176,981	-				+2.4
3,177,063	-				+2.4
3,177,078	-				+1.0
3,177,094	+				+0.6
3,177,094	+				-0.7
3,177,102	-				+2.7
3,177,143	-		CCNA_03023	0.10	+3.6
3,177,153	-		CCNA_03023	0.11	+2.0
3,177,153	-		CCNA_03023	0.11	+1.3
3,177,155	+		CCNA_03023	0.11	+0.7
3,177,155	+		CCNA_03023	0.11	+0.5
3,177,155	+		CCNA_03023	0.11	-0.2
3,177,156	+		CCNA_03023	0.11	+4.3
3,177,163	-		CCNA_03023	0.11	+1.9
3,177,163	-		CCNA_03023	0.11	+1.9
3,177,186	+		CCNA_03023	0.12	+0.7
3,177,187	-		CCNA_03023	0.12	+2.9
3,177,188	-		CCNA_03023	0.12	+1.9
3,177,194	-		CCNA_03023	0.13	+1.5
3,177,215	-		CCNA_03023	0.14	+3.1
3,177,222	-		CCNA_03023	0.14	+2.6
3,177,240	+		CCNA_03023	0.15	+1.7
3,177,252	+		CCNA_03023	0.15	+0.1
3,177,260	-		CCNA_03023	0.16	+1.7
3,177,287	+		CCNA_03023	0.17	-1.1
3,177,290	-		CCNA_03023	0.17	+2.6
3,177,290	-		CCNA_03023	0.17	+2.3
3,177,290	-		CCNA_03023	0.17	+2.1
3,177,393	+		CCNA_03023	0.22	+0.2
3,177,393	+		CCNA_03023	0.22	-0.4
3,177,411	+		CCNA_03023	0.23	+2.1
3,177,438	+		CCNA_03023	0.24	-0.6
3,177,452	+		CCNA_03023	0.25	-0.6
3,177,469	-		CCNA_03023	0.25	+1.2
3,177,475	-		CCNA_03023	0.26	+0.8
3,177,482	-		CCNA_03023	0.26	+1.5
3,177,492	+		CCNA_03023	0.26	+0.5
3,177,507	+		CCNA_03023	0.27	-2.0
3,177,523	+		CCNA_03023	0.28	-0.2
3,177,552	+		CCNA_03023	0.29	+1.5
3,177,552	+		CCNA_03023	0.29	+0.2
3,177,552	+		CCNA_03023	0.29	+1.0
3,177,557	+		CCNA_03023	0.29	-0.2
3,177,560	-		CCNA_03023	0.30	+2.9
3,177,560	-		CCNA_03023	0.30	+1.5
3,177,592	-		CCNA_03023	0.31	+1.2
3,177,611	+		CCNA_03023	0.32	+0.2
3,177,624	+		CCNA_03023	0.32	+1.1
3,177,630	+		CCNA_03023	0.33	-1.4
3,177,630	+		CCNA_03023	0.33	+1.8
3,177,638	-		CCNA_03023	0.33	+2.4
3,177,640	-		CCNA_03023	0.33	+2.9
3,177,658	-		CCNA_03023	0.34	+2.0
3,177,716	+		CCNA_03023	0.37	-1.3
3,177,716	+		CCNA_03023	0.37	+3.3
3,177,724	-		CCNA_03023	0.37	+0.9
3,177,724	-		CCNA_03023	0.37	+1.7
3,177,724	-		CCNA_03023	0.37	+0.4
3,177,724	-		CCNA_03023	0.37	+1.8
3,177,724	-		CCNA_03023	0.37	+0.9
3,177,780	+		CCNA_03023	0.40	+0.3
3,177,780	+		CCNA_03023	0.40	+1.7
3,177,917	+		CCNA_03023	0.46	-0.0
3,177,926	+		CCNA_03023	0.46	-1.8
3,177,926	+		CCNA_03023	0.46	-0.6
3,177,927	+		CCNA_03023	0.46	+1.2
3,177,927	+		CCNA_03023	0.46	+1.5
3,177,936	+		CCNA_03023	0.47	-0.6
3,177,944	-		CCNA_03023	0.47	+2.6
3,177,963	+		CCNA_03023	0.48	+3.3
3,178,018	-		CCNA_03023	0.51	-0.3
3,178,080	+		CCNA_03023	0.54	-0.5
3,178,103	+		CCNA_03023	0.55	+1.2
3,178,111	-		CCNA_03023	0.55	+1.2
3,178,137	-		CCNA_03023	0.56	+1.5
3,178,159	-		CCNA_03023	0.57	+1.8
3,178,169	-		CCNA_03023	0.58	-0.2
3,178,169	-		CCNA_03023	0.58	+0.2
3,178,199	-		CCNA_03023	0.59	+2.0
3,178,213	-		CCNA_03023	0.60	+1.0
3,178,220	+		CCNA_03023	0.60	-0.2
3,178,220	+		CCNA_03023	0.60	-1.1
3,178,221	+		CCNA_03023	0.60	-1.0
3,178,221	+		CCNA_03023	0.60	+1.5
3,178,221	+		CCNA_03023	0.60	-0.6
3,178,221	+		CCNA_03023	0.60	+0.2
3,178,221	+		CCNA_03023	0.60	+0.7
3,178,221	+		CCNA_03023	0.60	-0.6
3,178,221	+		CCNA_03023	0.60	-0.6
3,178,221	+		CCNA_03023	0.60	-1.2
3,178,221	+		CCNA_03023	0.60	+0.7
3,178,221	+		CCNA_03023	0.60	-0.4
3,178,221	+		CCNA_03023	0.60	-1.2
3,178,221	+		CCNA_03023	0.60	+1.0
3,178,221	+		CCNA_03023	0.60	+1.5
3,178,221	+		CCNA_03023	0.60	+0.1
3,178,229	-		CCNA_03023	0.60	+1.1
3,178,229	-		CCNA_03023	0.60	+1.3
3,178,229	-		CCNA_03023	0.60	-1.0
3,178,229	-		CCNA_03023	0.60	+0.7
3,178,229	-		CCNA_03023	0.60	+1.7
3,178,234	-		CCNA_03023	0.61	+1.0
3,178,265	-		CCNA_03023	0.62	+1.0
3,178,292	-		CCNA_03023	0.63	+0.4
3,178,312	+		CCNA_03023	0.64	-0.0
3,178,320	-		CCNA_03023	0.65	+0.6
3,178,320	-		CCNA_03023	0.65	-1.1
3,178,322	+		CCNA_03023	0.65	+1.1
3,178,330	-		CCNA_03023	0.65	+0.2
3,178,340	-		CCNA_03023	0.66	+0.9
3,178,340	-		CCNA_03023	0.66	-0.1
3,178,368	-		CCNA_03023	0.67	+1.0
3,178,381	-		CCNA_03023	0.67	+2.4
3,178,429	+		CCNA_03023	0.70	+1.7
3,178,429	+		CCNA_03023	0.70	-1.5
3,178,429	+		CCNA_03023	0.70	+0.1
3,178,429	+		CCNA_03023	0.70	+0.5
3,178,429	+		CCNA_03023	0.70	+1.7
3,178,455	+		CCNA_03023	0.71	+0.9
3,178,455	+		CCNA_03023	0.71	-0.0
3,178,460	+		CCNA_03023	0.71	-0.5
3,178,460	+		CCNA_03023	0.71	-1.7
3,178,465	+		CCNA_03023	0.71	+0.8
3,178,465	+		CCNA_03023	0.71	+0.7
3,178,468	-		CCNA_03023	0.71	+0.8
3,178,473	-		CCNA_03023	0.72	+0.1
3,178,473	-		CCNA_03023	0.72	+2.3
3,178,494	+		CCNA_03023	0.73	+0.5
3,178,494	+		CCNA_03023	0.73	-1.2
3,178,502	-		CCNA_03023	0.73	+1.3
3,178,504	+		CCNA_03023	0.73	+1.5
3,178,504	+		CCNA_03023	0.73	-0.4
3,178,535	+		CCNA_03023	0.75	+2.0
3,178,535	+		CCNA_03023	0.75	+0.4
3,178,535	+		CCNA_03023	0.75	+2.6
3,178,543	-		CCNA_03023	0.75	+2.0
3,178,543	-		CCNA_03023	0.75	+1.5
3,178,543	-		CCNA_03023	0.75	+1.5
3,178,543	-		CCNA_03023	0.75	+2.4
3,178,543	-		CCNA_03023	0.75	+2.2
3,178,571	-		CCNA_03023	0.76	+3.2
3,178,578	-		CCNA_03023	0.77	+1.7
3,178,598	+		CCNA_03023	0.77	-0.6
3,178,603	+		CCNA_03023	0.78	-1.5
3,178,648	-		CCNA_03023	0.80	+1.7
3,178,649	-		CCNA_03023	0.80	+1.5
3,178,673	+		CCNA_03023	0.81	+1.1
3,178,676	-		CCNA_03023	0.81	+0.9
3,178,725	-		CCNA_03023	0.83	+0.5
3,178,763	-		CCNA_03023	0.85	+1.3
3,178,772	+		CCNA_03023	0.85	-0.9
3,178,780	-		CCNA_03023	0.86	+0.8
3,178,780	-		CCNA_03023	0.86	+1.3
3,178,799	+		CCNA_03023	0.87	-0.3
3,178,799	+		CCNA_03023	0.87	+1.3
3,178,807	-		CCNA_03023	0.87	+0.6
3,178,818	-		CCNA_03023	0.88	+2.0
3,178,841	+		CCNA_03023	0.89	+0.7
3,178,844	-		CCNA_03023	0.89	+1.7
3,178,849	-		CCNA_03023	0.89	-0.3
3,178,849	-		CCNA_03023	0.89	-1.9
3,178,854	-		CCNA_03023	0.89	+2.1
3,178,963	+				+0.5
3,179,020	+				+1.4
3,179,020	+				-0.0
3,179,030	+				+1.3
3,179,038	-				+0.7
3,179,038	-				+1.0
3,179,048	-				+1.3
3,179,055	+				+0.4
3,179,057	+				+1.1
3,179,058	-				+2.0
3,179,069	+				-0.5
3,179,070	-				-0.3
3,179,102	-				-0.7
3,179,171	-				-0.6
3,179,197	+				+3.7
3,179,224	+				-1.0
3,179,232	-				+2.0
3,179,254	+				+1.1
3,179,267	-				+2.0
3,179,277	+				+0.9
3,179,304	+				+0.8
3,179,352	-				+3.8
3,179,394	-				+2.9
3,179,394	-				+2.3
3,179,394	-				+2.4
3,179,446	-		CCNA_03024	0.16	+1.5
3,179,450	+		CCNA_03024	0.16	-0.1
3,179,455	+		CCNA_03024	0.17	+0.8
3,179,458	-		CCNA_03024	0.17	+3.1
3,179,503	+		CCNA_03024	0.22	+1.5
3,179,511	-		CCNA_03024	0.23	+2.7
3,179,511	-		CCNA_03024	0.23	+3.3
3,179,511	-		CCNA_03024	0.23	+2.2
3,179,517	-		CCNA_03024	0.24	+2.2
3,179,517	-		CCNA_03024	0.24	+1.1
3,179,517	-		CCNA_03024	0.24	+3.9
3,179,528	-		CCNA_03024	0.25	+3.2
3,179,545	-		CCNA_03024	0.27	+2.4
3,179,545	-		CCNA_03024	0.27	+2.5
3,179,571	-				+3.3
3,179,572	-		CCNA_03024	0.30	+2.4
3,179,678	-		CCNA_03024	0.42	+1.5
3,179,695	+		CCNA_03024	0.44	-0.0
3,179,695	+		CCNA_03024	0.44	-1.7
3,179,740	+		CCNA_03024	0.49	+1.5
3,179,748	-		CCNA_03024	0.49	+1.8
3,179,748	-		CCNA_03024	0.49	-0.7
3,179,748	-		CCNA_03024	0.49	+1.3
3,179,748	-		CCNA_03024	0.49	+1.7
3,179,748	-		CCNA_03024	0.49	+1.4
3,179,755	+		CCNA_03024	0.50	+0.3
3,179,780	-		CCNA_03024	0.53	+2.7
3,179,780	-		CCNA_03024	0.53	+1.6
3,179,780	-		CCNA_03024	0.53	+0.6
3,179,780	-		CCNA_03024	0.53	+0.4
3,179,780	-		CCNA_03024	0.53	+1.0
3,179,785	+		CCNA_03024	0.54	-0.2
3,179,785	+		CCNA_03024	0.54	+0.8
3,179,793	-		CCNA_03024	0.55	+2.3
3,179,793	-				+3.3
3,179,793	-		CCNA_03024	0.55	+0.6
3,179,793	-		CCNA_03024	0.55	+0.8
3,179,793	-		CCNA_03024	0.55	+0.4
3,179,793	-		CCNA_03024	0.55	+1.2
3,179,848	+		CCNA_03024	0.61	-0.2
3,179,848	+		CCNA_03024	0.61	+1.0
3,179,856	-		CCNA_03024	0.62	-1.1
3,179,856	-		CCNA_03024	0.62	+0.4
3,179,856	-		CCNA_03024	0.62	+0.5
3,179,856	-		CCNA_03024	0.62	-0.1
3,179,914	-		CCNA_03024	0.68	+1.9
3,179,918	+		CCNA_03024	0.69	+0.6
3,179,918	+		CCNA_03024	0.69	+1.0
3,179,936	-		CCNA_03024	0.71	+1.7
3,179,974	+		CCNA_03024	0.75	-0.6
3,179,974	+		CCNA_03024	0.75	-0.1
3,179,980	-		CCNA_03024	0.76	+2.3
3,179,982	-		CCNA_03024	0.76	-1.0
3,180,070	+		CCNA_03024	0.86	+1.1
3,180,078	-		CCNA_03024	0.87	+0.2
3,180,078	-				+2.0
3,180,078	-		CCNA_03024	0.87	+2.0
3,180,078	-		CCNA_03024	0.87	-0.2