Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02991

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,143,407	-				+0.6
3,143,451	-				+0.3
3,143,461	+				+0.9
3,143,461	+				-0.3
3,143,461	+				+0.3
3,143,469	-		CCNA_02989	0.10	+0.3
3,143,469	-		CCNA_02989	0.10	-0.5
3,143,469	-		CCNA_02989	0.10	+0.3
3,143,503	-		CCNA_02989	0.17	+1.6
3,143,519	+		CCNA_02989	0.20	-1.2
3,143,535	+		CCNA_02989	0.22	+1.0
3,143,552	-		CCNA_02989	0.26	+2.6
3,143,563	-		CCNA_02989	0.28	-0.6
3,143,570	+		CCNA_02989	0.29	+3.0
3,143,570	+		CCNA_02989	0.29	+3.1
3,143,578	-		CCNA_02989	0.30	-2.1
3,143,609	-		CCNA_02989	0.36	-0.1
3,143,631	-		CCNA_02989	0.40	+0.6
3,143,635	+		CCNA_02989	0.41	+1.8
3,143,645	+		CCNA_02989	0.43	+1.2
3,143,645	+		CCNA_02989	0.43	+1.0
3,143,653	-		CCNA_02989	0.44	+1.2
3,143,662	+		CCNA_02989	0.46	+0.6
3,143,663	+		CCNA_02989	0.46	+0.6
3,143,663	-		CCNA_02989	0.46	+0.5
3,143,671	-		CCNA_02989	0.48	-0.9
3,143,688	-		CCNA_02989	0.51	-0.7
3,143,698	+		CCNA_02989	0.52	+1.5
3,143,740	-		CCNA_02989	0.60	+2.8
3,143,740	-		CCNA_02989	0.60	-1.4
3,143,740	-		CCNA_02989	0.60	-0.5
3,143,760	+		CCNA_02989	0.64	-0.7
3,143,760	+		CCNA_02989	0.64	-0.7
3,143,760	+		CCNA_02989	0.64	-1.0
3,143,760	+		CCNA_02989	0.64	-0.9
3,143,760	+		CCNA_02989	0.64	+0.8
3,143,760	+		CCNA_02989	0.64	-1.0
3,143,760	+		CCNA_02989	0.64	-2.3
3,143,760	+		CCNA_02989	0.64	-0.2
3,143,760	+		CCNA_02989	0.64	+0.4
3,143,760	+		CCNA_02989	0.64	-0.9
3,143,760	+		CCNA_02989	0.64	-0.3
3,143,760	+		CCNA_02989	0.64	-1.3
3,143,760	+		CCNA_02989	0.64	+1.2
3,143,760	+		CCNA_02989	0.64	-0.8
3,143,760	+		CCNA_02989	0.64	-1.2
3,143,768	-		CCNA_02989	0.65	-0.5
3,143,768	-		CCNA_02989	0.65	+0.6
3,143,768	-		CCNA_02989	0.65	-0.5
3,143,768	-		CCNA_02989	0.65	-0.4
3,143,768	-		CCNA_02989	0.65	+0.3
3,143,768	-		CCNA_02989	0.65	-2.5
3,143,768	-		CCNA_02989	0.65	+1.7
3,143,768	-		CCNA_02989	0.65	-0.1
3,143,768	-		CCNA_02989	0.65	-0.4
3,143,768	-		CCNA_02989	0.65	-0.9
3,143,768	-		CCNA_02989	0.65	-0.3
3,143,768	-		CCNA_02989	0.65	-0.1
3,143,768	-		CCNA_02989	0.65	-1.7
3,143,768	-		CCNA_02989	0.65	+0.4
3,143,768	-		CCNA_02989	0.65	+2.0
3,143,768	-		CCNA_02989	0.65	+0.4
3,143,768	-		CCNA_02989	0.65	+1.2
3,143,768	-		CCNA_02989	0.65	-0.4
3,143,806	+		CCNA_02989	0.72	+1.0
3,143,808	+		CCNA_02989	0.73	-0.7
3,143,829	+		CCNA_02989	0.77	-0.4
3,143,831	-		CCNA_02989	0.77	+0.9
3,143,838	-		CCNA_02989	0.78	-0.7
3,143,854	-		CCNA_02989	0.81	+0.7
3,143,855	-		CCNA_02989	0.81	+1.5
3,143,857	-		CCNA_02989	0.82	-0.5
3,143,894	+		CCNA_02989	0.89	+0.1
3,143,899	+		CCNA_02989	0.90	+2.0
3,143,899	+		CCNA_02989	0.90	-1.4
3,143,918	+				+2.8
3,143,918	+				-0.3
3,143,924	-				+0.7
3,143,951	-				+0.3
3,143,957	-				-1.7
3,143,980	+				+0.6
3,143,987	-				-0.4
3,144,046	+				-0.4
3,144,046	+				+0.0
3,144,046	+				-1.1
3,144,046	+				+2.8
3,144,054	-				-1.2
3,144,054	-				+0.6
3,144,054	-				-0.7
3,144,054	-				+2.8
3,144,054	-				+0.8
3,144,054	-				-1.3
3,144,113	-				-1.0
3,144,888	+				+0.4
3,144,917	+				-1.0
3,144,927	+				-0.6
3,144,950	-				+0.2
3,145,014	-		CCNA_02992	0.21	-0.4
3,145,018	-		CCNA_02992	0.21	+0.2
3,145,028	+		CCNA_02992	0.24	+0.3
3,145,088	-		CCNA_02992	0.36	+2.0
3,145,138	-		CCNA_02992	0.47	+0.1
3,145,270	+		CCNA_02992	0.75	-0.5
3,145,270	+		CCNA_02992	0.75	+1.2
3,145,278	-		CCNA_02992	0.77	+1.3
3,145,278	-		CCNA_02992	0.77	-0.8
3,145,278	-		CCNA_02992	0.77	-1.0
3,145,322	-		CCNA_02992	0.86	+0.8
3,145,382	-				+1.3
3,145,395	+				+1.8
3,145,395	+				-1.2
3,145,395	+				+0.4
3,145,395	+				+0.3
3,145,403	-				+0.2
3,145,403	-				-1.2
3,145,403	-				-0.1
3,145,408	-				+0.4
3,145,450	-				-0.2
3,145,450	-				+1.8
3,145,484	-				+1.6
3,145,489	-				-1.4
3,145,519	+		CCNA_02993	0.10	+0.4
3,145,542	-		CCNA_02993	0.12	+0.2
3,145,575	+		CCNA_02993	0.15	+1.0
3,145,639	-		CCNA_02993	0.19	+1.6
3,145,726	+		CCNA_02993	0.26	+2.3
3,145,726	+		CCNA_02993	0.26	+1.6
3,145,726	+		CCNA_02993	0.26	+1.5
3,145,734	-		CCNA_02993	0.27	+1.1
3,145,781	-		CCNA_02993	0.30	+0.8
3,145,783	+		CCNA_02993	0.31	+0.1
3,145,793	+		CCNA_02993	0.31	-0.4
3,145,827	-		CCNA_02993	0.34	+0.9