Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02935

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,093,961	+				+3.8
3,093,984	-				+1.3
3,094,015	-				+0.4
3,094,028	+				+4.5
3,094,043	-				-0.3
3,094,047	-				+0.4
3,094,121	+				+4.2
3,094,193	-				+1.2
3,094,326	+		CCNA_02934	0.28	-0.1
3,094,326	+		CCNA_02934	0.28	+1.0
3,094,403	+		CCNA_02934	0.39	+0.5
3,094,403	+		CCNA_02934	0.39	-0.5
3,094,410	+		CCNA_02934	0.40	+0.8
3,094,415	+		CCNA_02934	0.41	+0.1
3,094,415	+		CCNA_02934	0.41	-0.5
3,094,465	+		CCNA_02934	0.48	+0.9
3,094,513	-		CCNA_02934	0.55	+0.7
3,094,515	+		CCNA_02934	0.55	-0.8
3,094,515	+		CCNA_02934	0.55	+0.5
3,094,515	+		CCNA_02934	0.55	+0.9
3,094,523	-		CCNA_02934	0.56	+2.5
3,094,542	-		CCNA_02934	0.59	+1.7
3,094,547	+		CCNA_02934	0.60	-0.7
3,094,555	-		CCNA_02934	0.61	+2.9
3,094,555	-		CCNA_02934	0.61	+0.7
3,094,559	+		CCNA_02934	0.62	+0.2
3,094,573	+		CCNA_02934	0.64	+2.5
3,094,651	+		CCNA_02934	0.75	+1.0
3,094,739	+		CCNA_02934	0.87	+1.3
3,094,739	+		CCNA_02934	0.87	+1.0
3,094,739	+		CCNA_02934	0.87	+0.4
3,094,771	+				+2.2
3,094,776	+				+0.5
3,094,791	+				+3.2
3,094,801	-				+0.3
3,094,817	+				+1.9
3,094,830	-				+0.0
3,094,850	-				-0.2
3,094,857	+				+0.8
3,094,865	-				-0.5
3,094,871	+				-0.2
3,094,879	-				+1.0
3,094,926	+				+0.1
3,094,989	+				+1.0
3,094,998	+				+2.2
3,095,010	+				+1.0
3,095,046	-				+0.5
3,095,050	-				+2.4
3,095,061	+				-0.0
3,095,118	-				+1.4
3,095,118	-				+0.0
3,095,146	-				+0.6
3,095,187	-		CCNA_02935	0.10	+1.1
3,095,187	-		CCNA_02935	0.10	+1.1
3,095,216	-		CCNA_02935	0.12	+2.2
3,095,218	-		CCNA_02935	0.12	+0.4
3,095,262	+		CCNA_02935	0.14	-0.1
3,095,276	+		CCNA_02935	0.14	+0.9
3,095,284	-		CCNA_02935	0.15	+0.7
3,095,296	-		CCNA_02935	0.15	+2.2
3,095,315	-		CCNA_02935	0.16	-0.5
3,095,315	-		CCNA_02935	0.16	+0.4
3,095,333	-		CCNA_02935	0.17	+0.5
3,095,354	+		CCNA_02935	0.18	+0.5
3,095,390	-		CCNA_02935	0.20	+1.9
3,095,390	-		CCNA_02935	0.20	+1.1
3,095,404	-		CCNA_02935	0.20	+2.5
3,095,413	-		CCNA_02935	0.21	+1.2
3,095,417	+		CCNA_02935	0.21	-1.0
3,095,448	-		CCNA_02935	0.22	+1.3
3,095,472	+		CCNA_02935	0.23	+0.5
3,095,480	-		CCNA_02935	0.24	+0.4
3,095,489	+		CCNA_02935	0.24	-0.1
3,095,489	+		CCNA_02935	0.24	-1.1
3,095,497	-		CCNA_02935	0.24	+1.1
3,095,517	-		CCNA_02935	0.25	-1.8
3,095,519	+		CCNA_02935	0.25	-0.2
3,095,527	-		CCNA_02935	0.26	+1.3
3,095,527	-		CCNA_02935	0.26	+1.2
3,095,537	-		CCNA_02935	0.26	+0.3
3,095,629	+		CCNA_02935	0.30	+0.6
3,095,653	+		CCNA_02935	0.31	-1.1
3,095,721	+		CCNA_02935	0.34	-0.1
3,095,732	-		CCNA_02935	0.35	-0.7
3,095,746	+		CCNA_02935	0.36	+1.9
3,095,776	-		CCNA_02935	0.37	+1.1
3,095,859	+		CCNA_02935	0.41	-0.3
3,095,902	+		CCNA_02935	0.43	+1.1
3,095,910	-		CCNA_02935	0.43	+1.2
3,095,911	-		CCNA_02935	0.43	+1.6
3,095,911	-		CCNA_02935	0.43	+1.2
3,095,949	+		CCNA_02935	0.45	-0.8
3,095,962	-		CCNA_02935	0.45	+1.2
3,095,967	+		CCNA_02935	0.46	+0.5
3,095,971	+		CCNA_02935	0.46	+1.0
3,095,971	+		CCNA_02935	0.46	-1.1
3,095,979	-		CCNA_02935	0.46	+1.8
3,095,984	+		CCNA_02935	0.46	-0.2
3,096,029	+		CCNA_02935	0.48	-1.9
3,096,029	+		CCNA_02935	0.48	-0.6
3,096,096	+		CCNA_02935	0.51	-0.5
3,096,096	+		CCNA_02935	0.51	-0.2
3,096,122	+		CCNA_02935	0.53	-0.7
3,096,122	+		CCNA_02935	0.53	-0.2
3,096,135	+		CCNA_02935	0.53	+0.3
3,096,197	+		CCNA_02935	0.56	+1.9
3,096,202	+		CCNA_02935	0.56	-1.3
3,096,210	-		CCNA_02935	0.57	+2.8
3,096,232	-		CCNA_02935	0.58	+1.4
3,096,245	+		CCNA_02935	0.58	+0.6
3,096,254	-		CCNA_02935	0.59	+1.8
3,096,263	+		CCNA_02935	0.59	-1.3
3,096,271	-		CCNA_02935	0.59	+2.2
3,096,306	-		CCNA_02935	0.61	+1.1
3,096,325	-		CCNA_02935	0.62	+1.3
3,096,356	+		CCNA_02935	0.63	-1.3
3,096,393	+		CCNA_02935	0.65	+0.9
3,096,393	+		CCNA_02935	0.65	-1.7
3,096,396	-		CCNA_02935	0.65	+1.9
3,096,399	+		CCNA_02935	0.65	+0.8
3,096,401	-		CCNA_02935	0.65	+0.9
3,096,401	-		CCNA_02935	0.65	-0.5
3,096,401	-		CCNA_02935	0.65	+0.4
3,096,429	+		CCNA_02935	0.66	+0.5
3,096,481	+		CCNA_02935	0.69	+1.7
3,096,518	+		CCNA_02935	0.70	+0.1
3,096,518	+		CCNA_02935	0.70	-0.3
3,096,536	-		CCNA_02935	0.71	-0.7
3,096,659	+		CCNA_02935	0.77	+2.5
3,096,716	+		CCNA_02935	0.79	+2.2
3,096,722	+		CCNA_02935	0.80	+0.9
3,096,722	+		CCNA_02935	0.80	-0.3
3,096,730	-		CCNA_02935	0.80	-0.9
3,096,739	+		CCNA_02935	0.80	-0.7
3,096,739	+		CCNA_02935	0.80	+1.5
3,096,739	+		CCNA_02935	0.80	+1.3
3,096,747	-		CCNA_02935	0.81	+0.3
3,096,747	-		CCNA_02935	0.81	-0.5
3,096,780	-		CCNA_02935	0.82	+1.8
3,096,809	+		CCNA_02935	0.84	-0.4
3,096,850	-		CCNA_02935	0.85	+1.2
3,096,873	+		CCNA_02935	0.86	+2.2
3,096,873	+		CCNA_02935	0.86	+0.7
3,096,873	+		CCNA_02935	0.86	+2.1
3,096,873	+		CCNA_02935	0.86	-0.5
3,096,873	+		CCNA_02935	0.86	-0.6
3,096,873	+		CCNA_02935	0.86	+1.2
3,096,881	-		CCNA_02935	0.87	-0.2
3,096,881	-		CCNA_02935	0.87	-1.6
3,096,881	-		CCNA_02935	0.87	+0.9
3,096,881	-		CCNA_02935	0.87	-0.7
3,096,881	-		CCNA_02935	0.87	-0.2
3,096,883	+		CCNA_02935	0.87	+2.3
3,096,886	-		CCNA_02935	0.87	-0.5
3,096,916	+		CCNA_02935	0.88	+0.8
3,096,916	+		CCNA_02935	0.88	+0.8
3,096,916	+		CCNA_02935	0.88	-0.5
3,096,916	+		CCNA_02935	0.88	+3.9
3,096,916	+		CCNA_02935	0.88	+0.6
3,096,916	+		CCNA_02935	0.88	-0.7
3,096,924	-		CCNA_02935	0.89	+1.1
3,096,924	-		CCNA_02935	0.89	+1.0
3,096,927	+		CCNA_02935	0.89	-0.7
3,096,935	-		CCNA_02935	0.89	+1.0
3,096,942	+		CCNA_02935	0.90	-0.4
3,096,950	-				+2.2
3,096,950	-				+0.0
3,096,955	-				+1.0
3,097,037	+				+0.2
3,097,037	+				+0.3
3,097,037	+				+0.6
3,097,045	-				+0.7
3,097,045	-				-0.1
3,097,045	-				+0.2
3,097,047	+				-1.2
3,097,047	+				+0.9
3,097,055	-				+0.2
3,097,091	-				+0.9
3,097,091	-				+0.8
3,097,093	-				+1.5
3,097,139	+				+0.1
3,097,173	+				+0.6
3,097,183	+				+1.5
3,097,183	+				-0.1
3,097,183	+				+0.9
3,097,190	+				+1.5
3,097,221	+				+1.7
3,097,238	+				-0.2
3,097,238	+				+0.4
3,097,248	-				+0.1
3,097,253	+				-0.1
3,097,253	+				-0.9
3,097,261	-				+0.9
3,097,261	-				+0.5
3,097,300	-				-0.3
3,097,319	+				+1.5
3,097,335	+				-0.9
3,097,341	+				-0.3
3,097,343	-		CCNA_02936	0.10	+0.1
3,097,349	-		CCNA_02936	0.11	+0.3
3,097,424	+		CCNA_02936	0.22	-0.6
3,097,453	+		CCNA_02936	0.27	-1.3
3,097,490	+		CCNA_02936	0.32	-0.8
3,097,502	+		CCNA_02936	0.34	+1.2
3,097,550	+		CCNA_02936	0.41	+1.0
3,097,568	+		CCNA_02936	0.44	-0.3
3,097,608	+		CCNA_02936	0.50	+3.0
3,097,634	-		CCNA_02936	0.54	+0.0
3,097,652	-		CCNA_02936	0.57	+0.2
3,097,661	+		CCNA_02936	0.58	-1.4
3,097,699	-		CCNA_02936	0.64	-1.6
3,097,717	-		CCNA_02936	0.67	-0.4
3,097,723	-		CCNA_02936	0.68	-0.0
3,097,773	+		CCNA_02936	0.75	-0.1
3,097,773	+		CCNA_02936	0.75	-1.6
3,097,781	-		CCNA_02936	0.76	+2.2
3,097,781	-		CCNA_02936	0.76	+1.5
3,097,853	+		CCNA_02936	0.87	-0.0
3,097,853	+		CCNA_02936	0.87	+0.1
3,097,853	+		CCNA_02936	0.87	-0.3
3,097,861	-		CCNA_02936	0.88	-0.4
3,097,875	+				-0.2
3,097,888	+				-1.0
3,097,920	+				-0.1
3,097,933	+				+1.7
3,097,943	+				+0.6
3,097,960	+				+1.3
3,097,960	+				+1.5
3,097,977	+				-0.7
3,097,977	+				+0.9
3,097,977	+				+0.5
3,097,977	+				-1.9
3,097,982	+				+0.5
3,097,985	-				-1.7
3,097,985	-				-0.5
3,098,100	-				+1.2