Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02913

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,069,743	+				-0.3
3,069,743	+				+0.1
3,069,751	-				-0.2
3,069,775	+				-0.0
3,069,810	+				+0.2
3,069,810	+				+1.3
3,069,818	-				-1.5
3,069,818	-				-0.2
3,069,888	+				-0.3
3,069,940	+				-0.7
3,069,966	+				-1.4
3,070,009	-		CCNA_02912	0.11	+1.7
3,070,059	+		CCNA_02912	0.18	-0.9
3,070,059	+		CCNA_02912	0.18	-0.8
3,070,072	+		CCNA_02912	0.20	+0.9
3,070,074	-		CCNA_02912	0.20	+1.9
3,070,079	-		CCNA_02912	0.21	+0.5
3,070,121	+		CCNA_02912	0.27	-0.2
3,070,121	+		CCNA_02912	0.27	+0.8
3,070,121	+		CCNA_02912	0.27	+0.9
3,070,121	+		CCNA_02912	0.27	-1.4
3,070,131	+		CCNA_02912	0.28	-0.3
3,070,150	+		CCNA_02912	0.31	+1.0
3,070,150	+		CCNA_02912	0.31	+2.4
3,070,158	-		CCNA_02912	0.32	+0.7
3,070,158	-		CCNA_02912	0.32	+0.4
3,070,158	-		CCNA_02912	0.32	+0.4
3,070,168	+		CCNA_02912	0.33	+0.1
3,070,177	+		CCNA_02912	0.34	+1.9
3,070,185	-		CCNA_02912	0.36	-0.8
3,070,218	+		CCNA_02912	0.40	-0.1
3,070,218	+		CCNA_02912	0.40	-1.1
3,070,218	-		CCNA_02912	0.40	+0.3
3,070,221	-		CCNA_02912	0.40	-0.2
3,070,259	+		CCNA_02912	0.46	+0.5
3,070,265	-		CCNA_02912	0.46	+1.1
3,070,267	-		CCNA_02912	0.47	-0.7
3,070,267	-		CCNA_02912	0.47	+0.2
3,070,315	+		CCNA_02912	0.53	+1.1
3,070,320	+		CCNA_02912	0.54	+1.2
3,070,346	-		CCNA_02912	0.58	+1.5
3,070,353	+		CCNA_02912	0.58	+0.6
3,070,353	+		CCNA_02912	0.58	+2.1
3,070,361	-		CCNA_02912	0.60	+1.5
3,070,361	-		CCNA_02912	0.60	-0.1
3,070,361	-		CCNA_02912	0.60	+0.5
3,070,368	+		CCNA_02912	0.61	+1.1
3,070,385	+		CCNA_02912	0.63	-0.0
3,070,385	+		CCNA_02912	0.63	+0.4
3,070,400	+		CCNA_02912	0.65	-0.2
3,070,432	+		CCNA_02912	0.69	+0.0
3,070,432	+		CCNA_02912	0.69	+0.2
3,070,439	+		CCNA_02912	0.70	+0.8
3,070,445	+		CCNA_02912	0.71	-0.4
3,070,453	-		CCNA_02912	0.72	+0.1
3,070,455	+		CCNA_02912	0.72	-0.8
3,070,498	+		CCNA_02912	0.78	+1.9
3,070,511	-		CCNA_02912	0.80	-0.3
3,070,528	-		CCNA_02912	0.82	+0.9
3,070,535	+		CCNA_02912	0.83	-0.2
3,070,539	-		CCNA_02912	0.84	-1.2
3,070,545	+		CCNA_02912	0.85	+0.7
3,070,548	-		CCNA_02912	0.85	+0.3
3,070,551	+		CCNA_02912	0.86	-0.0
3,070,551	+		CCNA_02912	0.86	-0.1
3,070,558	-		CCNA_02912	0.86	-0.9
3,070,559	-		CCNA_02912	0.87	+0.1
3,070,585	+				+1.1
3,070,592	+				-0.2
3,070,610	-				+1.5
3,070,622	-				-0.7
3,070,622	-				+0.1
3,070,622	-				+0.6
3,070,633	-				+0.3
3,070,663	+				-0.5
3,070,671	-				+0.1
3,070,671	-				-1.6
3,070,684	+				+1.1
3,070,697	-				+0.4
3,070,700	+				-0.6
3,070,723	-				+2.2
3,070,739	+		CCNA_02913	0.15	+1.4
3,070,739	+		CCNA_02913	0.15	+1.2
3,070,739	+		CCNA_02913	0.15	-1.0
3,070,739	+		CCNA_02913	0.15	+0.4
3,070,739	+		CCNA_02913	0.15	-0.7
3,070,747	-		CCNA_02913	0.16	+1.7
3,070,748	-		CCNA_02913	0.16	-0.8
3,070,748	-		CCNA_02913	0.16	+1.3
3,070,756	+		CCNA_02913	0.18	-0.1
3,070,756	+		CCNA_02913	0.18	+0.8
3,070,764	-		CCNA_02913	0.19	+3.1
3,070,775	+		CCNA_02913	0.21	+1.2
3,070,789	-		CCNA_02913	0.24	+1.9
3,070,799	+		CCNA_02913	0.26	-0.5
3,070,812	+		CCNA_02913	0.28	-0.6
3,070,817	+		CCNA_02913	0.29	+1.4
3,070,830	-		CCNA_02913	0.31	+0.9
3,070,834	-		CCNA_02913	0.32	+0.2
3,070,834	-		CCNA_02913	0.32	-0.1
3,070,847	+		CCNA_02913	0.34	+0.9
3,070,847	+		CCNA_02913	0.34	+1.5
3,070,847	+		CCNA_02913	0.34	-1.8
3,070,854	+		CCNA_02913	0.35	+1.1
3,070,854	+		CCNA_02913	0.35	+1.6
3,070,871	+		CCNA_02913	0.39	+1.4
3,070,872	+		CCNA_02913	0.39	-1.0
3,070,879	-		CCNA_02913	0.40	-0.9
3,070,903	-		CCNA_02913	0.44	+1.5
3,070,924	+		CCNA_02913	0.48	+1.0
3,070,924	+		CCNA_02913	0.48	+1.4
3,070,932	-		CCNA_02913	0.49	+1.1
3,070,976	+		CCNA_02913	0.57	+1.4
3,070,978	-		CCNA_02913	0.58	+0.9
3,070,984	+		CCNA_02913	0.59	-1.3
3,070,984	+		CCNA_02913	0.59	-1.0
3,070,984	-		CCNA_02913	0.59	-0.7
3,070,992	-		CCNA_02913	0.60	+4.9
3,070,992	-		CCNA_02913	0.60	+4.7
3,071,005	-		CCNA_02913	0.63	+1.1
3,071,005	-		CCNA_02913	0.63	-1.1
3,071,006	+		CCNA_02913	0.63	+1.4
3,071,015	-		CCNA_02913	0.64	-0.4
3,071,033	+		CCNA_02913	0.68	+2.9
3,071,078	+		CCNA_02913	0.76	+1.7
3,071,113	+		CCNA_02913	0.82	+0.5
3,071,150	+		CCNA_02913	0.89	+1.7
3,071,212	-				+0.8
3,071,230	+				+1.3
3,071,238	-				+0.8
3,071,261	-				-0.2
3,071,286	+				+3.9
3,071,293	+				+0.5
3,071,294	-				-0.0
3,071,310	+				-0.1
3,071,318	-				+0.2
3,071,327	+				-0.5
3,071,343	+				-0.1
3,071,373	+				+0.4
3,071,381	-				-1.4
3,071,495	+				+1.3
3,071,578	+				+2.5
3,071,599	+				+1.1
3,071,599	+				+0.7
3,071,599	+				+1.3
3,071,649	+				+0.9
3,071,690	+				+0.6
3,071,702	+				+1.9
3,071,703	+				+1.5
3,071,711	-				+0.4
3,071,716	-				+1.1
3,071,716	-				-1.2
3,071,721	-				-0.2
3,071,734	+				+1.5
3,071,734	+				-0.8
3,071,742	-				+0.3
3,071,764	-				+3.9
3,071,778	-				-1.0
3,071,780	+				-0.8
3,071,788	-				+1.2
3,071,788	-				-0.3
3,071,788	-				-0.2
3,071,788	-				-0.8
3,071,791	+				+0.3
3,071,791	+				+0.6
3,071,822	-		CCNA_02914	0.11	+0.2
3,071,822	-		CCNA_02914	0.11	+1.2
3,071,833	-		CCNA_02914	0.12	+0.6
3,071,847	+		CCNA_02914	0.13	+1.5
3,071,855	-		CCNA_02914	0.13	+2.3
3,071,855	-		CCNA_02914	0.13	-0.7
3,071,861	+		CCNA_02914	0.13	-1.3
3,071,872	+		CCNA_02914	0.14	+0.2
3,071,872	+		CCNA_02914	0.14	+0.2
3,071,872	+		CCNA_02914	0.14	-0.8
3,071,872	+		CCNA_02914	0.14	-0.7
3,071,879	+		CCNA_02914	0.15	-0.3
3,071,896	+		CCNA_02914	0.16	-2.0
3,071,896	+		CCNA_02914	0.16	+0.8
3,071,902	+		CCNA_02914	0.16	+0.9
3,071,904	-		CCNA_02914	0.16	-0.4
3,071,904	-		CCNA_02914	0.16	-0.4
3,071,912	-		CCNA_02914	0.17	+0.9
3,071,940	+		CCNA_02914	0.18	+0.0
3,071,941	-		CCNA_02914	0.18	+1.3
3,071,977	+		CCNA_02914	0.21	-1.7
3,071,999	-		CCNA_02914	0.22	+0.7
3,072,002	+		CCNA_02914	0.22	-0.1
3,072,004	-		CCNA_02914	0.22	+0.6
3,072,013	+		CCNA_02914	0.23	-0.6
3,072,036	+		CCNA_02914	0.24	-0.1
3,072,055	+		CCNA_02914	0.25	-0.4
3,072,062	+		CCNA_02914	0.26	+0.5
3,072,070	-		CCNA_02914	0.26	-0.8
3,072,073	+		CCNA_02914	0.26	-1.3
3,072,082	+		CCNA_02914	0.27	-0.4
3,072,105	+		CCNA_02914	0.28	+0.7
3,072,113	-		CCNA_02914	0.29	-0.7
3,072,154	-		CCNA_02914	0.31	-0.9
3,072,161	+		CCNA_02914	0.32	+0.7
3,072,161	+		CCNA_02914	0.32	+1.3
3,072,161	+		CCNA_02914	0.32	+1.5
3,072,161	+		CCNA_02914	0.32	+0.7
3,072,161	+		CCNA_02914	0.32	-1.0
3,072,169	-		CCNA_02914	0.32	+1.3
3,072,169	-		CCNA_02914	0.32	+1.5
3,072,169	-		CCNA_02914	0.32	+0.1
3,072,197	-		CCNA_02914	0.34	+0.9
3,072,199	+		CCNA_02914	0.34	-1.0