Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02910

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,065,402	-		CCNA_02909	0.40	+1.0
3,065,525	+		CCNA_02909	0.49	+1.5
3,065,567	+		CCNA_02909	0.51	-0.1
3,065,597	-		CCNA_02909	0.53	-0.4
3,065,600	+		CCNA_02909	0.54	-0.2
3,065,600	+		CCNA_02909	0.54	+0.5
3,065,608	-		CCNA_02909	0.54	+2.1
3,065,639	+		CCNA_02909	0.56	-0.1
3,065,647	-		CCNA_02909	0.57	+0.9
3,065,647	-		CCNA_02909	0.57	+0.1
3,065,657	+		CCNA_02909	0.57	+1.2
3,065,670	+		CCNA_02909	0.58	-0.0
3,065,670	+		CCNA_02909	0.58	+1.2
3,065,678	-		CCNA_02909	0.59	+0.6
3,065,708	-		CCNA_02909	0.61	+1.3
3,065,727	-		CCNA_02909	0.62	-0.2
3,065,736	+		CCNA_02909	0.63	-0.3
3,065,746	+		CCNA_02909	0.63	+0.6
3,065,746	+		CCNA_02909	0.63	-1.4
3,065,746	+		CCNA_02909	0.63	+0.2
3,065,824	-		CCNA_02909	0.69	-0.6
3,065,894	-		CCNA_02909	0.73	+3.4
3,065,907	+		CCNA_02909	0.74	+0.4
3,065,920	+		CCNA_02909	0.75	+0.1
3,065,954	-		CCNA_02909	0.77	-1.1
3,065,990	+		CCNA_02909	0.80	+0.4
3,066,013	-		CCNA_02909	0.81	+0.8
3,066,028	-		CCNA_02909	0.82	-0.9
3,066,078	-		CCNA_02909	0.86	+2.0
3,066,078	-		CCNA_02909	0.86	-0.2
3,066,123	+		CCNA_02909	0.89	+1.3
3,066,134	+		CCNA_02909	0.89	+1.0
3,066,166	-				+0.6
3,066,184	-				+0.9
3,066,184	-				+2.1
3,066,184	-				+1.8
3,066,196	+				+0.9
3,066,206	+				+0.5
3,066,209	-				+1.9
3,066,224	-				+1.5
3,066,237	-				+1.6
3,066,250	-				+1.3
3,066,290	-				+0.8
3,066,300	+				+1.2
3,066,310	-				+2.8
3,066,377	+				+1.2
3,066,422	+				-1.4
3,066,430	-				+5.5
3,066,461	+				+1.1
3,066,581	-				+5.1
3,066,600	+				-0.8
3,066,608	-				+5.2
3,066,608	-				+5.2
3,066,648	+				+1.9
3,066,656	-				+5.0
3,066,711	-		CCNA_02910	0.11	+4.7
3,066,775	-		CCNA_02910	0.13	+5.1
3,066,887	-		CCNA_02910	0.17	+4.6
3,066,906	-		CCNA_02910	0.17	+4.1
3,066,977	+		CCNA_02910	0.20	+0.0
3,067,007	-		CCNA_02910	0.21	+4.8
3,067,019	-		CCNA_02910	0.21	+4.4
3,067,019	-		CCNA_02910	0.21	+4.8
3,067,019	-		CCNA_02910	0.21	+4.5
3,067,087	+		CCNA_02910	0.24	-0.8
3,067,095	-		CCNA_02910	0.24	+3.8
3,067,095	-		CCNA_02910	0.24	+4.3
3,067,139	+		CCNA_02910	0.25	-0.4
3,067,148	-		CCNA_02910	0.26	+4.6
3,067,156	+		CCNA_02910	0.26	-0.3
3,067,157	+		CCNA_02910	0.26	+1.9
3,067,157	+		CCNA_02910	0.26	+0.5
3,067,157	+		CCNA_02910	0.26	-1.0
3,067,157	+		CCNA_02910	0.26	+1.7
3,067,164	-		CCNA_02910	0.26	+4.0
3,067,165	-		CCNA_02910	0.26	+4.4
3,067,172	-		CCNA_02910	0.27	+4.5
3,067,182	-		CCNA_02910	0.27	+4.6
3,067,182	-		CCNA_02910	0.27	+4.4
3,067,194	-		CCNA_02910	0.27	+5.0
3,067,207	+		CCNA_02910	0.28	-0.6
3,067,209	+		CCNA_02910	0.28	-0.6
3,067,216	-		CCNA_02910	0.28	+4.7
3,067,216	-		CCNA_02910	0.28	+4.7
3,067,222	+		CCNA_02910	0.28	+1.8
3,067,227	+		CCNA_02910	0.28	+0.0
3,067,264	+		CCNA_02910	0.30	-1.9
3,067,269	+		CCNA_02910	0.30	+1.9
3,067,351	-		CCNA_02910	0.33	+4.7
3,067,416	-		CCNA_02910	0.35	+4.5
3,067,419	+		CCNA_02910	0.35	+1.9
3,067,422	-		CCNA_02910	0.35	+4.1
3,067,422	-		CCNA_02910	0.35	+4.5
3,067,426	-		CCNA_02910	0.35	+4.9
3,067,426	-		CCNA_02910	0.35	+4.5
3,067,451	+		CCNA_02910	0.36	-0.3
3,067,451	+		CCNA_02910	0.36	-1.2
3,067,461	+		CCNA_02910	0.36	+0.6
3,067,461	+		CCNA_02910	0.36	+1.1
3,067,461	+		CCNA_02910	0.36	+0.1
3,067,461	+		CCNA_02910	0.36	-0.4
3,067,461	+		CCNA_02910	0.36	-1.4
3,067,461	+		CCNA_02910	0.36	+0.6
3,067,461	+		CCNA_02910	0.36	+1.9
3,067,461	+		CCNA_02910	0.36	-0.1
3,067,461	+		CCNA_02910	0.36	+0.6
3,067,461	+		CCNA_02910	0.36	-0.1
3,067,461	+		CCNA_02910	0.36	+0.3
3,067,461	+		CCNA_02910	0.36	+1.3
3,067,469	-		CCNA_02910	0.37	+4.1
3,067,469	-		CCNA_02910	0.37	+4.6
3,067,469	-		CCNA_02910	0.37	+4.3
3,067,469	-		CCNA_02910	0.37	+3.9
3,067,469	-		CCNA_02910	0.37	+4.7
3,067,469	-		CCNA_02910	0.37	+4.4
3,067,469	-		CCNA_02910	0.37	+4.5
3,067,469	-		CCNA_02910	0.37	+4.5
3,067,469	-		CCNA_02910	0.37	+4.2
3,067,469	-		CCNA_02910	0.37	+4.8
3,067,469	-		CCNA_02910	0.37	+4.2
3,067,469	-		CCNA_02910	0.37	+5.3
3,067,471	+		CCNA_02910	0.37	-0.5
3,067,476	+		CCNA_02910	0.37	-0.2
3,067,476	+		CCNA_02910	0.37	+0.1
3,067,483	-		CCNA_02910	0.37	+4.9
3,067,484	-		CCNA_02910	0.37	+4.5
3,067,484	-		CCNA_02910	0.37	+4.4
3,067,501	+		CCNA_02910	0.38	+1.1
3,067,515	+		CCNA_02910	0.38	-0.1
3,067,523	-		CCNA_02910	0.38	+4.0
3,067,541	-		CCNA_02910	0.39	+4.9
3,067,541	-		CCNA_02910	0.39	+4.3
3,067,563	-		CCNA_02910	0.40	+5.0
3,067,567	-		CCNA_02910	0.40	+4.5
3,067,584	-		CCNA_02910	0.41	+4.4
3,067,636	+		CCNA_02910	0.42	-1.9
3,067,636	+		CCNA_02910	0.42	+1.5
3,067,642	+		CCNA_02910	0.43	+1.9
3,067,644	-		CCNA_02910	0.43	+4.5
3,067,644	-		CCNA_02910	0.43	+4.3
3,067,644	-		CCNA_02910	0.43	+4.1
3,067,644	-		CCNA_02910	0.43	+4.3
3,067,655	+		CCNA_02910	0.43	-1.5
3,067,702	+		CCNA_02910	0.45	-0.8
3,067,760	+		CCNA_02910	0.47	-0.0
3,067,852	+		CCNA_02910	0.50	+0.6
3,067,975	-		CCNA_02910	0.54	+4.6
3,067,983	-		CCNA_02910	0.54	+3.5
3,067,992	-		CCNA_02910	0.54	+4.3
3,068,014	-		CCNA_02910	0.55	+4.1
3,068,066	+		CCNA_02910	0.57	+0.3
3,068,087	-		CCNA_02910	0.58	+4.8
3,068,120	-		CCNA_02910	0.59	+4.0
3,068,122	+		CCNA_02910	0.59	+1.3
3,068,136	+		CCNA_02910	0.59	-0.7
3,068,146	-		CCNA_02910	0.60	+4.8
3,068,203	+		CCNA_02910	0.62	-1.4
3,068,204	+		CCNA_02910	0.62	+0.1
3,068,211	-		CCNA_02910	0.62	+3.9
3,068,211	-		CCNA_02910	0.62	+4.2
3,068,221	-		CCNA_02910	0.62	+4.4
3,068,221	-		CCNA_02910	0.62	+4.4
3,068,223	+		CCNA_02910	0.62	-0.1
3,068,231	-		CCNA_02910	0.63	+4.5
3,068,258	-		CCNA_02910	0.63	+4.5
3,068,285	-		CCNA_02910	0.64	+4.3
3,068,328	+		CCNA_02910	0.66	+5.0
3,068,333	+		CCNA_02910	0.66	+0.4
3,068,336	-		CCNA_02910	0.66	+4.2
3,068,347	-		CCNA_02910	0.66	+4.6
3,068,365	+		CCNA_02910	0.67	+4.8
3,068,365	+		CCNA_02910	0.67	+4.5
3,068,373	-		CCNA_02910	0.67	+2.7
3,068,409	+		CCNA_02910	0.69	+0.5
3,068,426	-		CCNA_02910	0.69	+3.3
3,068,441	+		CCNA_02910	0.70	-0.3
3,068,500	+		CCNA_02910	0.72	+1.7
3,068,519	+		CCNA_02910	0.72	-0.6
3,068,527	-		CCNA_02910	0.73	+4.1
3,068,527	-		CCNA_02910	0.73	+4.0
3,068,527	-		CCNA_02910	0.73	+4.0
3,068,527	-		CCNA_02910	0.73	+4.6
3,068,527	-		CCNA_02910	0.73	+3.9
3,068,527	-		CCNA_02910	0.73	+3.9
3,068,527	-		CCNA_02910	0.73	+4.3
3,068,527	-		CCNA_02910	0.73	+3.1
3,068,527	-		CCNA_02910	0.73	+4.3
3,068,597	-		CCNA_02910	0.75	+3.9
3,068,639	+		CCNA_02910	0.76	+0.2
3,068,659	+		CCNA_02910	0.77	+0.7
3,068,661	+		CCNA_02910	0.77	-0.1
3,068,666	+		CCNA_02910	0.77	+0.3
3,068,666	+		CCNA_02910	0.77	+1.7
3,068,666	+		CCNA_02910	0.77	+0.8
3,068,674	-		CCNA_02910	0.78	+4.5
3,068,696	+		CCNA_02910	0.78	+2.3
3,068,696	+		CCNA_02910	0.78	-2.5
3,068,706	+		CCNA_02910	0.79	-0.4
3,068,706	+		CCNA_02910	0.79	-0.7
3,068,706	+		CCNA_02910	0.79	+2.7
3,068,714	-		CCNA_02910	0.79	+4.5
3,068,714	-		CCNA_02910	0.79	+4.3
3,068,714	-		CCNA_02910	0.79	+5.4
3,068,714	-		CCNA_02910	0.79	+4.8
3,068,722	-		CCNA_02910	0.79	+4.6
3,068,804	+		CCNA_02910	0.82	+0.8
3,068,812	-		CCNA_02910	0.82	+4.7
3,068,857	+		CCNA_02910	0.84	-0.4
3,068,865	-		CCNA_02910	0.84	+4.2
3,068,903	-		CCNA_02910	0.85	+3.4
3,068,904	+		CCNA_02910	0.85	+1.1
3,068,904	+		CCNA_02910	0.85	-0.3
3,068,904	+		CCNA_02910	0.85	+0.1
3,068,904	+		CCNA_02910	0.85	-0.7
3,068,912	-		CCNA_02910	0.86	+4.4
3,068,912	-		CCNA_02910	0.86	+4.3
3,068,912	-		CCNA_02910	0.86	+4.5
3,068,912	-		CCNA_02910	0.86	+3.7
3,068,912	-		CCNA_02910	0.86	+4.4
3,068,922	-		CCNA_02910	0.86	+3.9
3,068,937	-				+4.5
3,068,937	-		CCNA_02910	0.87	+3.8
3,068,937	-		CCNA_02910	0.87	+4.2
3,068,938	-		CCNA_02910	0.87	+4.0
3,068,943	-		CCNA_02910	0.87	+4.0
3,068,956	-		CCNA_02910	0.87	+4.3
3,068,972	-		CCNA_02910	0.88	+4.5
3,068,972	-		CCNA_02910	0.88	+3.7
3,068,986	+		CCNA_02910	0.88	-1.0
3,068,986	+		CCNA_02910	0.88	-2.1
3,069,017	-		CCNA_02910	0.89	+4.3
3,069,027	-		CCNA_02910	0.90	+3.9
3,069,032	-		CCNA_02910	0.90	+3.9
3,069,038	-				+4.1
3,069,055	+				-2.1
3,069,076	-				+3.8
3,069,098	-				+4.0
3,069,133	-				+3.7
3,069,160	+				-0.1
3,069,170	+				+2.2
3,069,178	-				+3.9
3,069,178	-				+3.1
3,069,178	-				+2.7
3,069,178	-				+4.0
3,069,183	-				+3.4
3,069,213	+				-1.3
3,069,221	-				+3.8
3,069,239	-				+3.5
3,069,244	-				+3.1
3,069,283	+				-1.4
3,069,283	+				+0.7
3,069,283	+				+1.2
3,069,283	+				+2.7
3,069,283	+				+1.5
3,069,291	-				+3.4
3,069,291	-				+3.3
3,069,291	-				+3.4
3,069,291	-				+3.2
3,069,291	-				+3.0
3,069,291	-				+4.8
3,069,291	-				+3.5
3,069,313	-				+2.9
3,069,362	+				+1.2
3,069,370	-				+2.9
3,069,370	-				+2.7
3,069,412	-				+4.4
3,069,414	-				+3.0
3,069,425	-				+3.1
3,069,425	-				+3.1
3,069,431	-				+1.5
3,069,443	-				+4.9
3,069,578	+				-2.1
3,069,743	+				-0.3
3,069,743	+				+0.1
3,069,751	-				-0.2
3,069,775	+				-0.0
3,069,810	+				+0.2
3,069,810	+				+1.3
3,069,818	-				-1.5
3,069,818	-				-0.2
3,069,888	+				-0.3
3,069,940	+				-0.7
3,069,966	+				-1.4
3,070,009	-		CCNA_02912	0.11	+1.7
3,070,059	+		CCNA_02912	0.18	-0.9
3,070,059	+		CCNA_02912	0.18	-0.8
3,070,072	+		CCNA_02912	0.20	+0.9
3,070,074	-		CCNA_02912	0.20	+1.9
3,070,079	-		CCNA_02912	0.21	+0.5
3,070,121	+		CCNA_02912	0.27	-0.2
3,070,121	+		CCNA_02912	0.27	+0.8
3,070,121	+		CCNA_02912	0.27	+0.9
3,070,121	+		CCNA_02912	0.27	-1.4
3,070,131	+		CCNA_02912	0.28	-0.3
3,070,150	+		CCNA_02912	0.31	+1.0
3,070,150	+		CCNA_02912	0.31	+2.4
3,070,158	-		CCNA_02912	0.32	+0.7
3,070,158	-		CCNA_02912	0.32	+0.4
3,070,158	-		CCNA_02912	0.32	+0.4
3,070,168	+		CCNA_02912	0.33	+0.1
3,070,177	+		CCNA_02912	0.34	+1.9
3,070,185	-		CCNA_02912	0.36	-0.8
3,070,218	+		CCNA_02912	0.40	-0.1
3,070,218	+		CCNA_02912	0.40	-1.1
3,070,218	-		CCNA_02912	0.40	+0.3
3,070,221	-		CCNA_02912	0.40	-0.2
3,070,259	+		CCNA_02912	0.46	+0.5
3,070,265	-		CCNA_02912	0.46	+1.1
3,070,267	-		CCNA_02912	0.47	-0.7
3,070,267	-		CCNA_02912	0.47	+0.2
3,070,315	+		CCNA_02912	0.53	+1.1
3,070,320	+		CCNA_02912	0.54	+1.2