Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02861

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,012,201	+				-0.9
3,012,209	-				-0.1
3,012,215	+		CCNA_02860	0.10	+1.3
3,012,231	+		CCNA_02860	0.12	+2.3
3,012,282	-		CCNA_02860	0.18	+1.1
3,012,282	-		CCNA_02860	0.18	+2.0
3,012,350	+		CCNA_02860	0.25	-0.8
3,012,358	-		CCNA_02860	0.26	+1.5
3,012,358	-		CCNA_02860	0.26	+0.4
3,012,363	-		CCNA_02860	0.26	+0.7
3,012,389	+		CCNA_02860	0.29	-0.9
3,012,395	+		CCNA_02860	0.30	+1.5
3,012,479	+		CCNA_02860	0.38	+1.2
3,012,487	-		CCNA_02860	0.39	+0.7
3,012,501	+		CCNA_02860	0.41	+0.7
3,012,507	-		CCNA_02860	0.41	-0.1
3,012,508	-		CCNA_02860	0.41	+0.3
3,012,508	-		CCNA_02860	0.41	-0.4
3,012,508	-		CCNA_02860	0.41	+0.8
3,012,509	-		CCNA_02860	0.42	+1.2
3,012,509	-		CCNA_02860	0.42	+2.5
3,012,719	-		CCNA_02860	0.64	-0.0
3,012,729	-		CCNA_02860	0.65	-1.0
3,012,767	+		CCNA_02860	0.69	+0.9
3,012,772	+		CCNA_02860	0.69	+0.2
3,012,775	-		CCNA_02860	0.70	+0.9
3,012,780	-		CCNA_02860	0.70	+2.1
3,012,780	-		CCNA_02860	0.70	+2.4
3,012,856	+		CCNA_02860	0.78	+1.8
3,012,859	-		CCNA_02860	0.79	+2.3
3,012,864	-		CCNA_02860	0.79	+1.4
3,012,864	-		CCNA_02860	0.79	+0.3
3,012,899	+		CCNA_02860	0.83	+1.2
3,012,909	+		CCNA_02860	0.84	+2.0
3,012,909	+		CCNA_02860	0.84	+1.2
3,012,917	-		CCNA_02860	0.85	+0.8
3,012,917	-		CCNA_02860	0.85	-1.3
3,012,938	-		CCNA_02860	0.87	+0.6
3,012,957	+		CCNA_02860	0.89	+0.2
3,012,994	-				+0.6
3,013,001	+				+1.1
3,013,056	-				-2.6
3,013,068	+				+2.6
3,013,081	-				+2.0
3,013,091	+				-0.6
3,013,113	+				-0.3
3,013,182	+				-0.7
3,013,197	+				+1.2
3,013,198	+				+0.3
3,013,198	+				-2.0
3,013,198	+				-0.7
3,013,216	-				+0.5
3,013,258	+				+2.3
3,013,288	+				+1.6
3,013,288	+				+3.6
3,013,288	+				-0.0
3,013,288	+				+1.6
3,013,296	-				-0.2
3,013,319	-				+0.0
3,013,342	+				+1.0
3,013,365	+				-0.4
3,013,455	-		CCNA_02861	0.12	+0.5
3,013,466	+		CCNA_02861	0.13	+0.0
3,013,491	+		CCNA_02861	0.14	-1.6
3,013,540	-		CCNA_02861	0.15	+3.0
3,013,545	+		CCNA_02861	0.16	+1.2
3,013,589	-		CCNA_02861	0.17	-0.7
3,013,648	+		CCNA_02861	0.20	+0.2
3,013,671	-		CCNA_02861	0.21	-0.9
3,013,696	+		CCNA_02861	0.22	+0.6
3,013,730	+		CCNA_02861	0.23	+0.1
3,013,803	+		CCNA_02861	0.26	+0.6
3,013,803	+		CCNA_02861	0.26	+0.6
3,013,803	+		CCNA_02861	0.26	-0.1
3,013,809	-		CCNA_02861	0.26	-0.4
3,013,811	-		CCNA_02861	0.26	-0.0
3,013,811	-		CCNA_02861	0.26	-0.9
3,013,811	-		CCNA_02861	0.26	-0.3
3,013,811	-		CCNA_02861	0.26	+0.4
3,013,838	-		CCNA_02861	0.27	-0.3
3,013,855	-		CCNA_02861	0.28	+0.4
3,013,881	+		CCNA_02861	0.29	+2.3
3,013,891	+		CCNA_02861	0.29	+0.7
3,013,936	-		CCNA_02861	0.31	+2.0
3,014,011	+		CCNA_02861	0.34	+0.5
3,014,049	+		CCNA_02861	0.36	+0.8
3,014,092	-		CCNA_02861	0.37	+3.8
3,014,125	+		CCNA_02861	0.39	+0.7
3,014,182	+		CCNA_02861	0.41	+2.5
3,014,182	+		CCNA_02861	0.41	+2.0
3,014,182	+		CCNA_02861	0.41	+2.9
3,014,190	-		CCNA_02861	0.41	-0.1
3,014,190	-		CCNA_02861	0.41	-0.3
3,014,196	+		CCNA_02861	0.41	+0.2
3,014,196	+		CCNA_02861	0.41	-0.4
3,014,196	+		CCNA_02861	0.41	+0.5
3,014,204	-		CCNA_02861	0.42	-1.4
3,014,218	+		CCNA_02861	0.42	-0.2
3,014,218	+		CCNA_02861	0.42	-2.1
3,014,239	-		CCNA_02861	0.43	-0.8
3,014,244	-		CCNA_02861	0.43	+2.1
3,014,260	+		CCNA_02861	0.44	-0.3
3,014,363	+				+1.8
3,014,365	-		CCNA_02861	0.48	+0.2
3,014,389	+		CCNA_02861	0.49	+0.2
3,014,458	-		CCNA_02861	0.52	+1.3
3,014,461	-		CCNA_02861	0.52	+0.9
3,014,474	+		CCNA_02861	0.52	-0.6
3,014,482	-		CCNA_02861	0.53	+1.0
3,014,511	+		CCNA_02861	0.54	+0.5
3,014,580	-		CCNA_02861	0.57	+0.5
3,014,580	-		CCNA_02861	0.57	+0.2
3,014,584	-		CCNA_02861	0.57	+1.8
3,014,597	-		CCNA_02861	0.57	+1.9
3,014,603	-		CCNA_02861	0.57	+0.7
3,014,624	-		CCNA_02861	0.58	-0.2
3,014,631	-		CCNA_02861	0.59	-0.0
3,014,686	+		CCNA_02861	0.61	-0.1
3,014,686	+		CCNA_02861	0.61	-0.6
3,014,694	-		CCNA_02861	0.61	+2.0
3,014,707	+		CCNA_02861	0.62	+0.8
3,014,709	-		CCNA_02861	0.62	-0.9
3,014,715	-		CCNA_02861	0.62	-1.5
3,014,715	-		CCNA_02861	0.62	+0.6
3,014,716	+		CCNA_02861	0.62	-0.7
3,014,779	-		CCNA_02861	0.64	+1.0
3,014,787	+		CCNA_02861	0.65	-1.1
3,014,787	+		CCNA_02861	0.65	+0.2
3,014,800	-		CCNA_02861	0.65	-0.1
3,014,830	+		CCNA_02861	0.66	-0.3
3,014,830	+		CCNA_02861	0.66	-0.7
3,014,908	+		CCNA_02861	0.69	+0.0
3,014,913	+		CCNA_02861	0.70	+1.8
3,014,916	-		CCNA_02861	0.70	-0.4
3,014,921	-		CCNA_02861	0.70	+2.2
3,014,921	-		CCNA_02861	0.70	+2.2
3,014,924	+		CCNA_02861	0.70	-0.2
3,014,934	+		CCNA_02861	0.70	-0.9
3,014,942	+		CCNA_02861	0.71	+0.9
3,014,950	-		CCNA_02861	0.71	+0.8
3,014,972	-		CCNA_02861	0.72	+1.3
3,015,036	+		CCNA_02861	0.75	-1.4
3,015,036	+		CCNA_02861	0.75	-1.0
3,015,044	-		CCNA_02861	0.75	-1.3
3,015,073	+		CCNA_02861	0.76	+0.5
3,015,081	-		CCNA_02861	0.76	+0.6
3,015,081	-		CCNA_02861	0.76	+0.7
3,015,082	-		CCNA_02861	0.76	-0.5
3,015,126	-		CCNA_02861	0.78	+1.1
3,015,126	-		CCNA_02861	0.78	+0.7
3,015,178	+		CCNA_02861	0.80	+0.0
3,015,185	-		CCNA_02861	0.80	+0.0
3,015,222	-		CCNA_02861	0.82	+1.2
3,015,227	-		CCNA_02861	0.82	+1.2
3,015,339	-				+0.5
3,015,342	+				-0.1
3,015,342	+				+0.4
3,015,350	-				+0.7
3,015,412	+				+2.3
3,015,412	+				-0.1
3,015,420	-				-0.5
3,015,427	+				-0.1
3,015,435	-				+0.4
3,015,481	+				+0.4
3,015,501	-				+1.8
3,015,514	+				+1.8
3,015,516	+				-0.0
3,015,516	+				-0.3
3,015,522	-				+1.5
3,015,524	-				+0.9
3,015,524	-				+1.3
3,015,573	+				+0.3
3,015,597	+				-0.3
3,015,611	+				+0.9
3,015,619	-				+0.5
3,015,669	+				-0.5
3,015,669	+				+3.0
3,015,669	+				+0.9
3,015,672	-				-0.3
3,015,674	+				+0.1
3,015,677	-				+1.8
3,015,677	-				-0.5
3,015,712	+		CCNA_02862	0.26	+1.0
3,015,712	+		CCNA_02862	0.26	+0.5
3,015,717	+		CCNA_02862	0.26	-0.9
3,015,720	-		CCNA_02862	0.26	-0.6
3,015,720	-		CCNA_02862	0.26	+1.0
3,015,720	-		CCNA_02862	0.26	-2.1
3,015,720	-		CCNA_02862	0.26	-0.4
3,015,720	-		CCNA_02862	0.26	+1.2
3,015,737	-		CCNA_02862	0.27	+0.2
3,015,792	-		CCNA_02862	0.31	-0.2
3,015,824	+		CCNA_02862	0.33	-0.1
3,015,840	+		CCNA_02862	0.34	+0.1
3,015,840	+		CCNA_02862	0.34	-0.6
3,015,840	+		CCNA_02862	0.34	-0.5
3,015,848	-		CCNA_02862	0.34	-0.1
3,015,848	-		CCNA_02862	0.34	+0.3
3,015,848	-		CCNA_02862	0.34	+0.2
3,015,848	-		CCNA_02862	0.34	+1.5
3,015,872	+		CCNA_02862	0.36	-0.2
3,015,874	-		CCNA_02862	0.36	+1.6
3,015,874	-		CCNA_02862	0.36	+0.9
3,015,879	-		CCNA_02862	0.36	+1.0
3,015,885	-		CCNA_02862	0.37	+0.2
3,015,910	+		CCNA_02862	0.38	+2.3
3,015,942	-		CCNA_02862	0.41	-1.2
3,015,955	+		CCNA_02862	0.41	+1.2
3,015,971	+		CCNA_02862	0.42	-0.6
3,015,981	+		CCNA_02862	0.43	+1.8
3,015,981	+		CCNA_02862	0.43	+1.0
3,015,989	-		CCNA_02862	0.44	+1.7
3,015,991	+		CCNA_02862	0.44	-0.1
3,015,997	-		CCNA_02862	0.44	+0.4
3,015,999	-		CCNA_02862	0.44	+0.9
3,016,022	+		CCNA_02862	0.46	+0.8
3,016,034	+		CCNA_02862	0.46	+1.3
3,016,034	+		CCNA_02862	0.46	-1.0
3,016,034	-		CCNA_02862	0.46	+1.5
3,016,039	+		CCNA_02862	0.47	+2.3
3,016,039	+		CCNA_02862	0.47	+1.8
3,016,047	-		CCNA_02862	0.47	+0.0
3,016,047	-		CCNA_02862	0.47	-0.9
3,016,047	-		CCNA_02862	0.47	+2.2
3,016,047	-		CCNA_02862	0.47	-1.4
3,016,047	-		CCNA_02862	0.47	+0.4
3,016,093	-		CCNA_02862	0.50	+0.2
3,016,114	-		CCNA_02862	0.52	+0.9
3,016,129	-		CCNA_02862	0.53	+0.5
3,016,136	-		CCNA_02862	0.53	+1.0
3,016,174	+		CCNA_02862	0.56	+2.6
3,016,174	+		CCNA_02862	0.56	+2.0
3,016,174	+		CCNA_02862	0.56	+1.2
3,016,181	-		CCNA_02862	0.56	+0.8
3,016,182	-		CCNA_02862	0.56	+2.6
3,016,187	-		CCNA_02862	0.56	+0.5
3,016,189	+		CCNA_02862	0.57	+1.2
3,016,189	+		CCNA_02862	0.57	+2.3
3,016,197	-		CCNA_02862	0.57	-0.1
3,016,241	-		CCNA_02862	0.60	+1.0
3,016,247	+		CCNA_02862	0.60	+2.3
3,016,247	+		CCNA_02862	0.60	+1.2
3,016,247	+		CCNA_02862	0.60	-0.5
3,016,255	-		CCNA_02862	0.61	+4.3
3,016,255	-		CCNA_02862	0.61	-0.7
3,016,255	-		CCNA_02862	0.61	+0.1
3,016,260	+		CCNA_02862	0.61	+1.8
3,016,260	+		CCNA_02862	0.61	+2.0
3,016,279	-		CCNA_02862	0.62	-0.4
3,016,294	+		CCNA_02862	0.63	+2.0
3,016,360	-		CCNA_02862	0.68	+0.7
3,016,362	+		CCNA_02862	0.68	-1.3
3,016,368	-		CCNA_02862	0.68	-0.8
3,016,370	-		CCNA_02862	0.68	+1.6
3,016,382	-		CCNA_02862	0.69	+2.0
3,016,382	-		CCNA_02862	0.69	+2.3
3,016,385	+		CCNA_02862	0.69	+1.2
3,016,434	+		CCNA_02862	0.72	+3.4
3,016,475	+		CCNA_02862	0.75	+1.2
3,016,493	+		CCNA_02862	0.76	-0.4
3,016,498	+		CCNA_02862	0.77	+3.2
3,016,581	+		CCNA_02862	0.82	-0.4
3,016,654	-		CCNA_02862	0.87	+1.8
3,016,671	-		CCNA_02862	0.88	+4.1
3,016,675	+		CCNA_02862	0.88	-0.5
3,016,678	-		CCNA_02862	0.88	-0.1