Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02852

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,004,390	-		CCNA_02850	0.82	-1.0
3,004,438	-		CCNA_02850	0.87	-2.1
3,004,450	-		CCNA_02850	0.88	-1.0
3,004,526	-				-1.0
3,004,534	+				+1.3
3,004,536	-				-0.8
3,004,592	+				+0.2
3,004,592	+				-0.2
3,004,600	-				+0.9
3,004,600	-				+0.1
3,004,664	-				+3.4
3,004,670	+				+0.1
3,004,670	+				+0.5
3,004,670	+				-0.2
3,004,670	+				-0.9
3,004,724	+				+1.2
3,004,724	+				+0.6
3,004,724	+				-0.6
3,004,724	+				-2.0
3,004,724	+				+2.6
3,004,724	+				+0.6
3,004,727	-				+2.0
3,004,732	-				+0.7
3,004,732	-				-0.2
3,004,752	+				+1.0
3,004,760	-		CCNA_02851	0.11	-1.2
3,004,762	+		CCNA_02851	0.11	-0.0
3,004,767	+		CCNA_02851	0.12	+1.0
3,004,775	-		CCNA_02851	0.13	+1.8
3,004,790	-		CCNA_02851	0.15	+1.5
3,004,821	+		CCNA_02851	0.20	-1.8
3,004,821	+		CCNA_02851	0.20	+0.8
3,004,847	+		CCNA_02851	0.23	-0.5
3,004,914	+		CCNA_02851	0.33	+1.9
3,004,915	-		CCNA_02851	0.33	-0.0
3,004,931	+		CCNA_02851	0.35	+1.3
3,004,936	+		CCNA_02851	0.36	-1.2
3,004,936	+		CCNA_02851	0.36	+0.3
3,004,944	-		CCNA_02851	0.37	-1.3
3,004,953	+		CCNA_02851	0.39	+0.8
3,004,954	+		CCNA_02851	0.39	+2.3
3,004,970	-		CCNA_02851	0.41	+1.6
3,004,972	+		CCNA_02851	0.41	-1.5
3,004,980	-		CCNA_02851	0.43	-0.1
3,004,992	-		CCNA_02851	0.44	-0.5
3,005,002	+		CCNA_02851	0.46	-0.1
3,005,011	+		CCNA_02851	0.47	+0.7
3,005,026	+		CCNA_02851	0.49	+1.5
3,005,034	-		CCNA_02851	0.50	-0.8
3,005,049	+		CCNA_02851	0.53	+1.2
3,005,049	+		CCNA_02851	0.53	+0.6
3,005,053	+		CCNA_02851	0.53	+1.2
3,005,071	+		CCNA_02851	0.56	+1.2
3,005,117	-		CCNA_02851	0.62	-0.1
3,005,117	-		CCNA_02851	0.62	+1.0
3,005,238	+		CCNA_02851	0.80	-0.3
3,005,246	-		CCNA_02851	0.81	+0.1
3,005,246	-		CCNA_02851	0.81	+1.9
3,005,246	-		CCNA_02851	0.81	-0.4
3,005,259	-		CCNA_02851	0.83	+2.2
3,005,280	-		CCNA_02851	0.86	+0.4
3,005,282	-		CCNA_02851	0.86	-1.1
3,005,297	+		CCNA_02851	0.88	+1.6
3,005,298	-		CCNA_02851	0.88	-0.5
3,005,302	+		CCNA_02851	0.89	+0.8
3,005,303	-		CCNA_02851	0.89	+0.0
3,005,305	-		CCNA_02851	0.89	+1.4
3,005,310	-				-0.1
3,005,378	-				+1.7
3,005,422	-				+2.3
3,005,503	+				+1.2
3,005,506	-				+3.0
3,005,519	+		CCNA_02852	0.10	+1.6
3,005,519	+		CCNA_02852	0.10	+1.0
3,005,527	-		CCNA_02852	0.11	+0.7
3,005,543	-		CCNA_02852	0.12	+1.7
3,005,571	+		CCNA_02852	0.14	-0.0
3,005,573	-		CCNA_02852	0.14	+1.9
3,005,610	-				+2.6
3,005,641	-		CCNA_02852	0.19	-0.7
3,005,676	+		CCNA_02852	0.22	+0.8
3,005,694	-		CCNA_02852	0.23	+1.1
3,005,694	-		CCNA_02852	0.23	+3.2
3,005,738	+		CCNA_02852	0.26	-0.1
3,005,745	+		CCNA_02852	0.27	+2.3
3,005,745	+		CCNA_02852	0.27	+0.0
3,005,753	-		CCNA_02852	0.27	+1.9
3,005,758	-		CCNA_02852	0.28	+1.3
3,005,765	+		CCNA_02852	0.28	+0.3
3,005,778	-		CCNA_02852	0.29	+2.3
3,005,779	-		CCNA_02852	0.29	+2.1
3,005,780	-		CCNA_02852	0.29	+1.2
3,005,782	+		CCNA_02852	0.29	+0.3
3,005,823	+		CCNA_02852	0.32	-0.3
3,005,836	+		CCNA_02852	0.33	+1.1
3,005,848	-		CCNA_02852	0.34	+0.8
3,005,948	-		CCNA_02852	0.42	+0.8
3,005,957	-		CCNA_02852	0.42	+0.8
3,005,957	-		CCNA_02852	0.42	+3.0
3,005,967	-		CCNA_02852	0.43	+1.2
3,005,986	+		CCNA_02852	0.44	+1.0
3,006,018	-		CCNA_02852	0.47	+0.5
3,006,021	+		CCNA_02852	0.47	-1.8
3,006,021	+		CCNA_02852	0.47	-1.2
3,006,029	-		CCNA_02852	0.47	+0.3
3,006,052	-		CCNA_02852	0.49	+1.4
3,006,052	-		CCNA_02852	0.49	+2.6
3,006,088	-		CCNA_02852	0.52	+1.3
3,006,088	-		CCNA_02852	0.52	+0.7
3,006,100	+		CCNA_02852	0.53	-1.6
3,006,158	+		CCNA_02852	0.57	-2.5
3,006,166	-		CCNA_02852	0.57	+1.8
3,006,203	-		CCNA_02852	0.60	+1.6
3,006,213	+		CCNA_02852	0.61	+1.0
3,006,222	-		CCNA_02852	0.62	+0.9
3,006,248	-		CCNA_02852	0.63	+0.0
3,006,255	-		CCNA_02852	0.64	+0.9
3,006,273	+		CCNA_02852	0.65	-0.7
3,006,281	-		CCNA_02852	0.66	+1.1
3,006,281	-		CCNA_02852	0.66	+1.9
3,006,294	-		CCNA_02852	0.67	+1.8
3,006,325	+		CCNA_02852	0.69	-0.0
3,006,328	-		CCNA_02852	0.69	+3.2
3,006,328	-		CCNA_02852	0.69	+1.5
3,006,347	-		CCNA_02852	0.71	+2.5
3,006,347	-		CCNA_02852	0.71	+0.3
3,006,366	+		CCNA_02852	0.72	+0.7
3,006,369	-		CCNA_02852	0.72	+0.8
3,006,369	-		CCNA_02852	0.72	+1.9
3,006,374	-		CCNA_02852	0.73	+1.0
3,006,383	+		CCNA_02852	0.73	+1.8
3,006,390	-		CCNA_02852	0.74	+1.2
3,006,398	-		CCNA_02852	0.74	+1.9
3,006,411	+		CCNA_02852	0.75	+1.0
3,006,419	-		CCNA_02852	0.76	+0.7
3,006,419	-		CCNA_02852	0.76	+3.4
3,006,484	-		CCNA_02852	0.81	+2.0
3,006,487	+		CCNA_02852	0.81	+1.5
3,006,595	-		CCNA_02852	0.89	+2.6
3,006,620	+				-0.5
3,006,625	+				+1.2
3,006,625	+				-1.2
3,006,625	+				-0.4
3,006,625	+				-1.3
3,006,625	+				+1.2
3,006,625	+				+1.3
3,006,625	+				+1.6
3,006,625	+				-0.1
3,006,625	+				+0.2
3,006,625	+				-0.0
3,006,625	+				+1.8
3,006,625	+				+0.5
3,006,625	+				+1.2
3,006,625	+				-0.0
3,006,625	+				+2.8
3,006,625	+				+0.5
3,006,625	+				+0.1
3,006,625	+				-0.2
3,006,625	+				+2.3
3,006,633	-				+1.0
3,006,633	-				+2.7
3,006,633	-				+0.7
3,006,633	-				+2.6
3,006,633	-				+1.5
3,006,633	-				-0.4
3,006,633	-				+0.7
3,006,633	-				-0.5
3,006,633	-				-0.9
3,006,633	-				+1.0
3,006,633	-				+0.5
3,006,633	-				+1.1
3,006,633	-				+1.4
3,006,633	-				-1.0
3,006,633	-				+0.7
3,006,633	-				+1.1
3,006,633	-				+1.5
3,006,633	-				-0.1
3,006,633	-				+0.2
3,006,633	-				+0.6
3,006,633	-				+0.0
3,006,657	+				-0.5
3,006,677	-				-0.3
3,006,712	-				+2.3
3,006,716	-				+0.9
3,006,733	-				+1.3
3,006,741	+				+1.0
3,006,764	+				+1.6
3,006,772	-				+1.5
3,006,816	-				+0.2
3,006,844	+				-0.5
3,006,869	+				+0.6
3,006,884	-				-0.7
3,006,886	+				+0.9
3,006,908	+				+1.3
3,006,924	+				-0.7
3,006,924	+				-0.8
3,006,924	+				+1.1
3,006,924	+				+0.7
3,006,929	+				+2.6
3,006,932	-				+0.7
3,006,932	-				+1.0
3,006,932	-				+0.8
3,006,934	+				+0.5
3,006,937	-				-0.6
3,006,969	+				-0.0
3,006,991	-				-0.0
3,007,020	+				+0.6
3,007,022	-				-0.4
3,007,047	+				+0.9
3,007,071	-		CCNA_02853	0.12	-1.4
3,007,080	-		CCNA_02853	0.12	+1.2
3,007,106	-		CCNA_02853	0.14	-1.4
3,007,111	-		CCNA_02853	0.14	-0.1
3,007,127	-		CCNA_02853	0.16	+0.6
3,007,127	-		CCNA_02853	0.16	+1.3
3,007,127	-		CCNA_02853	0.16	-0.0
3,007,204	+		CCNA_02853	0.21	-0.2
3,007,212	-		CCNA_02853	0.22	+0.7
3,007,225	-		CCNA_02853	0.23	+0.7
3,007,225	-		CCNA_02853	0.23	+0.1
3,007,253	+		CCNA_02853	0.25	+1.2
3,007,253	+		CCNA_02853	0.25	-0.4
3,007,253	+		CCNA_02853	0.25	+1.0
3,007,253	+		CCNA_02853	0.25	-0.3
3,007,258	-		CCNA_02853	0.25	+0.0
3,007,261	-		CCNA_02853	0.25	+0.1
3,007,261	-				+2.6
3,007,294	+		CCNA_02853	0.28	-1.1
3,007,302	-		CCNA_02853	0.28	+0.5
3,007,374	-		CCNA_02853	0.33	-0.5
3,007,429	-		CCNA_02853	0.37	-0.1
3,007,431	+		CCNA_02853	0.37	+0.7
3,007,432	+		CCNA_02853	0.37	+1.6
3,007,453	+		CCNA_02853	0.39	-0.6
3,007,455	-		CCNA_02853	0.39	+0.8
3,007,523	+		CCNA_02853	0.44	-0.2
3,007,554	+		CCNA_02853	0.46	-0.9
3,007,570	-		CCNA_02853	0.47	+0.5
3,007,624	-		CCNA_02853	0.51	+2.1
3,007,629	-		CCNA_02853	0.52	+2.8
3,007,700	+		CCNA_02853	0.57	+0.3
3,007,739	-		CCNA_02853	0.59	+0.8