Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02840

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,993,310	+		CCNA_02839	0.70	-0.3
2,993,363	+		CCNA_02839	0.72	+0.8
2,993,366	-		CCNA_02839	0.72	+0.6
2,993,384	+		CCNA_02839	0.72	+0.6
2,993,392	-		CCNA_02839	0.73	-0.8
2,993,392	-		CCNA_02839	0.73	+0.6
2,993,403	-		CCNA_02839	0.73	+1.0
2,993,408	+		CCNA_02839	0.73	+1.7
2,993,416	-		CCNA_02839	0.74	+1.0
2,993,435	+		CCNA_02839	0.74	+0.8
2,993,435	-		CCNA_02839	0.74	+1.7
2,993,450	-		CCNA_02839	0.75	+2.7
2,993,452	+		CCNA_02839	0.75	-0.2
2,993,464	+		CCNA_02839	0.75	+2.1
2,993,464	+		CCNA_02839	0.75	+0.1
2,993,472	-		CCNA_02839	0.76	+1.1
2,993,484	+		CCNA_02839	0.76	+3.1
2,993,490	-		CCNA_02839	0.76	-0.7
2,993,528	-		CCNA_02839	0.77	+2.2
2,993,544	+		CCNA_02839	0.78	+1.2
2,993,565	-		CCNA_02839	0.79	+0.5
2,993,672	+		CCNA_02839	0.82	+1.9
2,993,690	-		CCNA_02839	0.83	-0.1
2,993,705	-		CCNA_02839	0.84	+1.4
2,993,708	+		CCNA_02839	0.84	+3.1
2,993,708	+		CCNA_02839	0.84	-0.2
2,993,708	+		CCNA_02839	0.84	+1.5
2,993,708	+		CCNA_02839	0.84	+1.7
2,993,708	+		CCNA_02839	0.84	+1.9
2,993,728	-		CCNA_02839	0.84	+0.8
2,993,736	-		CCNA_02839	0.85	-0.7
2,993,747	+		CCNA_02839	0.85	+0.3
2,993,747	+		CCNA_02839	0.85	+2.1
2,993,747	+		CCNA_02839	0.85	+0.6
2,993,747	+		CCNA_02839	0.85	+1.7
2,993,747	+		CCNA_02839	0.85	-1.3
2,993,755	-		CCNA_02839	0.85	-0.0
2,993,755	-		CCNA_02839	0.85	-0.4
2,993,755	-		CCNA_02839	0.85	-1.4
2,993,755	-		CCNA_02839	0.85	+1.9
2,993,755	-		CCNA_02839	0.85	+1.5
2,993,755	-		CCNA_02839	0.85	+1.1
2,993,759	+		CCNA_02839	0.86	-0.1
2,993,759	+		CCNA_02839	0.86	-0.4
2,993,772	-		CCNA_02839	0.86	-1.3
2,993,828	-		CCNA_02839	0.88	-2.2
2,993,889	+				+0.9
2,993,889	+				-0.1
2,993,889	+				+1.9
2,993,916	+				+0.9
2,994,045	-				-0.4
2,994,047	+				+0.1
2,994,047	+				-0.1
2,994,047	+				+2.5
2,994,055	-				-1.2
2,994,062	+				+1.7
2,994,110	-				+0.2
2,994,128	-				+1.7
2,994,190	-				+0.2
2,994,190	-				-0.5
2,994,257	-				-0.0
2,994,282	-				+1.3
2,994,310	+				+0.4
2,994,320	+				-0.3
2,994,324	-				-1.2
2,994,359	-				+0.3
2,994,377	-				+0.4
2,994,409	+		CCNA_02840	0.13	+1.2
2,994,417	-		CCNA_02840	0.14	+0.5
2,994,417	-		CCNA_02840	0.14	+0.5
2,994,457	+		CCNA_02840	0.18	-1.6
2,994,465	-		CCNA_02840	0.19	+2.6
2,994,467	+		CCNA_02840	0.19	-0.1
2,994,567	+		CCNA_02840	0.31	+1.3
2,994,567	+		CCNA_02840	0.31	+1.5
2,994,611	+		CCNA_02840	0.36	+1.4
2,994,630	+		CCNA_02840	0.38	+1.8
2,994,648	-		CCNA_02840	0.40	+1.4
2,994,670	+		CCNA_02840	0.42	+1.1
2,994,670	+		CCNA_02840	0.42	-0.8
2,994,690	-		CCNA_02840	0.45	-0.5
2,994,727	+		CCNA_02840	0.49	-0.8
2,994,735	-		CCNA_02840	0.50	+1.2
2,994,735	-		CCNA_02840	0.50	+0.7
2,994,761	+		CCNA_02840	0.53	-0.4
2,994,795	+		CCNA_02840	0.56	+2.8
2,994,842	-		CCNA_02840	0.62	+1.3
2,994,845	+		CCNA_02840	0.62	+1.4
2,994,848	-		CCNA_02840	0.62	+1.4
2,994,853	-		CCNA_02840	0.63	+1.1
2,994,889	-		CCNA_02840	0.67	+2.3
2,994,908	+		CCNA_02840	0.69	-0.2
2,994,908	+		CCNA_02840	0.69	+2.8
2,994,915	+		CCNA_02840	0.70	+1.6
2,994,915	+		CCNA_02840	0.70	+1.6
2,994,939	+		CCNA_02840	0.73	+0.8
2,994,939	+		CCNA_02840	0.73	+1.9
2,994,939	+		CCNA_02840	0.73	+1.1
2,994,947	-		CCNA_02840	0.74	+1.7
2,994,961	+		CCNA_02840	0.75	+0.7
2,994,971	+		CCNA_02840	0.76	+1.1
2,994,997	-		CCNA_02840	0.79	+0.6
2,995,000	-		CCNA_02840	0.80	+0.2
2,995,016	-				+1.9
2,995,068	+		CCNA_02840	0.87	+1.5
2,995,096	+				+1.3
2,995,096	+				+2.5
2,995,104	-				+0.6
2,995,104	-				+2.5
2,995,104	-				-0.3
2,995,105	+				+3.1
2,995,105	+				+1.0
2,995,108	-				+1.5
2,995,113	-				+0.6
2,995,162	+				+1.1
2,995,171	+				+1.9
2,995,176	+				+1.6
2,995,209	+				+1.1
2,995,227	-				-1.1
2,995,230	+				+0.9
2,995,238	-				+0.2
2,995,285	-				-1.1
2,995,326	+		CCNA_02841	0.24	+1.1
2,995,334	-		CCNA_02841	0.27	+1.7
2,995,372	-		CCNA_02841	0.43	+1.1
2,995,425	+		CCNA_02841	0.65	+3.4
2,995,440	+		CCNA_02841	0.71	-0.1
2,995,456	-		CCNA_02841	0.78	+0.2
2,995,557	+				+1.5
2,995,569	+				-0.5
2,995,574	+				-0.5
2,995,574	+				+1.2
2,995,574	+				+2.7
2,995,582	-				+1.0
2,995,582	-				+0.5
2,995,582	-				-0.2
2,995,582	-				-0.3
2,995,582	-				-0.7
2,995,582	-				-0.5
2,995,582	-				+0.2
2,995,616	+				+0.0
2,995,616	+				-0.3
2,995,653	+				-0.0
2,995,656	-				+0.2
2,995,661	-				-0.2
2,995,662	-				+0.5
2,995,721	+		CCNA_02842	0.13	+1.1
2,995,721	-		CCNA_02842	0.13	+1.0
2,995,738	+		CCNA_02842	0.14	-1.1
2,995,824	+		CCNA_02842	0.20	+1.4
2,995,869	+		CCNA_02842	0.23	+0.1
2,995,869	+		CCNA_02842	0.23	-1.6
2,995,878	-		CCNA_02842	0.24	+0.6
2,995,901	-		CCNA_02842	0.26	+0.0
2,995,917	+		CCNA_02842	0.27	+1.0
2,995,947	-		CCNA_02842	0.29	+0.9
2,995,947	-		CCNA_02842	0.29	-0.4
2,995,951	+		CCNA_02842	0.29	+0.9
2,995,988	+		CCNA_02842	0.32	-0.4
2,996,026	-		CCNA_02842	0.35	-0.1
2,996,040	-		CCNA_02842	0.36	-0.1
2,996,049	+		CCNA_02842	0.36	+2.1
2,996,068	+		CCNA_02842	0.38	+1.0
2,996,068	+		CCNA_02842	0.38	+0.0
2,996,076	-		CCNA_02842	0.38	+2.1
2,996,076	-		CCNA_02842	0.38	+1.2
2,996,098	+		CCNA_02842	0.40	+0.0
2,996,109	-		CCNA_02842	0.41	+1.1
2,996,111	-		CCNA_02842	0.41	-0.4
2,996,111	-		CCNA_02842	0.41	-0.4
2,996,133	-		CCNA_02842	0.42	+2.7
2,996,133	-		CCNA_02842	0.42	+0.5
2,996,133	-		CCNA_02842	0.42	-0.1
2,996,174	+		CCNA_02842	0.45	-0.5
2,996,178	+		CCNA_02842	0.45	+1.1