Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02810

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,966,260	+		CCNA_02809	0.70	+1.1
2,966,273	-		CCNA_02809	0.71	+1.4
2,966,283	+		CCNA_02809	0.71	+0.2
2,966,293	-		CCNA_02809	0.71	-1.1
2,966,309	-		CCNA_02809	0.72	-1.0
2,966,333	+		CCNA_02809	0.73	+2.2
2,966,341	-		CCNA_02809	0.73	+0.4
2,966,379	-		CCNA_02809	0.74	+0.8
2,966,381	-		CCNA_02809	0.74	+0.6
2,966,385	+		CCNA_02809	0.74	+1.2
2,966,392	+		CCNA_02809	0.74	+1.9
2,966,393	+		CCNA_02809	0.75	+1.6
2,966,491	+		CCNA_02809	0.78	-0.2
2,966,500	+		CCNA_02809	0.78	-1.1
2,966,507	-		CCNA_02809	0.78	-1.2
2,966,507	-		CCNA_02809	0.78	+0.1
2,966,531	+		CCNA_02809	0.79	+1.1
2,966,552	-		CCNA_02809	0.79	+0.9
2,966,563	+		CCNA_02809	0.80	-0.4
2,966,563	+		CCNA_02809	0.80	-0.9
2,966,571	-		CCNA_02809	0.80	+0.1
2,966,571	-		CCNA_02809	0.80	+1.1
2,966,597	+		CCNA_02809	0.81	-0.3
2,966,597	+		CCNA_02809	0.81	-0.9
2,966,597	+		CCNA_02809	0.81	+1.5
2,966,605	-		CCNA_02809	0.81	+1.4
2,966,605	-		CCNA_02809	0.81	+0.5
2,966,606	-		CCNA_02809	0.81	+0.5
2,966,615	+		CCNA_02809	0.81	+1.5
2,966,615	+		CCNA_02809	0.81	+0.2
2,966,633	+		CCNA_02809	0.82	+0.9
2,966,633	+		CCNA_02809	0.82	+0.8
2,966,633	+		CCNA_02809	0.82	-0.4
2,966,633	+		CCNA_02809	0.82	-1.7
2,966,641	-		CCNA_02809	0.82	-0.9
2,966,646	-		CCNA_02809	0.82	-0.1
2,966,666	+		CCNA_02809	0.83	+3.1
2,966,666	+		CCNA_02809	0.83	+2.4
2,966,666	+		CCNA_02809	0.83	-0.1
2,966,666	+		CCNA_02809	0.83	+1.4
2,966,674	-		CCNA_02809	0.83	-0.1
2,966,674	-		CCNA_02809	0.83	-1.4
2,966,674	-		CCNA_02809	0.83	-1.1
2,966,674	-		CCNA_02809	0.83	+1.7
2,966,676	+		CCNA_02809	0.83	-0.9
2,966,698	-		CCNA_02809	0.84	-0.6
2,966,705	+		CCNA_02809	0.84	+0.5
2,966,718	-		CCNA_02809	0.85	+0.4
2,966,730	+		CCNA_02809	0.85	+0.1
2,966,732	+		CCNA_02809	0.85	-0.6
2,966,740	-		CCNA_02809	0.85	+1.4
2,966,750	-		CCNA_02809	0.86	+0.9
2,966,808	+		CCNA_02809	0.87	+0.3
2,966,810	+		CCNA_02809	0.87	+0.5
2,966,830	-		CCNA_02809	0.88	+1.5
2,966,870	+		CCNA_02809	0.89	-1.2
2,966,886	+		CCNA_02809	0.90	-1.1
2,966,922	-				-0.1
2,966,931	+				+2.4
2,966,939	-				+0.8
2,966,939	-				+0.7
2,966,945	-				+0.6
2,966,987	-				+1.9
2,967,017	+				+0.9
2,967,022	+				+0.2
2,967,058	-				+0.2
2,967,079	+				+0.4
2,967,079	+				-1.2
2,967,114	+				+0.2
2,967,114	+				+2.1
2,967,115	+				+1.3
2,967,122	-				+3.1
2,967,131	-				+1.7
2,967,148	+				+0.6
2,967,153	+				-1.1
2,967,178	+				-0.3
2,967,186	-				+0.4
2,967,206	-				+0.9
2,967,213	+				+1.5
2,967,243	-				-2.0
2,967,249	+				+3.7
2,967,257	-		CCNA_02810	0.11	+0.5
2,967,290	+		CCNA_02810	0.20	+0.1
2,967,320	+		CCNA_02810	0.29	+0.6
2,967,320	+		CCNA_02810	0.29	+0.5
2,967,320	+		CCNA_02810	0.29	-1.1
2,967,345	+		CCNA_02810	0.37	+0.9
2,967,346	-		CCNA_02810	0.37	+1.7
2,967,351	-		CCNA_02810	0.38	+1.4
2,967,361	+		CCNA_02810	0.41	+1.3
2,967,362	+		CCNA_02810	0.42	-0.6
2,967,363	-		CCNA_02810	0.42	+1.1
2,967,370	-		CCNA_02810	0.44	-0.9
2,967,370	-		CCNA_02810	0.44	-1.8
2,967,372	+		CCNA_02810	0.44	-0.7
2,967,372	+		CCNA_02810	0.44	-0.4
2,967,380	-		CCNA_02810	0.47	+1.2
2,967,392	-		CCNA_02810	0.50	+0.6
2,967,392	-		CCNA_02810	0.50	+1.1
2,967,398	+		CCNA_02810	0.52	-0.9
2,967,428	+		CCNA_02810	0.61	+2.4
2,967,437	-		CCNA_02810	0.63	-0.1
2,967,471	-		CCNA_02810	0.73	+0.9
2,967,475	+		CCNA_02810	0.75	-0.1
2,967,478	-		CCNA_02810	0.75	+0.1
2,967,483	-		CCNA_02810	0.77	-0.1
2,967,483	-		CCNA_02810	0.77	+0.9
2,967,502	-		CCNA_02810	0.82	-0.0
2,967,509	+		CCNA_02810	0.85	+1.1
2,967,516	-		CCNA_02810	0.87	+1.8
2,967,517	-		CCNA_02810	0.87	+0.7
2,967,519	+		CCNA_02810	0.87	+0.1
2,967,519	+		CCNA_02810	0.87	+1.4
2,967,555	+				-0.4
2,967,575	-				+1.2
2,967,620	+				-0.1
2,967,620	+				-1.1
2,967,634	+				-1.0
2,967,634	+				+0.0
2,967,643	-				-0.5
2,967,664	-				-0.1
2,967,667	+				+0.6
2,967,667	+				-0.2
2,967,667	+				+1.0
2,967,667	+				+0.8
2,967,667	+				+1.1
2,967,675	-				+1.2
2,967,678	+				-0.7
2,967,680	+				+0.6
2,967,680	+				+4.0
2,967,680	+				+1.0
2,967,680	+				+1.0
2,967,680	+				-1.0
2,967,680	+				-0.9
2,967,680	+				-0.9
2,967,680	+				+1.9
2,967,680	+				+0.9
2,967,680	+				+0.4
2,967,680	+				+0.2
2,967,680	+				+0.5
2,967,688	-				+0.4
2,967,688	-				+1.8
2,967,688	-				+1.4
2,967,688	-				+0.1
2,967,688	-				-0.0
2,967,688	-				+0.2
2,967,688	-				+1.8
2,967,688	-				+0.4
2,967,688	-				+1.1
2,967,688	-				+1.5
2,967,688	-				+3.4
2,967,688	-				-0.8
2,967,688	-				+1.7
2,967,688	-				+2.7
2,967,688	-				-0.7
2,967,688	-				+1.6
2,967,690	+				+2.1
2,967,690	+				+1.5
2,967,690	+				+0.5
2,967,698	-				-0.5
2,967,698	-				+0.7
2,967,698	-				-1.0
2,967,726	+				+0.2
2,967,753	+				-0.9
2,967,758	+				+0.1
2,967,761	-				+1.3
2,967,772	+				+1.2
2,967,780	-				-0.1
2,967,780	-				+0.4
2,967,780	-				+2.4
2,967,783	+				+2.5
2,967,791	-				+1.1
2,967,803	+				-0.2
2,967,817	+				-0.6
2,967,817	+				-2.2
2,967,829	+		CCNA_02811	0.10	+0.5
2,967,835	-		CCNA_02811	0.10	-0.1
2,967,844	-		CCNA_02811	0.11	+1.4
2,967,849	-		CCNA_02811	0.11	+0.0
2,967,851	+		CCNA_02811	0.11	+2.0
2,967,852	+		CCNA_02811	0.11	-0.5
2,967,852	+		CCNA_02811	0.11	-1.1
2,967,852	+		CCNA_02811	0.11	-1.0
2,967,853	+		CCNA_02811	0.11	+2.8
2,967,853	+		CCNA_02811	0.11	+0.7
2,967,854	-		CCNA_02811	0.11	-0.8
2,967,889	-		CCNA_02811	0.13	+1.9
2,967,891	+		CCNA_02811	0.13	+0.5
2,967,926	-		CCNA_02811	0.15	-0.6
2,967,937	-		CCNA_02811	0.15	+0.9
2,967,960	+		CCNA_02811	0.17	+1.4
2,967,965	+		CCNA_02811	0.17	+1.9
2,968,075	-		CCNA_02811	0.22	+0.4
2,968,075	-		CCNA_02811	0.22	+1.1
2,968,095	+		CCNA_02811	0.23	+1.0
2,968,103	+		CCNA_02811	0.24	+2.0
2,968,105	+		CCNA_02811	0.24	+0.4
2,968,121	-		CCNA_02811	0.24	+0.1
2,968,124	-		CCNA_02811	0.25	+1.3
2,968,150	+		CCNA_02811	0.26	+1.7
2,968,150	+		CCNA_02811	0.26	+0.3
2,968,155	+		CCNA_02811	0.26	-0.8
2,968,163	-		CCNA_02811	0.26	-0.9
2,968,165	+		CCNA_02811	0.27	+0.4
2,968,194	-		CCNA_02811	0.28	+3.1
2,968,206	+		CCNA_02811	0.29	+1.2
2,968,206	+		CCNA_02811	0.29	+0.4
2,968,206	+		CCNA_02811	0.29	+0.0
2,968,206	+		CCNA_02811	0.29	-0.4
2,968,206	+		CCNA_02811	0.29	+1.9
2,968,206	+		CCNA_02811	0.29	+0.8
2,968,206	+		CCNA_02811	0.29	+1.1
2,968,211	+		CCNA_02811	0.29	+1.5
2,968,211	+		CCNA_02811	0.29	+1.1
2,968,214	-		CCNA_02811	0.29	-0.9
2,968,214	-		CCNA_02811	0.29	+3.1
2,968,214	-		CCNA_02811	0.29	-0.6
2,968,214	-		CCNA_02811	0.29	+0.7
2,968,244	+		CCNA_02811	0.30	+0.1
2,968,296	-		CCNA_02811	0.33	-0.2
2,968,306	-		CCNA_02811	0.34	+2.5
2,968,310	+		CCNA_02811	0.34	+1.2
2,968,372	+		CCNA_02811	0.37	+1.7
2,968,382	-		CCNA_02811	0.37	-0.0
2,968,382	-		CCNA_02811	0.37	-1.1
2,968,386	+		CCNA_02811	0.37	+1.9
2,968,391	+		CCNA_02811	0.38	+2.1
2,968,400	+		CCNA_02811	0.38	+0.8
2,968,401	+		CCNA_02811	0.38	-0.7
2,968,408	-		CCNA_02811	0.39	-0.1
2,968,418	+		CCNA_02811	0.39	-0.4
2,968,418	+		CCNA_02811	0.39	+1.9
2,968,433	-		CCNA_02811	0.40	+1.0
2,968,445	+		CCNA_02811	0.40	+0.2
2,968,445	+		CCNA_02811	0.40	-0.9
2,968,468	-		CCNA_02811	0.41	-0.7
2,968,503	-		CCNA_02811	0.43	-1.2
2,968,503	-		CCNA_02811	0.43	-1.8
2,968,503	-		CCNA_02811	0.43	-2.7
2,968,503	-		CCNA_02811	0.43	+0.4
2,968,528	+		CCNA_02811	0.44	+1.4
2,968,543	-		CCNA_02811	0.45	+0.1
2,968,549	+		CCNA_02811	0.45	+1.3