Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02798

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,955,465	-		CCNA_02795	0.32	+0.2
2,955,467	+		CCNA_02795	0.32	+1.6
2,955,467	+		CCNA_02795	0.32	-0.6
2,955,475	-		CCNA_02795	0.34	+0.8
2,955,475	-		CCNA_02795	0.34	+0.2
2,955,496	+		CCNA_02795	0.37	+1.8
2,955,496	+		CCNA_02795	0.37	+2.0
2,955,496	+		CCNA_02795	0.37	+1.5
2,955,496	+		CCNA_02795	0.37	+2.0
2,955,497	-		CCNA_02795	0.37	+1.0
2,955,497	-		CCNA_02795	0.37	+0.3
2,955,504	-		CCNA_02795	0.38	+0.6
2,955,504	-		CCNA_02795	0.38	+1.6
2,955,504	-		CCNA_02795	0.38	-0.6
2,955,540	+		CCNA_02795	0.44	+0.2
2,955,548	-		CCNA_02795	0.45	+1.4
2,955,556	+		CCNA_02795	0.46	+0.6
2,955,561	-		CCNA_02795	0.47	-0.9
2,955,566	+		CCNA_02795	0.48	+0.3
2,955,566	+		CCNA_02795	0.48	-0.3
2,955,566	+		CCNA_02795	0.48	-0.7
2,955,580	-		CCNA_02795	0.50	+2.6
2,955,612	-		CCNA_02795	0.55	-0.6
2,955,638	+		CCNA_02795	0.59	-0.6
2,955,643	+		CCNA_02795	0.59	-1.7
2,955,665	+		CCNA_02795	0.63	-0.5
2,955,665	+		CCNA_02795	0.63	+1.6
2,955,711	-		CCNA_02795	0.70	-0.3
2,955,712	-		CCNA_02795	0.70	-0.1
2,955,715	+		CCNA_02795	0.70	+2.0
2,955,715	+		CCNA_02795	0.70	-0.8
2,955,718	-				+3.6
2,955,720	+		CCNA_02795	0.71	+0.9
2,955,723	-		CCNA_02795	0.72	+0.9
2,955,725	+		CCNA_02795	0.72	-0.9
2,955,728	-		CCNA_02795	0.72	-0.5
2,955,733	-		CCNA_02795	0.73	+0.3
2,955,748	-		CCNA_02795	0.75	+0.4
2,955,766	+		CCNA_02795	0.78	-1.5
2,955,774	-		CCNA_02795	0.79	+0.5
2,955,781	+		CCNA_02795	0.80	+1.2
2,955,781	+		CCNA_02795	0.80	-0.1
2,955,781	+		CCNA_02795	0.80	+0.8
2,955,781	+		CCNA_02795	0.80	-0.8
2,955,781	+		CCNA_02795	0.80	-1.2
2,955,781	+		CCNA_02795	0.80	-0.2
2,955,781	+		CCNA_02795	0.80	-0.2
2,955,789	-		CCNA_02795	0.82	+1.2
2,955,789	-		CCNA_02795	0.82	+1.0
2,955,789	-		CCNA_02795	0.82	-0.1
2,955,789	-		CCNA_02795	0.82	-1.4
2,955,789	-		CCNA_02795	0.82	-0.9
2,955,789	-		CCNA_02795	0.82	+1.6
2,955,876	-				+1.9
2,955,897	+				+1.6
2,955,897	+				-0.3
2,955,905	-				+0.7
2,955,905	-				-1.5
2,955,905	-				-0.5
2,955,918	-				-0.2
2,955,971	+				-0.1
2,955,976	+				-0.4
2,955,979	-				+0.4
2,955,979	-				+1.4
2,956,033	+		CCNA_02796	0.44	+0.3
2,956,038	+		CCNA_02796	0.48	+0.1
2,956,041	-		CCNA_02796	0.50	+0.5
2,956,041	-		CCNA_02796	0.50	-0.1
2,956,060	+		CCNA_02796	0.64	+0.1
2,956,073	+		CCNA_02796	0.74	+1.0
2,956,081	-		CCNA_02796	0.80	+1.2
2,956,095	-				-0.6
2,956,095	-				-0.6
2,956,102	+				+1.6
2,956,110	+				+0.7
2,956,117	-				-0.1
2,956,153	-				-2.3
2,956,222	+				+0.7
2,956,224	-				-0.1
2,956,226	+				+0.3
2,956,226	+				-0.8
2,956,226	+				-0.7
2,956,234	-		CCNA_02797	0.12	+0.2
2,956,234	-		CCNA_02797	0.12	-0.1
2,956,234	-		CCNA_02797	0.12	+0.3
2,956,234	-		CCNA_02797	0.12	+0.8
2,956,239	-		CCNA_02797	0.17	-0.4
2,956,250	+		CCNA_02797	0.26	+0.0
2,956,279	+		CCNA_02797	0.50	-0.5
2,956,285	+		CCNA_02797	0.55	-0.7
2,956,287	-		CCNA_02797	0.57	+1.7
2,956,327	+				+0.8
2,956,335	-				-1.1
2,956,376	+				+1.2
2,956,384	-				+0.0
2,956,459	+				-0.7
2,956,467	-				+1.5
2,956,467	-				+0.2
2,956,467	-				-0.2
2,956,491	-		CCNA_02798	0.13	+0.8
2,956,501	+		CCNA_02798	0.14	-0.8
2,956,502	+		CCNA_02798	0.14	-0.2
2,956,505	-		CCNA_02798	0.15	+1.9
2,956,507	+		CCNA_02798	0.15	+1.0
2,956,508	+		CCNA_02798	0.15	+0.5
2,956,508	-		CCNA_02798	0.15	+2.7
2,956,508	-		CCNA_02798	0.15	+0.3
2,956,508	-		CCNA_02798	0.15	+0.8
2,956,510	-		CCNA_02798	0.15	+0.3
2,956,515	-		CCNA_02798	0.16	-1.3
2,956,544	+		CCNA_02798	0.20	-0.6
2,956,569	+		CCNA_02798	0.24	+0.6
2,956,590	-		CCNA_02798	0.27	-0.5
2,956,715	+		CCNA_02798	0.46	-1.9
2,956,741	+		CCNA_02798	0.50	+0.7
2,956,752	+		CCNA_02798	0.51	+1.2
2,956,760	-		CCNA_02798	0.52	+1.4
2,956,806	+		CCNA_02798	0.59	-1.0
2,956,807	+		CCNA_02798	0.59	+0.2
2,956,822	+		CCNA_02798	0.62	+1.5
2,956,822	+		CCNA_02798	0.62	-0.4
2,956,848	-		CCNA_02798	0.65	-1.6
2,956,850	+		CCNA_02798	0.66	-1.3
2,956,853	-		CCNA_02798	0.66	+1.6
2,956,866	+		CCNA_02798	0.68	-1.1
2,956,866	+		CCNA_02798	0.68	+1.1
2,956,866	+		CCNA_02798	0.68	+0.3
2,956,873	-		CCNA_02798	0.69	-0.1
2,956,874	-		CCNA_02798	0.69	-0.0
2,956,902	-		CCNA_02798	0.73	-0.5
2,956,912	-		CCNA_02798	0.75	-0.5
2,956,921	-		CCNA_02798	0.76	+0.5
2,956,945	+		CCNA_02798	0.80	+0.8
2,956,946	+		CCNA_02798	0.80	-0.1
2,956,946	+		CCNA_02798	0.80	+1.8
2,956,956	+		CCNA_02798	0.81	-0.0
2,956,957	-		CCNA_02798	0.82	+0.8
2,956,959	-		CCNA_02798	0.82	-0.8
2,956,959	-		CCNA_02798	0.82	-0.7
2,956,959	-		CCNA_02798	0.82	+1.5
2,956,959	-		CCNA_02798	0.82	-2.3
2,956,978	+		CCNA_02798	0.85	+0.5
2,956,978	+		CCNA_02798	0.85	-0.0
2,957,001	-		CCNA_02798	0.88	-0.3
2,957,060	+				+1.2
2,957,075	-				+0.4
2,957,075	-				+1.5
2,957,080	-				-0.6
2,957,102	-				+0.8
2,957,115	+				-0.5
2,957,146	+				-1.4
2,957,161	+				+1.0
2,957,195	+				+1.2
2,957,197	+				+1.2
2,957,203	-				-0.6
2,957,203	-				-2.7
2,957,327	-				+1.2
2,957,352	+				-0.2
2,957,360	-				+1.3
2,957,370	+				+0.4
2,957,389	+				+1.7
2,957,413	+				-0.8
2,957,421	-				-0.5
2,957,437	+				+3.7
2,957,463	+				-1.5
2,957,471	+		CCNA_02800	0.11	+0.2
2,957,471	+		CCNA_02800	0.11	+1.9
2,957,471	-		CCNA_02800	0.11	+1.0
2,957,479	-		CCNA_02800	0.13	+3.1
2,957,513	+		CCNA_02800	0.20	-0.1
2,957,525	-		CCNA_02800	0.23	-0.5
2,957,525	-		CCNA_02800	0.23	+1.0
2,957,532	-		CCNA_02800	0.24	+0.5
2,957,574	-		CCNA_02800	0.33	-1.6
2,957,575	+		CCNA_02800	0.33	+0.4
2,957,599	+		CCNA_02800	0.38	+0.3
2,957,605	+		CCNA_02800	0.39	+1.1
2,957,635	+		CCNA_02800	0.46	+1.7
2,957,643	-		CCNA_02800	0.47	+3.7
2,957,643	-		CCNA_02800	0.47	+0.2
2,957,645	+		CCNA_02800	0.48	+0.8
2,957,653	-		CCNA_02800	0.49	-0.3
2,957,653	-		CCNA_02800	0.49	+0.4
2,957,688	+		CCNA_02800	0.57	+3.2
2,957,694	-		CCNA_02800	0.58	+2.1
2,957,698	+		CCNA_02800	0.59	+1.4
2,957,755	+		CCNA_02800	0.71	+0.4
2,957,763	-		CCNA_02800	0.72	-1.3
2,957,763	-		CCNA_02800	0.72	-0.2
2,957,768	-		CCNA_02800	0.73	-0.8
2,957,781	-		CCNA_02800	0.76	+1.1
2,957,786	-		CCNA_02800	0.77	+0.8
2,957,807	+		CCNA_02800	0.81	-1.0
2,957,807	+		CCNA_02800	0.81	+0.6
2,957,807	+		CCNA_02800	0.81	+1.0
2,957,807	+		CCNA_02800	0.81	+0.7
2,957,807	+		CCNA_02800	0.81	-0.2
2,957,809	+		CCNA_02800	0.82	+0.0
2,957,815	-		CCNA_02800	0.83	+1.1
2,957,815	-		CCNA_02800	0.83	+0.1
2,957,815	-		CCNA_02800	0.83	+1.3
2,957,823	+		CCNA_02800	0.85	+0.6
2,957,865	-				+0.3
2,957,898	-				-0.2
2,957,898	-				+0.7
2,957,906	+				-1.3
2,957,929	-				+0.2
2,957,929	-				+2.9
2,957,946	-				-0.4
2,957,962	+				+0.9
2,958,016	-				-0.1
2,958,044	+				-1.1
2,958,053	+				+1.2
2,958,053	+				+2.7
2,958,061	-				+0.9
2,958,061	-				-1.0