Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02742

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,901,501	+				+2.1
2,901,541	+				+0.9
2,901,541	+				+0.8
2,901,541	+				+0.2
2,901,549	-				+0.9
2,901,549	-				+0.4
2,901,582	+				+1.7
2,901,582	+				+0.1
2,901,590	-				+0.9
2,901,591	-				-0.8
2,901,599	+				+0.8
2,901,667	+		CCNA_02741	0.11	-0.7
2,901,667	+		CCNA_02741	0.11	-0.5
2,901,675	-		CCNA_02741	0.12	+0.1
2,901,696	+		CCNA_02741	0.15	-1.0
2,901,761	+		CCNA_02741	0.24	+0.9
2,901,764	-		CCNA_02741	0.25	+1.3
2,901,769	-		CCNA_02741	0.25	+0.6
2,901,774	-		CCNA_02741	0.26	+3.5
2,901,790	+		CCNA_02741	0.28	+1.0
2,901,790	+		CCNA_02741	0.28	-1.2
2,901,798	+		CCNA_02741	0.30	+0.6
2,901,798	-		CCNA_02741	0.30	+1.7
2,901,798	-		CCNA_02741	0.30	-2.5
2,901,855	+		CCNA_02741	0.38	+0.1
2,901,882	+		CCNA_02741	0.42	-0.1
2,901,901	+		CCNA_02741	0.44	-0.1
2,901,909	-		CCNA_02741	0.46	-0.8
2,901,926	+		CCNA_02741	0.48	+0.9
2,901,926	+		CCNA_02741	0.48	-0.7
2,901,981	+		CCNA_02741	0.56	+0.8
2,901,981	+		CCNA_02741	0.56	-0.1
2,901,981	+		CCNA_02741	0.56	+1.4
2,902,020	-		CCNA_02741	0.62	+1.1
2,902,028	-		CCNA_02741	0.63	+1.4
2,902,144	+		CCNA_02741	0.80	+1.1
2,902,168	+		CCNA_02741	0.83	+1.4
2,902,168	+		CCNA_02741	0.83	-0.3
2,902,168	+		CCNA_02741	0.83	+1.4
2,902,215	+		CCNA_02741	0.90	+0.9
2,902,241	+				+2.5
2,902,241	+				+1.9
2,902,241	+				+2.4
2,902,241	+				+2.0
2,902,241	+				+2.3
2,902,249	-				-0.4
2,902,249	-				+1.2
2,902,384	-				+1.9
2,902,413	+				+1.6
2,902,421	-				-0.6
2,902,524	-				+2.4
2,902,540	+				+0.0
2,902,548	-				+1.5
2,902,552	+				-0.3
2,902,560	-				+1.7
2,902,564	+				+1.5
2,902,629	-		CCNA_02742	0.13	+1.6
2,902,631	-		CCNA_02742	0.13	+1.1
2,902,640	-		CCNA_02742	0.14	+1.1
2,902,642	+		CCNA_02742	0.14	+1.1
2,902,650	-		CCNA_02742	0.14	+1.3
2,902,650	-		CCNA_02742	0.14	-0.8
2,902,660	-		CCNA_02742	0.15	+2.2
2,902,705	+		CCNA_02742	0.19	-0.6
2,902,710	+				+2.2
2,902,712	+		CCNA_02742	0.19	+1.2
2,902,713	-		CCNA_02742	0.19	+0.7
2,902,713	-		CCNA_02742	0.19	-0.5
2,902,717	+		CCNA_02742	0.20	+0.5
2,902,717	+		CCNA_02742	0.20	+0.9
2,902,722	+		CCNA_02742	0.20	+1.8
2,902,725	-		CCNA_02742	0.20	+0.5
2,902,725	-		CCNA_02742	0.20	+2.5
2,902,725	-		CCNA_02742	0.20	+1.2
2,902,731	+		CCNA_02742	0.21	+1.1
2,902,739	-		CCNA_02742	0.21	+0.2
2,902,739	-		CCNA_02742	0.21	+1.2
2,902,761	+		CCNA_02742	0.23	+0.1
2,902,769	-		CCNA_02742	0.24	+2.5
2,902,769	-		CCNA_02742	0.24	+1.7
2,902,769	-		CCNA_02742	0.24	+2.1
2,902,774	+		CCNA_02742	0.24	+1.2
2,902,782	-		CCNA_02742	0.25	+1.2
2,902,793	-		CCNA_02742	0.26	+0.9
2,902,833	-		CCNA_02742	0.29	+2.1
2,902,856	-		CCNA_02742	0.31	+0.6
2,902,861	+		CCNA_02742	0.31	-1.4
2,902,868	+		CCNA_02742	0.32	+1.2
2,902,869	+		CCNA_02742	0.32	-0.2
2,902,869	-		CCNA_02742	0.32	+0.6
2,902,873	+		CCNA_02742	0.32	+1.2
2,902,882	-		CCNA_02742	0.33	-0.2
2,902,888	-		CCNA_02742	0.33	+1.1
2,902,969	-		CCNA_02742	0.40	-0.0
2,903,026	+		CCNA_02742	0.44	+0.7
2,903,064	+		CCNA_02742	0.47	-0.5
2,903,064	+		CCNA_02742	0.47	+0.1
2,903,064	+		CCNA_02742	0.47	-0.6
2,903,072	-		CCNA_02742	0.48	+0.0
2,903,072	-		CCNA_02742	0.48	+0.4
2,903,115	-		CCNA_02742	0.51	+1.1
2,903,120	+		CCNA_02742	0.51	-1.0
2,903,172	-		CCNA_02742	0.56	+2.0
2,903,210	+		CCNA_02742	0.58	-0.8
2,903,263	+		CCNA_02742	0.63	+0.6
2,903,270	+		CCNA_02742	0.63	-0.9
2,903,275	+		CCNA_02742	0.64	+1.2
2,903,280	+		CCNA_02742	0.64	+1.4
2,903,288	-		CCNA_02742	0.65	+2.5
2,903,298	-		CCNA_02742	0.65	+1.4
2,903,316	+		CCNA_02742	0.67	+1.2
2,903,324	-		CCNA_02742	0.67	+0.4
2,903,355	+		CCNA_02742	0.70	+0.1
2,903,376	+		CCNA_02742	0.72	+0.6
2,903,404	-		CCNA_02742	0.74	+1.6
2,903,436	-		CCNA_02742	0.76	+2.1
2,903,436	-		CCNA_02742	0.76	+2.0
2,903,485	-		CCNA_02742	0.80	+0.3
2,903,490	-		CCNA_02742	0.81	+0.2
2,903,493	-		CCNA_02742	0.81	+3.0
2,903,536	-		CCNA_02742	0.84	+2.0
2,903,575	+		CCNA_02742	0.87	+1.0
2,903,593	-		CCNA_02742	0.89	+0.1
2,903,615	-				+1.1
2,903,638	+				-0.5
2,903,654	+				+0.7
2,903,654	+				+0.7
2,903,746	+				+1.1
2,903,754	-		CCNA_03975	0.13	+1.6
2,903,799	-		CCNA_03975	0.42	+1.8
2,903,835	-		CCNA_03975	0.66	+2.7
2,903,835	-		CCNA_03975	0.66	+1.7
2,903,835	-		CCNA_03975	0.66	+1.6
2,903,850	+		CCNA_03975	0.76	+2.5
2,903,858	-		CCNA_03975	0.81	+2.3
2,903,865	+		CCNA_03975	0.86	-0.6
2,903,880	-				+1.7
2,903,938	+				+0.3
2,903,958	-				+1.0
2,903,983	-				+1.2
2,903,993	+				-0.8
2,904,008	+				+4.2
2,904,024	-				+1.1
2,904,024	-				-0.0
2,904,031	-				-0.4
2,904,039	+				-0.3
2,904,056	+				+1.4
2,904,056	+				+1.3
2,904,064	-				-0.7
2,904,075	-				+0.8
2,904,075	-				-0.7
2,904,075	-				+0.2
2,904,080	-				+1.4
2,904,081	+				+0.1
2,904,081	+				+1.0
2,904,081	+				-1.5
2,904,089	-				+1.5
2,904,089	-				+1.0
2,904,089	-				+1.2
2,904,107	+				-0.8
2,904,125	+				+0.5
2,904,125	+				+0.7
2,904,138	-		CCNA_02743	0.10	+0.2
2,904,147	+		CCNA_02743	0.11	+0.7
2,904,147	+		CCNA_02743	0.11	+0.6
2,904,147	+		CCNA_02743	0.11	+0.5
2,904,147	+		CCNA_02743	0.11	-0.4
2,904,147	+		CCNA_02743	0.11	+1.1
2,904,155	-		CCNA_02743	0.11	-0.7
2,904,155	-		CCNA_02743	0.11	+1.0
2,904,155	-		CCNA_02743	0.11	+0.7
2,904,155	-		CCNA_02743	0.11	+1.8
2,904,155	-		CCNA_02743	0.11	-0.2
2,904,155	-		CCNA_02743	0.11	-0.5
2,904,155	-		CCNA_02743	0.11	+0.3
2,904,155	-		CCNA_02743	0.11	+1.6
2,904,155	-		CCNA_02743	0.11	-0.9
2,904,155	-		CCNA_02743	0.11	-0.8
2,904,155	-		CCNA_02743	0.11	+0.8
2,904,181	-		CCNA_02743	0.12	+1.5
2,904,188	-		CCNA_02743	0.13	+1.1
2,904,203	+		CCNA_02743	0.13	-1.0
2,904,210	-		CCNA_02743	0.13	+0.3
2,904,239	-		CCNA_02743	0.15	+1.0
2,904,246	+		CCNA_02743	0.15	-0.4
2,904,246	+		CCNA_02743	0.15	+1.7
2,904,254	-		CCNA_02743	0.15	-0.2
2,904,254	-		CCNA_02743	0.15	-0.0
2,904,254	-		CCNA_02743	0.15	-1.2
2,904,255	-		CCNA_02743	0.15	-0.7
2,904,257	+		CCNA_02743	0.15	+1.2
2,904,265	-		CCNA_02743	0.16	+0.6
2,904,268	+		CCNA_02743	0.16	-0.5
2,904,268	+		CCNA_02743	0.16	+0.2
2,904,276	-		CCNA_02743	0.16	+0.1
2,904,276	-		CCNA_02743	0.16	+1.4
2,904,276	-		CCNA_02743	0.16	-1.3
2,904,276	-		CCNA_02743	0.16	+0.4
2,904,276	-		CCNA_02743	0.16	+0.5
2,904,276	-		CCNA_02743	0.16	+1.5
2,904,276	-		CCNA_02743	0.16	+0.0
2,904,304	+		CCNA_02743	0.17	+1.2
2,904,311	-		CCNA_02743	0.18	-0.3
2,904,342	-		CCNA_02743	0.19	+1.9
2,904,362	+		CCNA_02743	0.20	+2.5
2,904,369	+		CCNA_02743	0.20	+0.5
2,904,369	+		CCNA_02743	0.20	-0.0
2,904,369	+		CCNA_02743	0.20	-1.8
2,904,370	+		CCNA_02743	0.20	+2.0
2,904,377	-		CCNA_02743	0.20	+0.4
2,904,378	-		CCNA_02743	0.20	+0.1
2,904,404	+		CCNA_02743	0.22	-0.1
2,904,418	+		CCNA_02743	0.22	+0.8
2,904,418	+		CCNA_02743	0.22	-0.2
2,904,418	+		CCNA_02743	0.22	-0.0
2,904,418	+		CCNA_02743	0.22	-0.5
2,904,418	+		CCNA_02743	0.22	-0.3
2,904,418	+		CCNA_02743	0.22	-0.3
2,904,418	+		CCNA_02743	0.22	+0.1
2,904,418	+		CCNA_02743	0.22	-0.0
2,904,418	+		CCNA_02743	0.22	+1.0
2,904,426	-		CCNA_02743	0.22	+1.5
2,904,426	-		CCNA_02743	0.22	+0.3
2,904,426	-		CCNA_02743	0.22	+2.0
2,904,426	-		CCNA_02743	0.22	+1.2
2,904,427	+		CCNA_02743	0.22	+0.8
2,904,427	+		CCNA_02743	0.22	+0.7
2,904,444	+		CCNA_02743	0.23	+0.6
2,904,477	+		CCNA_02743	0.25	+0.9
2,904,485	-		CCNA_02743	0.25	+0.5
2,904,485	-		CCNA_02743	0.25	+1.8
2,904,504	+		CCNA_02743	0.26	+0.5
2,904,509	+		CCNA_02743	0.26	+0.3
2,904,517	-		CCNA_02743	0.26	-0.5
2,904,517	-		CCNA_02743	0.26	+0.8
2,904,564	-		CCNA_02743	0.28	+1.3
2,904,566	+		CCNA_02743	0.28	+4.4
2,904,614	-		CCNA_02743	0.30	+0.9
2,904,639	-		CCNA_02743	0.31	-0.4
2,904,679	-		CCNA_02743	0.33	+0.1
2,904,686	-		CCNA_02743	0.33	+2.8
2,904,686	-		CCNA_02743	0.33	+0.2
2,904,700	+		CCNA_02743	0.34	+2.0
2,904,705	+		CCNA_02743	0.34	+2.4
2,904,734	-		CCNA_02743	0.35	+0.9