Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02672

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,823,677	+		CCNA_02670	0.65	-1.2
2,823,680	-		CCNA_02670	0.65	+0.8
2,823,683	+		CCNA_02670	0.65	+0.1
2,823,685	-		CCNA_02670	0.65	+0.5
2,823,699	-		CCNA_02670	0.66	+0.3
2,823,708	+		CCNA_02670	0.67	+0.6
2,823,752	+		CCNA_02670	0.70	-1.1
2,823,752	+		CCNA_02670	0.70	+1.2
2,823,764	-		CCNA_02670	0.70	+2.4
2,823,798	-		CCNA_02670	0.73	+1.1
2,823,871	+		CCNA_02670	0.77	-0.0
2,823,877	+		CCNA_02670	0.77	-1.0
2,823,883	+		CCNA_02670	0.78	+0.8
2,823,883	+		CCNA_02670	0.78	+0.5
2,823,885	-		CCNA_02670	0.78	+0.0
2,823,885	-		CCNA_02670	0.78	-0.4
2,823,891	-		CCNA_02670	0.78	-1.4
2,823,891	-		CCNA_02670	0.78	+1.4
2,823,900	+		CCNA_02670	0.79	-1.3
2,823,908	-		CCNA_02670	0.79	+0.6
2,823,908	-		CCNA_02670	0.79	+0.8
2,823,964	+		CCNA_02670	0.83	+2.1
2,823,964	+		CCNA_02670	0.83	-1.1
2,823,965	+		CCNA_02670	0.83	-0.5
2,823,972	-		CCNA_02670	0.83	+0.2
2,823,972	-		CCNA_02670	0.83	+1.4
2,823,983	-		CCNA_02670	0.84	-0.1
2,823,983	-		CCNA_02670	0.84	+0.9
2,823,983	-		CCNA_02670	0.84	+0.2
2,823,988	-		CCNA_02670	0.84	+0.3
2,823,988	-		CCNA_02670	0.84	+1.2
2,824,015	-		CCNA_02670	0.86	+0.3
2,824,017	+		CCNA_02670	0.86	+3.6
2,824,017	+		CCNA_02670	0.86	+3.3
2,824,017	+		CCNA_02670	0.86	+3.7
2,824,017	+		CCNA_02670	0.86	+3.0
2,824,025	-		CCNA_02670	0.87	+0.1
2,824,025	-		CCNA_02670	0.87	-0.5
2,824,025	-		CCNA_02670	0.87	+1.4
2,824,065	+		CCNA_02670	0.89	+1.2
2,824,071	+		CCNA_02670	0.89	-0.2
2,824,072	-		CCNA_02670	0.90	+0.9
2,824,073	-		CCNA_02670	0.90	+1.3
2,824,079	-				+1.1
2,824,112	+				+0.9
2,824,119	-				+1.8
2,824,119	-				+2.0
2,824,119	-				+2.2
2,824,120	-				+1.5
2,824,134	+				-0.3
2,824,134	-				+3.2
2,824,149	+				+0.6
2,824,149	+				-1.9
2,824,149	+				+1.2
2,824,168	+				-1.6
2,824,176	-				+3.4
2,824,176	-				+2.6
2,824,200	-				+3.0
2,824,219	+				-0.7
2,824,275	-		CCNA_03972	0.69	+2.5
2,824,277	+		CCNA_03972	0.71	-1.9
2,824,279	+		CCNA_03972	0.73	+0.5
2,824,300	-				+2.6
2,824,365	-				-1.8
2,824,381	-				+0.4
2,824,393	+		CCNA_02671	0.11	-0.6
2,824,393	+		CCNA_02671	0.11	-0.4
2,824,500	-		CCNA_02671	0.77	+0.8
2,824,500	-		CCNA_02671	0.77	-0.9
2,824,500	-		CCNA_02671	0.77	-0.1
2,824,507	-		CCNA_02671	0.81	-0.3
2,824,565	+				-0.5
2,824,565	+				-0.7
2,824,587	-				+0.4
2,824,592	-				+0.3
2,824,619	+				-0.0
2,824,628	-				+1.0
2,824,634	+				+4.0
2,824,639	+				-0.3
2,824,654	+				+0.9
2,824,662	-				+1.0
2,824,662	-				+0.7
2,824,690	+				+0.7
2,824,698	-				+1.1
2,824,703	-				-1.4
2,824,730	+		CCNA_02672	0.16	+0.6
2,824,730	+		CCNA_02672	0.16	+1.1
2,824,738	-		CCNA_02672	0.17	-0.1
2,824,738	-		CCNA_02672	0.17	+0.4
2,824,738	-		CCNA_02672	0.17	+0.7
2,824,749	-		CCNA_02672	0.20	+0.8
2,824,749	-		CCNA_02672	0.20	+1.2
2,824,749	-		CCNA_02672	0.20	+1.6
2,824,767	-		CCNA_02672	0.24	+0.8
2,824,813	-		CCNA_02672	0.34	+2.2
2,824,825	-		CCNA_02672	0.36	+1.0
2,824,870	-		CCNA_02672	0.46	+1.6
2,824,884	-		CCNA_02672	0.49	+3.1
2,824,891	-		CCNA_02672	0.50	-0.2
2,824,919	+		CCNA_02672	0.56	+0.7
2,824,919	+		CCNA_02672	0.56	-1.1
2,824,919	+		CCNA_02672	0.56	-1.5
2,824,927	-		CCNA_02672	0.58	+1.4
2,824,927	-		CCNA_02672	0.58	+0.8
2,824,927	-		CCNA_02672	0.58	+1.5
2,824,927	-		CCNA_02672	0.58	+1.4
2,824,927	-		CCNA_02672	0.58	+0.0
2,824,946	+		CCNA_02672	0.62	-1.3
2,824,983	+		CCNA_02672	0.70	+0.7
2,824,983	+		CCNA_02672	0.70	+1.8
2,825,001	+		CCNA_02672	0.74	-1.4
2,825,002	-		CCNA_02672	0.74	+1.1
2,825,006	+		CCNA_02672	0.75	+0.4
2,825,011	+		CCNA_02672	0.76	+0.6
2,825,011	+		CCNA_02672	0.76	-2.2
2,825,011	+		CCNA_02672	0.76	+1.6
2,825,011	+		CCNA_02672	0.76	+0.6
2,825,011	+		CCNA_02672	0.76	+0.4
2,825,011	+		CCNA_02672	0.76	+1.6
2,825,019	-		CCNA_02672	0.78	+1.0
2,825,019	-		CCNA_02672	0.78	-0.6
2,825,019	-		CCNA_02672	0.78	+1.2
2,825,019	-		CCNA_02672	0.78	-0.2
2,825,019	-		CCNA_02672	0.78	+0.8
2,825,019	-		CCNA_02672	0.78	+0.2
2,825,019	-		CCNA_02672	0.78	+2.6
2,825,019	-		CCNA_02672	0.78	+2.1
2,825,019	-		CCNA_02672	0.78	-0.3
2,825,019	-		CCNA_02672	0.78	-1.2
2,825,019	-		CCNA_02672	0.78	+1.6
2,825,019	-		CCNA_02672	0.78	+0.4
2,825,045	-		CCNA_02672	0.83	+0.8
2,825,046	-		CCNA_02672	0.84	+1.0
2,825,055	-		CCNA_02672	0.86	-0.8
2,825,144	-				+0.7
2,825,171	+				+0.1
2,825,179	-				+0.6
2,825,192	+				+0.4
2,825,197	+				+2.0
2,825,200	-				-0.2
2,825,204	-				+2.1
2,825,225	+				+0.7
2,825,243	-				-1.4
2,825,243	-				-0.6
2,825,303	+				+0.3
2,825,305	+				-0.3
2,825,306	-				-0.5
2,825,313	-				-1.0
2,825,343	+				-0.3
2,825,343	+				-0.2
2,825,343	+				+1.5
2,825,343	+				-0.8
2,825,351	-				+1.4
2,825,351	-				+0.2
2,825,351	-				+0.9
2,825,351	-				-0.9
2,825,351	-				+0.9
2,825,358	+				+1.8
2,825,366	-				+1.1
2,825,366	-				+1.0
2,825,388	+				+1.3
2,825,401	+				-0.2
2,825,472	-				+1.2
2,825,487	-				+0.2
2,825,505	+				-1.2
2,825,513	-				-1.3
2,825,518	+				-1.5
2,825,528	+				+0.5
2,825,550	-				-0.2
2,825,555	-				+0.7
2,825,629	+				-1.8
2,825,634	+				+0.4
2,825,663	-		CCNA_02673	0.10	+1.2
2,825,693	+		CCNA_02673	0.11	+0.0
2,825,715	+		CCNA_02673	0.12	+2.4
2,825,723	-		CCNA_02673	0.12	+1.4
2,825,757	+		CCNA_02673	0.14	+0.6
2,825,799	+		CCNA_02673	0.15	+0.6
2,825,814	+		CCNA_02673	0.16	+0.3
2,825,834	-		CCNA_02673	0.16	+1.4
2,825,919	+		CCNA_02673	0.19	+0.7
2,825,919	+		CCNA_02673	0.19	+0.8
2,825,919	+		CCNA_02673	0.19	+1.6
2,825,927	-		CCNA_02673	0.19	+2.8
2,825,949	+		CCNA_02673	0.20	+2.1
2,825,958	+		CCNA_02673	0.21	-0.5
2,825,958	+		CCNA_02673	0.21	+2.1
2,825,969	+		CCNA_02673	0.21	+1.2
2,825,980	+		CCNA_02673	0.21	-0.8
2,825,980	+		CCNA_02673	0.21	+1.2
2,825,980	+		CCNA_02673	0.21	+1.6
2,825,980	+		CCNA_02673	0.21	+1.6
2,825,980	+		CCNA_02673	0.21	+1.3
2,825,988	-		CCNA_02673	0.22	+0.7
2,826,003	+		CCNA_02673	0.22	-0.3
2,826,005	-		CCNA_02673	0.22	+1.9
2,826,018	+		CCNA_02673	0.23	+0.1
2,826,042	+		CCNA_02673	0.23	-0.6
2,826,042	+		CCNA_02673	0.23	+3.4
2,826,086	+		CCNA_02673	0.25	+0.8
2,826,094	-		CCNA_02673	0.25	+1.2
2,826,094	-		CCNA_02673	0.25	-0.5
2,826,094	-		CCNA_02673	0.25	+1.5
2,826,096	+		CCNA_02673	0.25	+0.8
2,826,096	+		CCNA_02673	0.25	+0.3