Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02661

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,811,899	+		CCNA_02659	0.37	+0.2
2,811,899	+		CCNA_02659	0.37	+3.1
2,811,907	-		CCNA_02659	0.40	-0.6
2,811,907	-		CCNA_02659	0.40	-1.4
2,811,907	-		CCNA_02659	0.40	-0.8
2,811,907	-		CCNA_02659	0.40	-0.2
2,811,917	-		CCNA_02659	0.42	-0.5
2,811,932	+		CCNA_02659	0.47	+3.7
2,811,956	+		CCNA_02659	0.53	+2.1
2,811,961	+		CCNA_02659	0.55	+1.4
2,811,969	-		CCNA_02659	0.57	+0.5
2,811,969	-		CCNA_02659	0.57	-1.5
2,811,969	-		CCNA_02659	0.57	+0.4
2,812,001	-		CCNA_02659	0.66	+0.6
2,812,016	+		CCNA_02659	0.70	+1.0
2,812,019	-		CCNA_02659	0.71	+2.0
2,812,028	+		CCNA_02659	0.73	+3.1
2,812,038	+		CCNA_02659	0.76	-0.8
2,812,049	+		CCNA_02659	0.79	+0.7
2,812,050	+		CCNA_02659	0.79	+0.1
2,812,063	+		CCNA_02659	0.83	+0.7
2,812,068	-		CCNA_02659	0.84	-0.7
2,812,086	+		CCNA_02659	0.89	+0.0
2,812,093	+				+0.6
2,812,093	+				+1.1
2,812,093	+				+0.7
2,812,101	-				+0.4
2,812,156	-				+0.1
2,812,156	-				+1.6
2,812,167	-				-0.1
2,812,192	-				-0.0
2,812,209	+				-0.7
2,812,209	+				-1.3
2,812,271	+		CCNA_02660	0.15	-1.1
2,812,279	-		CCNA_02660	0.17	-1.3
2,812,286	+		CCNA_02660	0.18	-0.7
2,812,294	-		CCNA_02660	0.19	-0.6
2,812,294	-		CCNA_02660	0.19	-0.7
2,812,316	-		CCNA_02660	0.23	+1.3
2,812,321	-		CCNA_02660	0.24	-1.0
2,812,324	+		CCNA_02660	0.24	-1.3
2,812,326	+		CCNA_02660	0.24	+0.0
2,812,340	-		CCNA_02660	0.27	-0.0
2,812,340	-		CCNA_02660	0.27	+0.3
2,812,340	-		CCNA_02660	0.27	+1.0
2,812,340	-		CCNA_02660	0.27	-0.1
2,812,340	-		CCNA_02660	0.27	-0.9
2,812,364	-		CCNA_02660	0.31	-0.7
2,812,374	-		CCNA_02660	0.32	-1.9
2,812,393	+		CCNA_02660	0.35	-0.2
2,812,393	+		CCNA_02660	0.35	+1.9
2,812,393	+		CCNA_02660	0.35	+0.8
2,812,393	+		CCNA_02660	0.35	+0.9
2,812,401	-		CCNA_02660	0.37	+0.9
2,812,401	-		CCNA_02660	0.37	-0.3
2,812,519	+		CCNA_02660	0.56	-0.0
2,812,524	+		CCNA_02660	0.57	+1.5
2,812,524	+		CCNA_02660	0.57	-0.0
2,812,532	-		CCNA_02660	0.58	+0.5
2,812,532	-		CCNA_02660	0.58	-0.9
2,812,534	-		CCNA_02660	0.58	-0.9
2,812,545	+		CCNA_02660	0.60	+0.3
2,812,547	+		CCNA_02660	0.60	+1.0
2,812,547	+		CCNA_02660	0.60	+0.8
2,812,547	+		CCNA_02660	0.60	+1.7
2,812,547	+		CCNA_02660	0.60	+0.8
2,812,555	-		CCNA_02660	0.62	+0.3
2,812,610	+		CCNA_02660	0.71	+0.7
2,812,677	+		CCNA_02660	0.81	+0.1
2,812,685	-		CCNA_02660	0.83	-1.3
2,812,707	-		CCNA_02660	0.86	-0.8
2,812,751	-				+0.4
2,812,751	-				-1.7
2,812,787	+				+0.1
2,812,850	-				+1.9
2,812,857	+				-1.9
2,812,857	-				+0.2
2,812,867	-				-0.2
2,812,963	+				+0.9
2,812,963	+				+0.0
2,812,963	+				-0.2
2,812,978	+				+3.2
2,812,996	+				+0.8
2,813,026	-				-0.6
2,813,049	+				-0.6
2,813,067	-				+0.6
2,813,067	-				+0.9
2,813,075	-				+0.2
2,813,194	+		CCNA_02661	0.12	+0.3
2,813,196	-		CCNA_02661	0.12	+1.3
2,813,227	+		CCNA_02661	0.13	+0.1
2,813,318	+		CCNA_02661	0.16	+1.8
2,813,323	+		CCNA_02661	0.16	+1.3
2,813,333	-		CCNA_02661	0.17	+0.3
2,813,350	-		CCNA_02661	0.17	-0.6
2,813,381	-		CCNA_02661	0.18	-0.2
2,813,416	-		CCNA_02661	0.20	-0.1
2,813,432	+		CCNA_02661	0.20	+1.0
2,813,440	-		CCNA_02661	0.21	-0.3
2,813,445	+		CCNA_02661	0.21	+2.0
2,813,456	+		CCNA_02661	0.21	+0.5
2,813,487	-		CCNA_02661	0.22	+0.5
2,813,513	+		CCNA_02661	0.23	+2.5
2,813,513	+		CCNA_02661	0.23	-0.4
2,813,513	+		CCNA_02661	0.23	+0.8
2,813,513	+		CCNA_02661	0.23	-0.6
2,813,513	+		CCNA_02661	0.23	+2.1
2,813,521	-		CCNA_02661	0.23	+0.5
2,813,521	-		CCNA_02661	0.23	+0.5
2,813,521	-		CCNA_02661	0.23	+0.7
2,813,521	-		CCNA_02661	0.23	-0.1
2,813,521	-		CCNA_02661	0.23	+1.0
2,813,521	-		CCNA_02661	0.23	+0.5
2,813,566	-		CCNA_02661	0.25	-0.2
2,813,578	+		CCNA_02661	0.25	+0.9
2,813,598	-		CCNA_02661	0.26	+1.0
2,813,611	+		CCNA_02661	0.27	+1.2
2,813,635	+		CCNA_02661	0.28	-0.6
2,813,635	+		CCNA_02661	0.28	+0.5
2,813,643	-		CCNA_02661	0.28	-0.7
2,813,643	-		CCNA_02661	0.28	+1.3
2,813,643	-		CCNA_02661	0.28	+1.5
2,813,649	-		CCNA_02661	0.28	-0.6
2,813,681	-		CCNA_02661	0.29	-0.6
2,813,756	+		CCNA_02661	0.32	+0.8
2,813,777	+		CCNA_02661	0.33	+0.0
2,813,777	+		CCNA_02661	0.33	-0.4
2,813,777	-		CCNA_02661	0.33	+0.3
2,813,777	-		CCNA_02661	0.33	+0.2
2,813,779	+		CCNA_02661	0.33	-0.2
2,813,817	+		CCNA_02661	0.34	+1.0
2,813,817	+		CCNA_02661	0.34	+0.6
2,813,825	+		CCNA_02661	0.34	+2.1
2,813,827	+		CCNA_02661	0.34	+0.5
2,813,848	+		CCNA_02661	0.35	-0.2
2,813,849	+		CCNA_02661	0.35	-0.2
2,813,864	-		CCNA_02661	0.36	-0.7
2,813,871	-		CCNA_02661	0.36	+0.0
2,813,893	+		CCNA_02661	0.37	+0.0
2,813,896	-		CCNA_02661	0.37	+0.5
2,814,011	+		CCNA_02661	0.41	-1.1
2,814,084	+		CCNA_02661	0.44	+0.9
2,814,126	+		CCNA_02661	0.45	+3.6
2,814,150	+		CCNA_02661	0.46	+1.1
2,814,166	+		CCNA_02661	0.46	+0.1
2,814,182	-		CCNA_02661	0.47	-0.7
2,814,264	+		CCNA_02661	0.50	+0.4
2,814,289	+		CCNA_02661	0.51	+1.5
2,814,297	-		CCNA_02661	0.51	+1.3
2,814,322	+		CCNA_02661	0.52	+1.3
2,814,324	-		CCNA_02661	0.52	+0.5
2,814,335	-		CCNA_02661	0.52	+1.2
2,814,360	+		CCNA_02661	0.53	+1.8
2,814,393	+		CCNA_02661	0.55	-0.1
2,814,401	-		CCNA_02661	0.55	-2.2
2,814,439	+		CCNA_02661	0.56	+0.2
2,814,442	-		CCNA_02661	0.56	-1.6
2,814,451	+		CCNA_02661	0.57	+2.2
2,814,469	-		CCNA_02661	0.57	+0.8
2,814,526	+		CCNA_02661	0.59	+0.5
2,814,582	-		CCNA_02661	0.61	+0.5
2,814,602	+		CCNA_02661	0.62	+0.4
2,814,602	+		CCNA_02661	0.62	-0.1
2,814,610	-		CCNA_02661	0.62	+1.3
2,814,637	+		CCNA_02661	0.63	+0.2
2,814,680	-		CCNA_02661	0.65	+0.5
2,814,741	+				+2.8
2,814,751	-		CCNA_02661	0.67	+0.2
2,814,771	-		CCNA_02661	0.68	+0.3
2,814,799	+		CCNA_02661	0.69	-0.1
2,814,799	+		CCNA_02661	0.69	-0.2
2,814,807	-		CCNA_02661	0.69	+1.6
2,814,807	-		CCNA_02661	0.69	-0.5
2,814,825	-		CCNA_02661	0.70	+0.4
2,814,844	-		CCNA_02661	0.71	+0.2
2,814,844	-		CCNA_02661	0.71	+1.2
2,814,869	+		CCNA_02661	0.71	+0.8
2,814,901	+		CCNA_02661	0.73	-0.4
2,814,901	+		CCNA_02661	0.73	+0.9
2,814,942	-		CCNA_02661	0.74	+1.3
2,814,954	+		CCNA_02661	0.75	+0.5
2,814,988	-		CCNA_02661	0.76	+1.5
2,814,997	+		CCNA_02661	0.76	+0.3
2,814,997	+		CCNA_02661	0.76	-0.2
2,815,003	+		CCNA_02661	0.76	-0.1
2,815,005	-		CCNA_02661	0.76	-0.1
2,815,005	-		CCNA_02661	0.76	-1.1
2,815,005	-		CCNA_02661	0.76	+0.7
2,815,005	-		CCNA_02661	0.76	+0.2
2,815,030	+		CCNA_02661	0.77	+0.5
2,815,038	-		CCNA_02661	0.77	+0.7
2,815,069	-		CCNA_02661	0.79	+0.5
2,815,103	-		CCNA_02661	0.80	-0.7
2,815,108	+		CCNA_02661	0.80	-0.5
2,815,141	+		CCNA_02661	0.81	+0.1
2,815,204	+		CCNA_02661	0.83	+0.2
2,815,253	+		CCNA_02661	0.85	+1.5
2,815,258	+		CCNA_02661	0.85	+1.4
2,815,266	-		CCNA_02661	0.86	+0.5
2,815,266	-		CCNA_02661	0.86	-1.3
2,815,272	+		CCNA_02661	0.86	+1.5
2,815,322	+		CCNA_02661	0.88	+1.2
2,815,367	-		CCNA_02661	0.89	+0.9
2,815,376	+		CCNA_02661	0.90	+3.8
2,815,376	+		CCNA_02661	0.90	+0.9
2,815,376	+		CCNA_02661	0.90	+1.1
2,815,376	+		CCNA_02661	0.90	+0.9
2,815,376	+		CCNA_02661	0.90	-0.9
2,815,384	-		CCNA_02661	0.90	+1.8
2,815,384	-		CCNA_02661	0.90	+0.6
2,815,384	-		CCNA_02661	0.90	-1.3
2,815,386	+		CCNA_02661	0.90	+1.5
2,815,386	+		CCNA_02661	0.90	+0.3
2,815,393	-				-1.3
2,815,394	-				-0.6
2,815,394	-				-0.3
2,815,412	+				+2.7
2,815,412	+				+0.7
2,815,418	+				+1.6
2,815,458	+				+2.4
2,815,458	+				+2.9
2,815,481	+				+1.5
2,815,501	+				+1.5
2,815,522	-				+0.5
2,815,567	+				+2.4
2,815,567	+				+2.0
2,815,572	+				+1.4
2,815,575	-				+2.5
2,815,575	-				-0.1
2,815,591	+				+1.3
2,815,599	-				+0.3
2,815,609	+				+2.0
2,815,609	+				+2.4
2,815,617	-				-0.5
2,815,617	-				+1.0
2,815,623	+				+1.7
2,815,623	-				-1.0
2,815,647	-				+1.0
2,815,647	-				+0.2
2,815,654	-				+1.9
2,815,695	+				-0.0
2,815,726	-				-1.4
2,815,857	+				+0.4
2,815,868	+				-0.1
2,815,868	+				+2.4
2,815,875	+				+1.5
2,815,875	+				+0.1
2,815,875	+				+0.7
2,815,947	-		CCNA_02662	0.14	+1.0
2,815,947	-		CCNA_02662	0.14	+2.5
2,815,974	+		CCNA_02662	0.16	+0.1
2,815,974	+		CCNA_02662	0.16	-0.2
2,815,979	+		CCNA_02662	0.16	+0.4
2,815,979	+		CCNA_02662	0.16	+0.5
2,815,981	-		CCNA_02662	0.16	-0.0
2,815,982	-		CCNA_02662	0.16	+1.4
2,815,987	-		CCNA_02662	0.16	-0.5
2,815,987	-		CCNA_02662	0.16	+0.7
2,815,987	-		CCNA_02662	0.16	+1.4
2,816,024	+		CCNA_02662	0.19	-0.2
2,816,044	+		CCNA_02662	0.20	-1.0
2,816,052	-		CCNA_02662	0.20	+0.8
2,816,081	+		CCNA_02662	0.22	-0.4
2,816,091	+		CCNA_02662	0.23	+2.8
2,816,092	-		CCNA_02662	0.23	+1.0
2,816,132	+		CCNA_02662	0.25	-1.0
2,816,132	+		CCNA_02662	0.25	-1.4
2,816,140	-		CCNA_02662	0.26	+0.6
2,816,209	+		CCNA_02662	0.30	-2.1
2,816,226	+		CCNA_02662	0.31	+0.2
2,816,286	-		CCNA_02662	0.35	-0.9
2,816,383	+		CCNA_02662	0.41	-1.4
2,816,388	+		CCNA_02662	0.41	-0.2
2,816,391	-		CCNA_02662	0.42	+1.5
2,816,419	-		CCNA_02662	0.43	+2.1
2,816,496	+		CCNA_02662	0.48	-0.4
2,816,512	-		CCNA_02662	0.49	-1.1
2,816,529	-		CCNA_02662	0.50	+1.0