Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02558

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,703,665	+		CCNA_02556	0.88	+0.5
2,703,668	-		CCNA_02556	0.89	-0.2
2,703,690	+				+0.2
2,703,704	+				+0.1
2,703,704	+				-0.5
2,703,704	+				+0.3
2,703,704	+				-0.4
2,703,704	+				+1.0
2,703,712	-				-0.1
2,703,712	-				+1.0
2,703,712	-				-0.7
2,703,712	-				+0.2
2,703,712	-				+1.0
2,703,712	-				-0.6
2,703,743	+				+0.8
2,703,744	-				+0.8
2,703,760	+				+0.0
2,703,764	+				-0.0
2,703,775	+				-1.3
2,703,804	-				+0.2
2,703,804	-				-1.4
2,703,806	+				-2.3
2,703,814	-				+1.0
2,703,857	+				+1.4
2,703,865	-				-0.4
2,703,865	-				-1.3
2,703,865	-				-0.5
2,703,865	-				-0.6
2,703,865	-				+0.0
2,703,915	+				+1.1
2,703,938	-		CCNA_02557	0.11	+0.3
2,703,969	-		CCNA_02557	0.15	+1.1
2,704,004	+		CCNA_02557	0.19	+1.1
2,704,006	+		CCNA_02557	0.20	+0.8
2,704,011	+		CCNA_02557	0.20	-0.5
2,704,011	+		CCNA_02557	0.20	-0.8
2,704,124	-		CCNA_02557	0.34	-0.7
2,704,142	-		CCNA_02557	0.37	+0.8
2,704,152	+		CCNA_02557	0.38	-0.5
2,704,152	-		CCNA_02557	0.38	-0.2
2,704,177	+		CCNA_02557	0.41	-0.5
2,704,183	-		CCNA_02557	0.42	-0.3
2,704,236	+		CCNA_02557	0.49	+2.1
2,704,266	+		CCNA_02557	0.52	+2.5
2,704,383	+		CCNA_02557	0.67	+1.0
2,704,445	+		CCNA_02557	0.75	+2.8
2,704,461	+		CCNA_02557	0.77	-0.2
2,704,461	+		CCNA_02557	0.77	-0.0
2,704,469	-		CCNA_02557	0.78	-0.4
2,704,483	+		CCNA_02557	0.80	+0.9
2,704,491	-		CCNA_02557	0.81	-0.8
2,704,491	-		CCNA_02557	0.81	+0.0
2,704,531	+		CCNA_02557	0.86	-0.7
2,704,577	+				+0.9
2,704,587	+				+0.0
2,704,643	+				+0.6
2,704,643	+				+0.2
2,704,647	-				+0.5
2,704,656	-				-0.4
2,704,817	-		CCNA_02558	0.10	-1.3
2,704,819	+		CCNA_02558	0.10	-1.0
2,704,852	-		CCNA_02558	0.13	-0.5
2,704,859	+		CCNA_02558	0.13	-0.8
2,704,864	+		CCNA_02558	0.13	-0.0
2,704,872	-		CCNA_02558	0.14	+0.4
2,704,872	-		CCNA_02558	0.14	-1.2
2,704,896	-		CCNA_02558	0.15	+1.1
2,704,903	+		CCNA_02558	0.16	-1.3
2,704,903	-		CCNA_02558	0.16	-1.5
2,704,922	-		CCNA_02558	0.17	+1.1
2,704,947	-		CCNA_02558	0.19	-1.0
2,704,949	+		CCNA_02558	0.19	+0.9
2,704,959	+		CCNA_02558	0.19	+0.2
2,704,959	+		CCNA_02558	0.19	+1.2
2,704,959	+		CCNA_02558	0.19	+0.1
2,704,967	-		CCNA_02558	0.20	+0.4
2,704,967	-		CCNA_02558	0.20	-1.1
2,704,967	-		CCNA_02558	0.20	-1.9
2,704,981	+		CCNA_02558	0.21	-0.4
2,705,048	+		CCNA_02558	0.25	+0.0
2,705,077	+		CCNA_02558	0.27	+1.7
2,705,097	+		CCNA_02558	0.28	+0.1
2,705,101	+		CCNA_02558	0.28	+1.4
2,705,109	-		CCNA_02558	0.29	+3.1
2,705,111	+		CCNA_02558	0.29	+2.8
2,705,138	-		CCNA_02558	0.31	-0.6
2,705,154	-		CCNA_02558	0.32	-1.5
2,705,175	-		CCNA_02558	0.33	+0.6
2,705,190	-		CCNA_02558	0.34	+3.1
2,705,192	+		CCNA_02558	0.34	-0.3
2,705,200	+		CCNA_02558	0.34	+1.8
2,705,206	-		CCNA_02558	0.35	+0.7
2,705,211	-		CCNA_02558	0.35	+0.2
2,705,213	-		CCNA_02558	0.35	+0.4
2,705,239	+		CCNA_02558	0.37	-2.1
2,705,252	-		CCNA_02558	0.38	+0.9
2,705,338	+		CCNA_02558	0.43	-0.2
2,705,371	+		CCNA_02558	0.45	+0.8
2,705,375	+		CCNA_02558	0.45	+0.3
2,705,379	-		CCNA_02558	0.46	+1.1
2,705,379	-		CCNA_02558	0.46	+1.1
2,705,409	+		CCNA_02558	0.48	+1.0
2,705,419	-		CCNA_02558	0.48	-0.7
2,705,427	+		CCNA_02558	0.49	-1.7
2,705,427	-		CCNA_02558	0.49	-0.6
2,705,435	-		CCNA_02558	0.49	-0.9
2,705,447	-		CCNA_02558	0.50	+0.8
2,705,464	+		CCNA_02558	0.51	-1.1
2,705,464	+		CCNA_02558	0.51	+1.0
2,705,464	+		CCNA_02558	0.51	+0.4
2,705,515	+		CCNA_02558	0.54	-1.0
2,705,531	+		CCNA_02558	0.55	+1.4
2,705,531	+		CCNA_02558	0.55	-0.1
2,705,531	+		CCNA_02558	0.55	+0.5
2,705,531	+		CCNA_02558	0.55	-0.1
2,705,531	+		CCNA_02558	0.55	-1.1
2,705,531	+		CCNA_02558	0.55	-1.6
2,705,531	+		CCNA_02558	0.55	-0.5
2,705,531	+		CCNA_02558	0.55	+2.0
2,705,531	+		CCNA_02558	0.55	-1.7
2,705,531	+		CCNA_02558	0.55	+0.8
2,705,539	-		CCNA_02558	0.56	+0.6
2,705,539	-		CCNA_02558	0.56	+1.0
2,705,539	-		CCNA_02558	0.56	-0.2
2,705,539	-		CCNA_02558	0.56	-0.1
2,705,539	-		CCNA_02558	0.56	+0.2
2,705,539	-		CCNA_02558	0.56	-0.7
2,705,539	-		CCNA_02558	0.56	+0.6
2,705,539	-		CCNA_02558	0.56	+1.3
2,705,539	-		CCNA_02558	0.56	-1.7
2,705,539	-		CCNA_02558	0.56	-0.4
2,705,539	-		CCNA_02558	0.56	-0.9
2,705,541	+		CCNA_02558	0.56	-0.4
2,705,559	-		CCNA_02558	0.57	-0.8
2,705,573	+		CCNA_02558	0.58	+0.5
2,705,573	+		CCNA_02558	0.58	-1.6
2,705,573	+		CCNA_02558	0.58	-0.1
2,705,573	+		CCNA_02558	0.58	+0.5
2,705,573	+		CCNA_02558	0.58	+1.4
2,705,573	+		CCNA_02558	0.58	+0.1
2,705,573	+		CCNA_02558	0.58	-0.4
2,705,581	-		CCNA_02558	0.58	-0.4
2,705,581	-		CCNA_02558	0.58	+1.4
2,705,591	-		CCNA_02558	0.59	-1.3
2,705,607	+		CCNA_02558	0.60	-0.3
2,705,620	+		CCNA_02558	0.61	-0.3
2,705,628	-		CCNA_02558	0.61	+0.7
2,705,642	+		CCNA_02558	0.62	+1.3
2,705,644	+		CCNA_02558	0.62	+2.8
2,705,644	+		CCNA_02558	0.62	+0.0
2,705,667	-		CCNA_02558	0.64	-1.8
2,705,686	-		CCNA_02558	0.65	-0.4
2,705,703	+		CCNA_02558	0.66	+0.1
2,705,708	+		CCNA_02558	0.66	+1.8
2,705,708	+		CCNA_02558	0.66	+0.8
2,705,708	+		CCNA_02558	0.66	+0.4
2,705,708	+		CCNA_02558	0.66	+1.1
2,705,708	+		CCNA_02558	0.66	-2.6
2,705,708	+		CCNA_02558	0.66	-0.3
2,705,708	+		CCNA_02558	0.66	-0.1
2,705,713	+		CCNA_02558	0.67	-1.1
2,705,716	-		CCNA_02558	0.67	+1.1
2,705,716	-		CCNA_02558	0.67	+1.8
2,705,716	-		CCNA_02558	0.67	-1.3
2,705,716	-		CCNA_02558	0.67	+0.6
2,705,716	-		CCNA_02558	0.67	-0.9
2,705,716	-		CCNA_02558	0.67	-0.9
2,705,716	-		CCNA_02558	0.67	+0.4
2,705,799	+		CCNA_02558	0.72	+0.0
2,705,815	+		CCNA_02558	0.73	+1.8
2,705,815	+		CCNA_02558	0.73	+1.0
2,705,823	-		CCNA_02558	0.74	-0.2
2,705,846	-		CCNA_02558	0.75	+0.4
2,705,856	-		CCNA_02558	0.76	-1.2
2,705,867	-		CCNA_02558	0.76	+0.2
2,705,874	+				+2.1
2,705,875	-		CCNA_02558	0.77	+2.8
2,705,875	-		CCNA_02558	0.77	+0.1
2,705,882	-		CCNA_02558	0.77	-0.3
2,705,902	-		CCNA_02558	0.79	-2.0
2,705,902	-		CCNA_02558	0.79	+0.8
2,705,902	-		CCNA_02558	0.79	+1.0
2,705,906	+		CCNA_02558	0.79	-2.1
2,705,909	-		CCNA_02558	0.79	-1.5
2,705,919	+		CCNA_02558	0.80	+0.3
2,705,937	-		CCNA_02558	0.81	-0.6
2,705,937	-		CCNA_02558	0.81	-0.8
2,705,937	-		CCNA_02558	0.81	-2.3
2,705,999	+		CCNA_02558	0.85	+2.3
2,705,999	+		CCNA_02558	0.85	-0.6
2,706,007	+		CCNA_02558	0.85	+1.9
2,706,007	+		CCNA_02558	0.85	+2.3
2,706,078	+		CCNA_02558	0.90	+0.5
2,706,103	+				-0.6
2,706,103	+				+1.6
2,706,111	-				-0.4
2,706,111	-				+2.8
2,706,143	-				-0.4
2,706,148	-				+0.5
2,706,178	-				-1.4
2,706,192	+				-0.3
2,706,215	-				+0.5
2,706,223	-				+1.3
2,706,296	+		CCNA_02559	0.12	+0.6
2,706,296	+		CCNA_02559	0.12	+1.0
2,706,297	+		CCNA_02559	0.12	+1.1
2,706,297	+		CCNA_02559	0.12	+1.1
2,706,297	+		CCNA_02559	0.12	+0.7
2,706,304	-		CCNA_02559	0.14	-1.5
2,706,305	-		CCNA_02559	0.14	+2.1
2,706,305	-		CCNA_02559	0.14	+1.6
2,706,329	+		CCNA_02559	0.19	+1.7
2,706,337	-		CCNA_02559	0.20	-0.4
2,706,337	-		CCNA_02559	0.20	+0.2
2,706,345	+		CCNA_02559	0.22	+0.7
2,706,365	-		CCNA_02559	0.26	+1.8
2,706,406	-		CCNA_02559	0.34	+1.0
2,706,406	-		CCNA_02559	0.34	-0.4
2,706,441	+		CCNA_02559	0.41	-0.0
2,706,484	-		CCNA_02559	0.50	+1.7
2,706,484	-		CCNA_02559	0.50	-0.1
2,706,511	-		CCNA_02559	0.56	+0.6
2,706,511	-		CCNA_02559	0.56	+0.7
2,706,522	-		CCNA_02559	0.58	+1.3
2,706,562	-		CCNA_02559	0.66	+1.6
2,706,623	+		CCNA_02559	0.78	+1.3
2,706,623	+		CCNA_02559	0.78	+0.5
2,706,631	-		CCNA_02559	0.80	-1.6
2,706,631	-		CCNA_02559	0.80	+1.8
2,706,696	+				+0.9
2,706,698	+				+0.3
2,706,698	+				+1.4
2,706,706	-				+1.5
2,706,709	-				+2.1
2,706,711	-				+2.8
2,706,845	+				-0.0
2,706,853	-				+2.2
2,706,890	+				-1.8
2,706,925	-		CCNA_02560	0.11	+2.4
2,706,930	-		CCNA_02560	0.12	+2.5
2,706,962	+		CCNA_02560	0.17	+0.2
2,706,970	-		CCNA_02560	0.18	+2.9
2,706,970	-		CCNA_02560	0.18	+3.2
2,706,970	-		CCNA_02560	0.18	-0.4
2,706,970	-		CCNA_02560	0.18	+2.8
2,706,970	-		CCNA_02560	0.18	+2.1
2,706,971	-		CCNA_02560	0.18	+2.8
2,707,041	+		CCNA_02560	0.29	+0.6
2,707,054	-		CCNA_02560	0.31	+2.8
2,707,070	+		CCNA_02560	0.34	-0.9
2,707,078	-		CCNA_02560	0.35	+3.2
2,707,078	-		CCNA_02560	0.35	+2.4
2,707,082	+		CCNA_02560	0.36	+1.2
2,707,103	+		CCNA_02560	0.39	-0.5
2,707,143	+		CCNA_02560	0.45	-0.3
2,707,151	-		CCNA_02560	0.46	+3.0
2,707,151	-		CCNA_02560	0.46	+3.5
2,707,171	-		CCNA_02560	0.50	+3.2
2,707,174	+		CCNA_02560	0.50	-1.9
2,707,174	+		CCNA_02560	0.50	-1.9
2,707,182	-		CCNA_02560	0.51	+3.0
2,707,184	+		CCNA_02560	0.52	+0.9
2,707,189	+		CCNA_02560	0.52	+0.4
2,707,189	+		CCNA_02560	0.52	+0.8
2,707,189	+		CCNA_02560	0.52	-0.8
2,707,189	+		CCNA_02560	0.52	+0.5
2,707,192	-		CCNA_02560	0.53	+2.3
2,707,192	-		CCNA_02560	0.53	+2.3
2,707,197	-		CCNA_02560	0.54	+2.7
2,707,197	-		CCNA_02560	0.54	+2.8
2,707,197	-		CCNA_02560	0.54	+2.5
2,707,197	-		CCNA_02560	0.54	+2.4
2,707,197	-		CCNA_02560	0.54	+2.7
2,707,199	+		CCNA_02560	0.54	+0.3
2,707,199	+		CCNA_02560	0.54	-1.2
2,707,199	+		CCNA_02560	0.54	+1.4