Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02540

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,688,428	+		CCNA_02539	0.26	+0.2
2,688,435	-		CCNA_02539	0.26	+3.8
2,688,436	-		CCNA_02539	0.27	+2.8
2,688,454	+		CCNA_02539	0.28	-0.6
2,688,459	+		CCNA_02539	0.29	+1.5
2,688,459	+		CCNA_02539	0.29	-2.0
2,688,459	+		CCNA_02539	0.29	-0.0
2,688,459	+		CCNA_02539	0.29	+2.0
2,688,459	+		CCNA_02539	0.29	-0.5
2,688,467	-		CCNA_02539	0.29	+0.6
2,688,467	-		CCNA_02539	0.29	-1.5
2,688,467	-		CCNA_02539	0.29	+0.1
2,688,467	-		CCNA_02539	0.29	-0.6
2,688,467	-				+1.6
2,688,472	-		CCNA_02539	0.30	-0.5
2,688,521	+		CCNA_02539	0.34	+2.8
2,688,565	-		CCNA_02539	0.38	+1.5
2,688,572	-		CCNA_02539	0.38	+1.5
2,688,606	+		CCNA_02539	0.41	-1.3
2,688,656	+		CCNA_02539	0.46	+2.4
2,688,667	+		CCNA_02539	0.47	+0.1
2,688,669	+		CCNA_02539	0.47	+0.2
2,688,674	+		CCNA_02539	0.47	+1.8
2,688,677	-		CCNA_02539	0.48	+1.0
2,688,682	-		CCNA_02539	0.48	-1.0
2,688,682	-		CCNA_02539	0.48	-1.1
2,688,682	-		CCNA_02539	0.48	+0.6
2,688,682	-		CCNA_02539	0.48	-0.5
2,688,682	-		CCNA_02539	0.48	-0.1
2,688,682	-		CCNA_02539	0.48	+0.2
2,688,684	+		CCNA_02539	0.48	+1.6
2,688,728	+		CCNA_02539	0.52	+0.2
2,688,728	+		CCNA_02539	0.52	+1.3
2,688,822	+		CCNA_02539	0.60	+0.7
2,688,827	+		CCNA_02539	0.61	+1.1
2,688,835	-		CCNA_02539	0.61	-1.8
2,688,855	+		CCNA_02539	0.63	+0.5
2,688,890	+		CCNA_02539	0.66	-1.0
2,688,911	+		CCNA_02539	0.68	+1.4
2,688,924	+		CCNA_02539	0.69	+1.6
2,688,941	-		CCNA_02539	0.71	+0.1
2,688,941	-		CCNA_02539	0.71	+0.8
2,688,954	+		CCNA_02539	0.72	+2.4
2,688,968	-		CCNA_02539	0.73	-1.0
2,689,014	+		CCNA_02539	0.77	+1.9
2,689,014	+		CCNA_02539	0.77	+0.8
2,689,021	+		CCNA_02539	0.78	-0.2
2,689,021	+		CCNA_02539	0.78	+1.7
2,689,029	-		CCNA_02539	0.78	+0.4
2,689,029	-		CCNA_02539	0.78	-0.6
2,689,029	-		CCNA_02539	0.78	+0.0
2,689,061	-		CCNA_02539	0.81	-0.0
2,689,118	-		CCNA_02539	0.86	+0.6
2,689,131	-		CCNA_02539	0.87	+1.1
2,689,149	-		CCNA_02539	0.89	+0.1
2,689,153	+		CCNA_02539	0.89	+1.5
2,689,153	+		CCNA_02539	0.89	+1.0
2,689,202	+				+2.0
2,689,208	-				+1.1
2,689,270	-				+3.0
2,689,280	-				+2.6
2,689,339	+				+2.0
2,689,353	-				+2.6
2,689,403	+				-0.2
2,689,403	+				-0.8
2,689,429	-				+2.9
2,689,434	-				+2.8
2,689,434	-				+2.1
2,689,449	-				+2.9
2,689,465	+				-0.1
2,689,486	+				+0.9
2,689,609	-		CCNA_02540	0.15	+1.1
2,689,621	+		CCNA_02540	0.16	-0.9
2,689,640	-		CCNA_02540	0.18	+0.9
2,689,643	+		CCNA_02540	0.18	+0.4
2,689,655	-		CCNA_02540	0.19	+1.7
2,689,667	+		CCNA_02540	0.20	-1.2
2,689,667	+		CCNA_02540	0.20	-0.6
2,689,667	+		CCNA_02540	0.20	+0.1
2,689,675	-		CCNA_02540	0.21	+2.3
2,689,686	+		CCNA_02540	0.21	+1.0
2,689,686	+		CCNA_02540	0.21	+1.8
2,689,700	+		CCNA_02540	0.22	+1.0
2,689,708	-		CCNA_02540	0.23	-1.3
2,689,708	-		CCNA_02540	0.23	+1.4
2,689,708	-		CCNA_02540	0.23	+2.9
2,689,708	-		CCNA_02540	0.23	+2.2
2,689,708	-		CCNA_02540	0.23	+1.8
2,689,711	+		CCNA_02540	0.23	+0.1
2,689,729	-		CCNA_02540	0.25	+1.8
2,689,785	+		CCNA_02540	0.29	-0.3
2,689,797	+		CCNA_02540	0.30	-1.0
2,689,800	+		CCNA_02540	0.30	-1.0
2,689,808	-		CCNA_02540	0.31	+1.4
2,689,828	-		CCNA_02540	0.32	+0.6
2,689,837	-		CCNA_02540	0.33	+2.7
2,689,844	+		CCNA_02540	0.34	-1.2
2,689,893	-		CCNA_02540	0.37	+4.1
2,689,935	+		CCNA_02540	0.41	-0.2
2,690,016	+		CCNA_02540	0.47	-0.3
2,690,024	-		CCNA_02540	0.47	+1.2
2,690,024	-		CCNA_02540	0.47	+0.7
2,690,038	+		CCNA_02540	0.48	-2.5
2,690,048	+		CCNA_02540	0.49	+1.8
2,690,058	-		CCNA_02540	0.50	+1.1
2,690,129	+		CCNA_02540	0.56	-1.4
2,690,134	+		CCNA_02540	0.56	+1.8
2,690,154	+		CCNA_02540	0.57	-0.2
2,690,160	+		CCNA_02540	0.58	+0.3
2,690,221	-		CCNA_02540	0.63	+0.6
2,690,221	-		CCNA_02540	0.63	+1.0
2,690,222	+		CCNA_02540	0.63	-1.1
2,690,235	-		CCNA_02540	0.64	+1.1
2,690,249	-		CCNA_02540	0.65	+1.7
2,690,259	-		CCNA_02540	0.66	+1.8
2,690,259	-		CCNA_02540	0.66	+2.4
2,690,259	-		CCNA_02540	0.66	+1.8
2,690,259	-		CCNA_02540	0.66	+1.9
2,690,305	+		CCNA_02540	0.69	+1.0
2,690,331	-		CCNA_02540	0.71	+2.5
2,690,342	+		CCNA_02540	0.72	+0.4
2,690,349	+		CCNA_02540	0.72	+5.1
2,690,350	-		CCNA_02540	0.73	+0.2
2,690,372	+		CCNA_02540	0.74	-0.8
2,690,403	-		CCNA_02540	0.77	+1.8
2,690,413	+		CCNA_02540	0.77	+0.7
2,690,482	-		CCNA_02540	0.83	+1.6
2,690,498	+		CCNA_02540	0.84	+1.1
2,690,498	+		CCNA_02540	0.84	-1.3
2,690,500	-		CCNA_02540	0.84	+0.4
2,690,528	-		CCNA_02540	0.86	+1.1
2,690,528	-		CCNA_02540	0.86	+0.9
2,690,535	+		CCNA_02540	0.87	+0.4
2,690,535	+		CCNA_02540	0.87	-0.9
2,690,536	-		CCNA_02540	0.87	+0.6
2,690,543	-		CCNA_02540	0.87	+1.4
2,690,588	+				-0.0
2,690,588	+				-0.2
2,690,588	+				-0.0
2,690,596	-				-1.3
2,690,596	-				+2.0
2,690,603	+				+1.6
2,690,615	+				+0.1
2,690,642	+				+0.8
2,690,642	+				-0.4
2,690,665	-				+1.6
2,690,669	-				+0.4
2,690,677	-				+1.5
2,690,742	-				+1.4
2,690,765	-				+2.3
2,690,791	+				+1.0
2,690,799	-				-1.7
2,690,821	+				-0.0
2,690,829	-				+2.8
2,690,829	-				+0.2
2,690,829	-				+0.5
2,690,875	+				-0.4
2,690,908	+				-0.4
2,690,911	-				-2.6
2,690,916	-				+5.4
2,690,923	+				-0.8
2,690,927	+				+0.5
2,690,931	-				-0.5
2,690,931	-				+1.5
2,690,931	-				+1.4
2,690,932	+				-0.3
2,690,932	+				+0.0
2,690,932	+				-0.2
2,690,932	+				+0.0
2,690,932	+				-0.4
2,690,932	+				+1.2
2,690,940	-				+1.3
2,690,940	-				+0.5
2,690,940	-				-0.0
2,690,977	+				+1.7
2,691,022	-		CCNA_02541	0.11	-0.2
2,691,031	+		CCNA_02541	0.12	-1.1
2,691,061	+		CCNA_02541	0.16	+1.0
2,691,069	-		CCNA_02541	0.17	+0.1
2,691,107	-		CCNA_02541	0.22	+1.8
2,691,141	+		CCNA_02541	0.27	+2.0
2,691,183	-		CCNA_02541	0.33	-0.1
2,691,188	-		CCNA_02541	0.34	+1.6
2,691,219	-		CCNA_02541	0.38	+1.1
2,691,227	+		CCNA_02541	0.39	-0.3
2,691,235	-		CCNA_02541	0.40	+2.1
2,691,248	-		CCNA_02541	0.42	-0.9
2,691,273	+		CCNA_02541	0.45	-0.7
2,691,292	-		CCNA_02541	0.48	-0.7
2,691,294	+		CCNA_02541	0.48	+0.6
2,691,305	+		CCNA_02541	0.50	-1.3
2,691,313	-		CCNA_02541	0.51	+0.1
2,691,313	-		CCNA_02541	0.51	+1.4
2,691,313	-		CCNA_02541	0.51	-1.4
2,691,376	+		CCNA_02541	0.59	+0.1
2,691,376	+		CCNA_02541	0.59	+0.8
2,691,376	+		CCNA_02541	0.59	-0.6
2,691,379	-		CCNA_02541	0.60	+0.7
2,691,384	-		CCNA_02541	0.60	-0.1
2,691,384	-		CCNA_02541	0.60	-0.9
2,691,412	-		CCNA_02541	0.64	-0.7
2,691,529	+		CCNA_02541	0.80	-2.2
2,691,531	-		CCNA_02541	0.81	+1.6
2,691,546	+		CCNA_02541	0.83	+0.5
2,691,546	+		CCNA_02541	0.83	-0.1
2,691,546	+		CCNA_02541	0.83	+1.5
2,691,546	+		CCNA_02541	0.83	+1.6
2,691,546	+		CCNA_02541	0.83	+1.1
2,691,546	+		CCNA_02541	0.83	-0.2
2,691,546	+		CCNA_02541	0.83	-0.1
2,691,546	+		CCNA_02541	0.83	+1.4
2,691,546	+		CCNA_02541	0.83	+1.8
2,691,546	+		CCNA_02541	0.83	+0.4
2,691,546	+		CCNA_02541	0.83	-1.3
2,691,546	+		CCNA_02541	0.83	+0.2
2,691,546	+		CCNA_02541	0.83	+0.7
2,691,546	+		CCNA_02541	0.83	-2.0
2,691,546	+		CCNA_02541	0.83	-0.1
2,691,546	+		CCNA_02541	0.83	-1.2
2,691,547	+		CCNA_02541	0.83	-0.1
2,691,547	+		CCNA_02541	0.83	+2.1
2,691,554	-		CCNA_02541	0.84	-1.6
2,691,554	-		CCNA_02541	0.84	-0.7
2,691,554	-		CCNA_02541	0.84	+0.1
2,691,554	-		CCNA_02541	0.84	+1.0
2,691,554	-		CCNA_02541	0.84	+0.7
2,691,554	-		CCNA_02541	0.84	+0.1
2,691,554	-		CCNA_02541	0.84	-1.8
2,691,554	-		CCNA_02541	0.84	+2.4
2,691,554	-		CCNA_02541	0.84	-0.2
2,691,555	-		CCNA_02541	0.84	-1.3
2,691,557	+		CCNA_02541	0.84	+0.0
2,691,557	+		CCNA_02541	0.84	-1.1
2,691,557	+		CCNA_02541	0.84	+1.1
2,691,565	-		CCNA_02541	0.85	-0.5
2,691,565	-		CCNA_02541	0.85	+0.7
2,691,592	+		CCNA_02541	0.89	-0.3
2,691,608	+				+1.1
2,691,608	+				-0.2
2,691,616	+				+1.7
2,691,626	+				+0.4
2,691,626	+				-0.7
2,691,626	+				+0.7
2,691,634	-				-0.9
2,691,657	-				-1.5
2,691,665	+				+0.4
2,691,665	+				-1.6
2,691,684	+				-0.9
2,691,684	+				+2.1
2,691,684	+				-1.2
2,691,692	-				+1.4
2,691,692	-				+1.2