Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02515

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,664,732	+				-0.4
2,664,732	+				-1.3
2,664,740	-				+1.0
2,664,745	-				-0.5
2,664,805	+				-1.7
2,664,812	+				-0.7
2,664,837	+				+0.6
2,664,861	+				+2.1
2,664,861	+				-0.9
2,664,869	-				+1.0
2,664,869	-				-0.0
2,664,873	-				+1.3
2,664,901	-				+3.9
2,664,901	-				+3.9
2,664,925	+				+2.1
2,664,928	+				+1.5
2,664,950	+				+1.7
2,664,950	+				-0.4
2,664,950	+				+1.7
2,664,958	-				-0.5
2,664,958	-				-0.8
2,664,958	-				+2.8
2,664,980	-				+0.1
2,664,982	-				+0.9
2,665,007	+		CCNA_02514	0.10	+1.5
2,665,007	+		CCNA_02514	0.10	+1.2
2,665,015	-		CCNA_02514	0.11	+0.7
2,665,015	-		CCNA_02514	0.11	+0.7
2,665,015	-		CCNA_02514	0.11	+0.5
2,665,022	+		CCNA_02514	0.12	+0.6
2,665,027	+		CCNA_02514	0.13	+0.8
2,665,030	-		CCNA_02514	0.13	+1.0
2,665,052	-		CCNA_02514	0.16	+1.2
2,665,082	-		CCNA_02514	0.20	+2.5
2,665,087	-		CCNA_02514	0.21	-0.1
2,665,126	+		CCNA_02514	0.26	-0.1
2,665,154	+		CCNA_02514	0.30	-0.7
2,665,250	-		CCNA_02514	0.43	+0.6
2,665,263	+		CCNA_02514	0.45	+1.0
2,665,270	-		CCNA_02514	0.45	-1.3
2,665,293	-		CCNA_02514	0.49	+1.0
2,665,298	+		CCNA_02514	0.49	+1.5
2,665,320	+		CCNA_02514	0.52	+0.3
2,665,321	+		CCNA_02514	0.52	-1.5
2,665,330	-		CCNA_02514	0.54	-1.2
2,665,399	+		CCNA_02514	0.63	+1.2
2,665,399	+		CCNA_02514	0.63	+1.7
2,665,403	+		CCNA_02514	0.63	-0.9
2,665,418	+		CCNA_02514	0.65	-0.3
2,665,466	-		CCNA_02514	0.72	+0.0
2,665,509	+		CCNA_02514	0.78	-0.0
2,665,514	+		CCNA_02514	0.78	-0.1
2,665,514	+		CCNA_02514	0.78	-1.0
2,665,562	+		CCNA_02514	0.85	+1.6
2,665,715	-				+0.5
2,665,719	+				+0.1
2,665,727	-				+1.3
2,665,746	+		CCNA_02515	0.11	+0.3
2,665,774	+		CCNA_02515	0.21	-1.0
2,665,782	-		CCNA_02515	0.24	-0.1
2,665,786	-		CCNA_02515	0.25	-0.8
2,665,798	+		CCNA_02515	0.29	+0.1
2,665,806	-		CCNA_02515	0.32	+1.8
2,665,812	-		CCNA_02515	0.34	+1.3
2,665,813	-		CCNA_02515	0.35	+0.5
2,665,824	+		CCNA_02515	0.39	-1.0
2,665,837	+		CCNA_02515	0.43	-0.4
2,665,845	-		CCNA_02515	0.46	-1.7
2,665,861	+		CCNA_02515	0.52	+1.2
2,665,866	+		CCNA_02515	0.54	+1.0
2,665,866	+		CCNA_02515	0.54	+0.5
2,665,874	-		CCNA_02515	0.57	+3.4
2,665,874	-		CCNA_02515	0.57	+0.6
2,665,881	+		CCNA_02515	0.59	+1.1
2,665,881	+		CCNA_02515	0.59	-2.5
2,665,889	-		CCNA_02515	0.62	-1.0
2,665,889	-		CCNA_02515	0.62	+1.6
2,665,894	+		CCNA_02515	0.64	+0.7
2,665,899	+		CCNA_02515	0.66	-0.4
2,665,899	+		CCNA_02515	0.66	+1.2
2,665,899	-		CCNA_02515	0.66	+0.7
2,665,899	-		CCNA_02515	0.66	+0.6
2,665,904	+		CCNA_02515	0.67	+2.8
2,665,991	-				+1.1
2,665,997	-				+0.3
2,665,997	-				+1.2
2,666,040	+				-0.8
2,666,158	-				+3.3
2,666,193	-				+1.0
2,666,203	-				+1.6
2,666,224	+				+0.4
2,666,232	-				+0.0
2,666,259	+		CCNA_02516	0.13	+1.1
2,666,267	-		CCNA_02516	0.14	+2.4
2,666,267	-		CCNA_02516	0.14	-1.8
2,666,267	-		CCNA_02516	0.14	+0.5
2,666,277	-		CCNA_02516	0.15	-0.9
2,666,303	+		CCNA_02516	0.19	-0.1
2,666,303	+		CCNA_02516	0.19	-0.3
2,666,309	+		CCNA_02516	0.20	-0.5
2,666,311	-		CCNA_02516	0.20	-0.5
2,666,317	-		CCNA_02516	0.21	-0.7
2,666,317	-		CCNA_02516	0.21	+0.2
2,666,349	-		CCNA_02516	0.25	-0.3
2,666,363	+		CCNA_02516	0.27	-0.2
2,666,419	+		CCNA_02516	0.35	+1.8
2,666,419	+		CCNA_02516	0.35	+2.1
2,666,421	+		CCNA_02516	0.35	-0.3
2,666,425	-		CCNA_02516	0.36	-0.5
2,666,429	-		CCNA_02516	0.36	+1.8
2,666,429	-		CCNA_02516	0.36	-0.4
2,666,442	-		CCNA_02516	0.38	-1.3
2,666,458	+		CCNA_02516	0.40	-0.9
2,666,463	+		CCNA_02516	0.41	+0.6
2,666,481	+		CCNA_02516	0.43	+0.6
2,666,519	+		CCNA_02516	0.48	+0.4
2,666,558	+		CCNA_02516	0.54	+0.8
2,666,558	+		CCNA_02516	0.54	-0.2
2,666,590	-		CCNA_02516	0.58	+1.1
2,666,600	-		CCNA_02516	0.60	+0.7
2,666,600	-		CCNA_02516	0.60	-1.1
2,666,600	-		CCNA_02516	0.60	-1.3
2,666,632	-		CCNA_02516	0.64	-0.6
2,666,632	-		CCNA_02516	0.64	-0.7
2,666,632	-		CCNA_02516	0.64	+1.2
2,666,632	-		CCNA_02516	0.64	-0.3
2,666,637	-		CCNA_02516	0.65	-1.1
2,666,656	+		CCNA_02516	0.67	+2.1
2,666,758	-		CCNA_02516	0.81	+0.8
2,666,762	+		CCNA_02516	0.82	-1.1
2,666,762	+		CCNA_02516	0.82	-0.8
2,666,762	+		CCNA_02516	0.82	-0.9
2,666,770	-		CCNA_02516	0.83	-1.4
2,666,770	-		CCNA_02516	0.83	-0.7
2,666,770	-		CCNA_02516	0.83	-0.8
2,666,791	-		CCNA_02516	0.86	-0.6
2,666,804	-		CCNA_02516	0.88	+0.8
2,666,809	+		CCNA_02516	0.88	-1.1
2,666,812	-		CCNA_02516	0.89	-1.7
2,666,822	-				+2.1
2,666,869	-				-0.1
2,666,896	-				-0.6
2,666,981	+				+1.7
2,666,989	-				+2.0