Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02487

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,634,163	-				+0.1
2,634,233	+				-0.8
2,634,269	-		CCNA_02486	0.12	-0.9
2,634,276	-		CCNA_02486	0.13	-0.1
2,634,328	-		CCNA_02486	0.19	+2.4
2,634,343	+		CCNA_02486	0.20	+0.1
2,634,346	-		CCNA_02486	0.21	+1.6
2,634,351	-		CCNA_02486	0.21	-0.4
2,634,351	-		CCNA_02486	0.21	-1.4
2,634,355	+		CCNA_02486	0.22	-0.7
2,634,361	-		CCNA_02486	0.22	-0.9
2,634,424	-		CCNA_02486	0.29	-0.6
2,634,431	-		CCNA_02486	0.30	+1.2
2,634,442	+		CCNA_02486	0.31	-0.9
2,634,455	+		CCNA_02486	0.33	-2.5
2,634,458	-		CCNA_02486	0.33	-0.1
2,634,502	-		CCNA_02486	0.38	+0.7
2,634,532	-		CCNA_02486	0.41	-0.1
2,634,565	-		CCNA_02486	0.45	+0.9
2,634,591	-		CCNA_02486	0.48	+0.7
2,634,622	-		CCNA_02486	0.52	+1.1
2,634,622	-		CCNA_02486	0.52	+2.2
2,634,622	-		CCNA_02486	0.52	+0.3
2,634,622	-		CCNA_02486	0.52	+0.4
2,634,657	-		CCNA_02486	0.55	-0.7
2,634,664	-		CCNA_02486	0.56	-1.1
2,634,741	+		CCNA_02486	0.65	-0.3
2,634,757	+		CCNA_02486	0.67	-0.7
2,634,757	+		CCNA_02486	0.67	-0.2
2,634,762	+		CCNA_02486	0.67	+2.4
2,634,765	-		CCNA_02486	0.68	-0.2
2,634,765	-		CCNA_02486	0.68	+0.2
2,634,900	-		CCNA_02486	0.83	-1.3
2,634,910	-		CCNA_02486	0.84	-0.2
2,634,920	-		CCNA_02486	0.85	-0.0
2,635,084	+				+0.4
2,635,110	-				-0.1
2,635,119	+				+0.5
2,635,119	+				+0.7
2,635,119	+				+0.9
2,635,129	+				+2.1
2,635,152	-				-1.0
2,635,154	+				-1.7
2,635,154	+				+0.9
2,635,154	+				+0.4
2,635,162	-				+0.9
2,635,162	-				-0.8
2,635,162	-				+0.4
2,635,162	-				+0.2
2,635,162	-				+0.2
2,635,162	-				+1.4
2,635,162	-				-0.0
2,635,162	-				+2.4
2,635,175	+				-0.3
2,635,220	-				+1.2
2,635,278	-				-1.1
2,635,304	+		CCNA_02487	0.12	-0.0
2,635,304	+		CCNA_02487	0.12	+1.4
2,635,311	-		CCNA_02487	0.13	+0.2
2,635,312	-		CCNA_02487	0.13	-1.0
2,635,324	-		CCNA_02487	0.14	+1.1
2,635,337	+		CCNA_02487	0.15	-0.1
2,635,351	+		CCNA_02487	0.16	+0.3
2,635,356	+		CCNA_02487	0.16	-1.4
2,635,400	+		CCNA_02487	0.20	-1.2
2,635,402	+		CCNA_02487	0.20	-1.0
2,635,410	-		CCNA_02487	0.21	+1.6
2,635,412	+		CCNA_02487	0.21	-0.4
2,635,414	-		CCNA_02487	0.21	+0.1
2,635,464	+		CCNA_02487	0.25	+0.8
2,635,495	+		CCNA_02487	0.28	-1.1
2,635,531	-		CCNA_02487	0.31	-0.5
2,635,536	+		CCNA_02487	0.31	+0.1
2,635,536	+		CCNA_02487	0.31	+0.2
2,635,631	-		CCNA_02487	0.39	+1.1
2,635,718	+		CCNA_02487	0.46	+0.6
2,635,720	+		CCNA_02487	0.46	-0.2
2,635,727	+		CCNA_02487	0.47	-1.5
2,635,728	+		CCNA_02487	0.47	-1.5
2,635,728	+		CCNA_02487	0.47	+0.3
2,635,736	-		CCNA_02487	0.47	+1.1
2,635,798	+		CCNA_02487	0.52	-0.1
2,635,868	+		CCNA_02487	0.58	+0.1
2,635,897	+		CCNA_02487	0.61	+1.1
2,635,938	+		CCNA_02487	0.64	-0.3
2,636,000	+		CCNA_02487	0.69	-1.6
2,636,008	-		CCNA_02487	0.70	-1.0
2,636,013	-		CCNA_02487	0.70	+2.1
2,636,086	+		CCNA_02487	0.76	-1.4
2,636,093	+		CCNA_02487	0.77	+0.8
2,636,101	-		CCNA_02487	0.77	-0.7
2,636,118	+		CCNA_02487	0.79	-1.2
2,636,163	+		CCNA_02487	0.82	+0.8
2,636,208	-		CCNA_02487	0.86	+1.2
2,636,214	-		CCNA_02487	0.87	-1.4
2,636,244	+		CCNA_02487	0.89	-0.7
2,636,259	+				-1.2
2,636,282	-				+3.9
2,636,311	+				-0.7
2,636,311	+				+0.9
2,636,311	+				+0.2
2,636,335	+				-1.7
2,636,342	-				-0.8
2,636,361	+				-2.7
2,636,374	+				+1.6
2,636,380	-				+0.6
2,636,389	-				-0.6
2,636,389	-				+0.8
2,636,392	-				+0.1
2,636,408	+				+0.5
2,636,416	-				+0.9
2,636,416	-				+0.7
2,636,429	+				-0.5
2,636,429	+				-1.8
2,636,429	+				-1.8
2,636,429	+				+0.3
2,636,437	-				+0.4
2,636,437	-				-0.0
2,636,437	-				+0.7
2,636,437	-				-2.0
2,636,437	-				-0.1
2,636,437	-				+1.6
2,636,454	+				-0.0
2,636,459	+		CCNA_02488	0.10	+1.8
2,636,467	-		CCNA_02488	0.11	+1.6
2,636,475	+		CCNA_02488	0.12	+1.8
2,636,510	-		CCNA_02488	0.17	-0.7
2,636,521	-		CCNA_02488	0.19	-0.9
2,636,529	-		CCNA_02488	0.20	+4.8
2,636,546	-		CCNA_02488	0.22	+1.1
2,636,591	+		CCNA_02488	0.28	+0.5
2,636,599	-		CCNA_02488	0.29	+1.8
2,636,666	-		CCNA_02488	0.38	-0.7
2,636,757	-		CCNA_02488	0.51	-1.4
2,636,777	+		CCNA_02488	0.53	+0.2
2,636,788	+		CCNA_02488	0.55	+0.1
2,636,798	+		CCNA_02488	0.56	+0.3
2,636,817	+		CCNA_02488	0.59	+1.1
2,636,958	-		CCNA_02488	0.78	+0.5
2,636,966	+		CCNA_02488	0.79	+1.8
2,636,967	-		CCNA_02488	0.79	+0.4
2,636,985	+		CCNA_02488	0.81	-0.3
2,637,017	+		CCNA_02488	0.86	+0.4
2,637,095	-				-2.0
2,637,102	+				+0.2
2,637,122	-				+1.4
2,637,123	+				+1.4
2,637,255	-		CCNA_02489	0.21	-1.9
2,637,281	-		CCNA_02489	0.25	-0.2
2,637,307	+		CCNA_02489	0.29	+0.2
2,637,310	-		CCNA_02489	0.29	-0.6
2,637,313	+		CCNA_02489	0.30	+1.6
2,637,315	-		CCNA_02489	0.30	+0.3
2,637,316	-		CCNA_02489	0.30	+0.1
2,637,318	+		CCNA_02489	0.30	+2.1
2,637,326	-		CCNA_02489	0.32	+1.0
2,637,326	-		CCNA_02489	0.32	+0.2
2,637,341	+		CCNA_02489	0.34	+0.3
2,637,341	+		CCNA_02489	0.34	+0.8
2,637,349	-		CCNA_02489	0.35	+0.8
2,637,349	-		CCNA_02489	0.35	+1.1
2,637,349	-		CCNA_02489	0.35	-0.3
2,637,355	+		CCNA_02489	0.36	+0.6
2,637,372	-		CCNA_02489	0.39	-1.4
2,637,376	+		CCNA_02489	0.39	+0.4
2,637,376	+		CCNA_02489	0.39	-0.0
2,637,376	+		CCNA_02489	0.39	-1.4
2,637,376	+		CCNA_02489	0.39	+2.3