Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02472

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,613,943	+		CCNA_02471	0.22	+1.0
2,613,948	+		CCNA_02471	0.22	+1.8
2,613,952	+		CCNA_02471	0.23	+3.4
2,613,999	+		CCNA_02471	0.26	+1.5
2,614,000	-		CCNA_02471	0.26	+0.3
2,614,007	-		CCNA_02471	0.27	+0.0
2,614,022	+		CCNA_02471	0.28	+0.3
2,614,073	+		CCNA_02471	0.32	+0.8
2,614,134	+		CCNA_02471	0.37	-0.2
2,614,142	-		CCNA_02471	0.38	-0.2
2,614,167	-		CCNA_02471	0.40	+2.8
2,614,167	-		CCNA_02471	0.40	-0.1
2,614,252	+		CCNA_02471	0.46	-0.9
2,614,272	-		CCNA_02471	0.48	-1.8
2,614,300	+		CCNA_02471	0.50	+2.8
2,614,300	+		CCNA_02471	0.50	-1.1
2,614,337	+		CCNA_02471	0.53	-0.9
2,614,337	+		CCNA_02471	0.53	-1.7
2,614,402	+		CCNA_02471	0.58	+1.2
2,614,402	+		CCNA_02471	0.58	+1.0
2,614,410	-		CCNA_02471	0.59	+0.5
2,614,435	+				+2.0
2,614,435	+		CCNA_02471	0.61	+2.2
2,614,435	+		CCNA_02471	0.61	-0.6
2,614,436	-		CCNA_02471	0.61	-0.2
2,614,443	-		CCNA_02471	0.61	+0.3
2,614,443	-		CCNA_02471	0.61	+0.9
2,614,458	-		CCNA_02471	0.63	+1.3
2,614,458	-		CCNA_02471	0.63	+1.1
2,614,458	-		CCNA_02471	0.63	+0.4
2,614,465	+		CCNA_02471	0.63	+0.3
2,614,582	+		CCNA_02471	0.72	-1.4
2,614,590	-		CCNA_02471	0.73	+0.7
2,614,608	+		CCNA_02471	0.74	+0.7
2,614,616	-		CCNA_02471	0.75	+0.5
2,614,663	+		CCNA_02471	0.79	-0.0
2,614,673	+		CCNA_02471	0.80	+0.9
2,614,681	-		CCNA_02471	0.80	-0.0
2,614,718	-		CCNA_02471	0.83	-0.2
2,614,735	+		CCNA_02471	0.85	+0.5
2,614,747	-		CCNA_02471	0.85	-0.4
2,614,803	-		CCNA_02471	0.90	-0.2
2,614,868	+				-1.3
2,614,885	-				-2.0
2,614,898	+				+0.5
2,614,898	+				-1.2
2,614,898	+				+0.0
2,614,898	+				+0.5
2,614,898	+				+0.0
2,614,906	-				+2.8
2,614,906	-				+1.7
2,614,906	-				+0.3
2,614,908	-				-1.0
2,614,910	+				+0.4
2,614,960	+				+0.2
2,614,961	+				-0.2
2,614,968	-				+0.3
2,614,968	-				+1.4
2,614,986	-				+1.4
2,614,986	-				-0.3
2,615,013	+				+0.6
2,615,013	+				+1.2
2,615,013	+				+2.2
2,615,013	+				-0.5
2,615,049	+				+0.3
2,615,071	+		CCNA_02472	0.11	-1.0
2,615,081	+		CCNA_02472	0.12	+1.8
2,615,108	+		CCNA_02472	0.14	+1.6
2,615,123	+		CCNA_02472	0.16	+1.8
2,615,135	+		CCNA_02472	0.16	-0.2
2,615,154	+		CCNA_02472	0.18	-0.5
2,615,154	+		CCNA_02472	0.18	-1.2
2,615,156	-		CCNA_02472	0.18	+1.0
2,615,205	+		CCNA_02472	0.22	+0.6
2,615,205	+		CCNA_02472	0.22	-0.3
2,615,213	-		CCNA_02472	0.23	-1.0
2,615,213	-		CCNA_02472	0.23	-0.8
2,615,213	-		CCNA_02472	0.23	-0.7
2,615,215	-		CCNA_02472	0.23	-1.3
2,615,215	-		CCNA_02472	0.23	+0.3
2,615,312	-		CCNA_02472	0.30	+1.6
2,615,314	-		CCNA_02472	0.31	+0.2
2,615,314	-		CCNA_02472	0.31	+1.0
2,615,327	-		CCNA_02472	0.32	-1.8
2,615,341	-		CCNA_02472	0.33	-0.1
2,615,476	+		CCNA_02472	0.43	-0.4
2,615,476	+		CCNA_02472	0.43	-1.0
2,615,483	-		CCNA_02472	0.44	+0.2
2,615,500	+		CCNA_02472	0.45	+0.4
2,615,500	+		CCNA_02472	0.45	+0.6
2,615,500	+		CCNA_02472	0.45	-1.3
2,615,506	+		CCNA_02472	0.46	+0.1
2,615,527	-		CCNA_02472	0.48	-0.6
2,615,537	-		CCNA_02472	0.48	-0.8
2,615,537	-		CCNA_02472	0.48	-0.4
2,615,549	+		CCNA_02472	0.49	-1.0
2,615,561	-		CCNA_02472	0.50	+1.6
2,615,580	-		CCNA_02472	0.52	-0.4
2,615,580	-		CCNA_02472	0.52	-0.9
2,615,608	+		CCNA_02472	0.54	-1.7
2,615,616	-		CCNA_02472	0.55	+1.4
2,615,616	-		CCNA_02472	0.55	-0.2
2,615,616	-		CCNA_02472	0.55	+4.0
2,615,616	-		CCNA_02472	0.55	+0.4
2,615,648	-		CCNA_02472	0.57	+0.1
2,615,676	+		CCNA_02472	0.59	+0.9
2,615,684	-		CCNA_02472	0.60	+1.6
2,615,763	+		CCNA_02472	0.66	-0.9
2,615,773	+		CCNA_02472	0.67	-1.2
2,615,778	+		CCNA_02472	0.67	+1.8
2,615,780	+		CCNA_02472	0.68	-0.2
2,615,826	+		CCNA_02472	0.71	+1.4
2,615,831	+		CCNA_02472	0.72	+0.4
2,615,834	-		CCNA_02472	0.72	+1.6
2,615,834	-		CCNA_02472	0.72	-0.5
2,615,836	+		CCNA_02472	0.72	-0.9
2,615,836	+		CCNA_02472	0.72	-0.4
2,615,846	+		CCNA_02472	0.73	-0.4
2,615,868	-		CCNA_02472	0.75	-0.7
2,615,868	-		CCNA_02472	0.75	+0.2
2,615,923	-		CCNA_02472	0.79	-0.1
2,615,935	+		CCNA_02472	0.80	+0.8
2,615,949	-		CCNA_02472	0.81	-0.7
2,615,978	+		CCNA_02472	0.83	+0.4
2,616,014	-		CCNA_02472	0.86	-1.0
2,616,038	+		CCNA_02472	0.88	+0.1
2,616,046	-		CCNA_02472	0.89	-0.6
2,616,046	-		CCNA_02472	0.89	-0.5
2,616,139	+				+1.4
2,616,147	-				+1.6
2,616,147	-				-0.5
2,616,147	-				-0.2
2,616,147	-				-1.1
2,616,147	-				-0.8
2,616,343	+				+0.8
2,616,356	+				-0.4
2,616,371	+				-1.5
2,616,437	+				+1.3
2,616,475	+				+1.0
2,616,505	+		CCNA_02473	0.11	+2.1
2,616,505	+		CCNA_02473	0.11	+0.8
2,616,506	-		CCNA_02473	0.11	+3.4
2,616,506	-		CCNA_02473	0.11	-2.0
2,616,570	+		CCNA_02473	0.13	-1.1
2,616,576	+		CCNA_02473	0.13	+0.9
2,616,590	-		CCNA_02473	0.14	+0.8
2,616,597	+		CCNA_02473	0.14	-0.6
2,616,605	-		CCNA_02473	0.14	-0.3
2,616,616	-		CCNA_02473	0.14	+1.2
2,616,667	+		CCNA_02473	0.16	+0.5
2,616,667	+		CCNA_02473	0.16	-0.3
2,616,668	+		CCNA_02473	0.16	+1.8
2,616,675	-		CCNA_02473	0.16	-1.2
2,616,691	-		CCNA_02473	0.17	+2.4
2,616,695	+		CCNA_02473	0.17	+0.8
2,616,695	+		CCNA_02473	0.17	+2.0
2,616,695	+		CCNA_02473	0.17	+0.8
2,616,695	+		CCNA_02473	0.17	+2.4
2,616,703	-		CCNA_02473	0.17	+0.7
2,616,703	-		CCNA_02473	0.17	+0.9
2,616,703	-		CCNA_02473	0.17	-1.1
2,616,703	-		CCNA_02473	0.17	-0.7
2,616,703	-		CCNA_02473	0.17	-0.5
2,616,703	-		CCNA_02473	0.17	-0.7
2,616,708	-		CCNA_02473	0.17	+1.2
2,616,708	-		CCNA_02473	0.17	+0.9
2,616,714	+		CCNA_02473	0.18	-0.6
2,616,714	+		CCNA_02473	0.18	-0.8
2,616,714	+		CCNA_02473	0.18	+0.0
2,616,722	-		CCNA_02473	0.18	-0.1
2,616,722	-		CCNA_02473	0.18	-0.4
2,616,722	-		CCNA_02473	0.18	+1.3
2,616,722	-		CCNA_02473	0.18	+1.1
2,616,722	-		CCNA_02473	0.18	+2.0
2,616,722	-		CCNA_02473	0.18	-0.7
2,616,746	-		CCNA_02473	0.19	+4.0
2,616,749	+		CCNA_02473	0.19	-1.0
2,616,756	-		CCNA_02473	0.19	-0.3
2,616,778	+		CCNA_02473	0.20	-0.8
2,616,791	+		CCNA_02473	0.20	-0.0
2,616,813	+		CCNA_02473	0.21	-1.1
2,616,845	+		CCNA_02473	0.22	-0.0
2,616,846	-		CCNA_02473	0.22	-0.2
2,616,851	+		CCNA_02473	0.22	-1.0
2,616,882	+		CCNA_02473	0.23	-0.7
2,616,904	+		CCNA_02473	0.24	+1.0
2,616,913	-		CCNA_02473	0.24	+0.2
2,616,913	-		CCNA_02473	0.24	+0.0
2,616,913	-		CCNA_02473	0.24	+0.1
2,616,913	-		CCNA_02473	0.24	-1.4
2,616,936	-		CCNA_02473	0.25	+0.2
2,616,936	-		CCNA_02473	0.25	+1.4
2,616,946	+		CCNA_02473	0.25	-1.4
2,616,946	+		CCNA_02473	0.25	-2.0
2,616,946	+		CCNA_02473	0.25	+0.2
2,616,946	+		CCNA_02473	0.25	+0.8
2,616,946	+		CCNA_02473	0.25	-0.2
2,616,946	+		CCNA_02473	0.25	+0.3
2,616,946	+		CCNA_02473	0.25	+0.2
2,616,954	-		CCNA_02473	0.25	+1.7
2,616,954	-		CCNA_02473	0.25	+0.2
2,616,954	-		CCNA_02473	0.25	-0.6
2,616,954	-		CCNA_02473	0.25	+0.3
2,616,954	-		CCNA_02473	0.25	-0.4
2,616,954	-		CCNA_02473	0.25	+0.9
2,616,954	-		CCNA_02473	0.25	-0.0
2,616,954	-		CCNA_02473	0.25	+1.2
2,616,954	-		CCNA_02473	0.25	-0.3
2,617,020	+		CCNA_02473	0.27	+0.8
2,617,020	+		CCNA_02473	0.27	-0.2
2,617,028	-		CCNA_02473	0.27	+1.2
2,617,028	-		CCNA_02473	0.27	-0.7
2,617,028	-		CCNA_02473	0.27	+1.4
2,617,064	-		CCNA_02473	0.29	-0.6
2,617,069	+		CCNA_02473	0.29	-1.1
2,617,069	+		CCNA_02473	0.29	+0.7
2,617,077	-		CCNA_02473	0.29	-0.0
2,617,142	-		CCNA_02473	0.31	+1.8
2,617,176	-		CCNA_02473	0.32	+0.8
2,617,184	+		CCNA_02473	0.32	+0.7
2,617,184	+		CCNA_02473	0.32	-1.3