Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02440

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,580,213	+		CCNA_02439	0.24	-0.0
2,580,216	-		CCNA_02439	0.24	+0.8
2,580,226	+		CCNA_02439	0.25	+1.0
2,580,233	-		CCNA_02439	0.25	-1.1
2,580,254	+		CCNA_02439	0.27	-0.4
2,580,278	+		CCNA_02439	0.29	-0.6
2,580,283	+		CCNA_02439	0.29	+1.1
2,580,310	+		CCNA_02439	0.31	+0.7
2,580,311	-		CCNA_02439	0.31	-0.3
2,580,383	-		CCNA_02439	0.37	-0.0
2,580,383	-		CCNA_02439	0.37	-1.5
2,580,385	-		CCNA_02439	0.37	-1.5
2,580,385	-		CCNA_02439	0.37	-0.6
2,580,414	+		CCNA_02439	0.39	+0.4
2,580,422	-		CCNA_02439	0.40	+1.2
2,580,432	-		CCNA_02439	0.41	+2.8
2,580,491	-		CCNA_02439	0.45	-1.4
2,580,511	-		CCNA_02439	0.47	-0.6
2,580,545	+		CCNA_02439	0.49	-1.7
2,580,553	-		CCNA_02439	0.50	+0.8
2,580,553	-		CCNA_02439	0.50	-1.0
2,580,553	-		CCNA_02439	0.50	+2.4
2,580,733	+		CCNA_02439	0.64	-1.1
2,580,799	+		CCNA_02439	0.69	-0.2
2,580,806	+		CCNA_02439	0.70	-0.6
2,580,814	-		CCNA_02439	0.70	+3.8
2,580,824	-		CCNA_02439	0.71	-1.5
2,580,831	-		CCNA_02439	0.72	+0.7
2,580,836	-		CCNA_02439	0.72	+1.7
2,580,863	+		CCNA_02439	0.74	-0.9
2,580,864	-		CCNA_02439	0.74	+0.2
2,580,876	-		CCNA_02439	0.75	-1.3
2,580,897	+		CCNA_02439	0.77	-1.6
2,580,920	-		CCNA_02439	0.78	-1.5
2,580,920	-		CCNA_02439	0.78	+0.5
2,580,920	-		CCNA_02439	0.78	+1.2
2,580,936	-		CCNA_02439	0.80	+1.4
2,580,938	+		CCNA_02439	0.80	-0.4
2,580,946	-		CCNA_02439	0.81	+1.0
2,580,946	-		CCNA_02439	0.81	-0.6
2,580,946	-		CCNA_02439	0.81	+1.4
2,580,946	-		CCNA_02439	0.81	+0.9
2,580,946	-		CCNA_02439	0.81	+0.5
2,580,950	+		CCNA_02439	0.81	-0.8
2,580,950	+		CCNA_02439	0.81	+0.3
2,580,965	+		CCNA_02439	0.82	-0.1
2,580,983	+		CCNA_02439	0.83	-0.2
2,581,012	-		CCNA_02439	0.86	-0.6
2,581,017	-		CCNA_02439	0.86	+0.4
2,581,041	+		CCNA_02439	0.88	-1.3
2,581,042	+		CCNA_02439	0.88	-0.5
2,581,050	-		CCNA_02439	0.89	+1.0
2,581,064	+		CCNA_02439	0.90	-0.6
2,581,064	+		CCNA_02439	0.90	+1.0
2,581,129	-				+1.1
2,581,129	-				-0.9
2,581,129	-				+4.4
2,581,149	+				-0.9
2,581,171	+				+0.2
2,581,179	-				-1.0
2,581,179	-				-0.0
2,581,179	-				-0.0
2,581,186	-				-0.4
2,581,188	+				+3.1
2,581,200	-				-1.0
2,581,204	+				-0.5
2,581,206	+				+1.3
2,581,207	-				+1.3
2,581,250	+				+0.9
2,581,267	+				-1.5
2,581,278	+				-0.4
2,581,304	-				+0.4
2,581,304	-				-0.5
2,581,310	+				-0.2
2,581,315	+		CCNA_02440	0.10	-0.9
2,581,318	-		CCNA_02440	0.11	+0.3
2,581,319	+		CCNA_02440	0.11	+0.8
2,581,324	+		CCNA_02440	0.11	+0.1
2,581,332	-		CCNA_02440	0.12	-0.1
2,581,379	+		CCNA_02440	0.17	-1.9
2,581,387	-		CCNA_02440	0.17	-0.4
2,581,554	+		CCNA_02440	0.33	+0.0
2,581,579	-		CCNA_02440	0.36	+0.0
2,581,631	+		CCNA_02440	0.41	-0.9
2,581,631	+		CCNA_02440	0.41	-0.6
2,581,633	+		CCNA_02440	0.41	-1.2
2,581,639	-		CCNA_02440	0.41	-1.1
2,581,667	-		CCNA_02440	0.44	+2.5
2,581,667	-		CCNA_02440	0.44	-1.2
2,581,667	-		CCNA_02440	0.44	+0.4
2,581,718	+		CCNA_02440	0.49	+0.2
2,581,726	-		CCNA_02440	0.50	+0.6
2,581,730	-		CCNA_02440	0.50	+0.0
2,581,755	+		CCNA_02440	0.53	+0.6
2,581,769	+		CCNA_02440	0.54	-1.3
2,581,835	+		CCNA_02440	0.60	+1.4
2,581,843	-		CCNA_02440	0.61	+1.3
2,581,844	-		CCNA_02440	0.61	+0.9
2,581,870	+		CCNA_02440	0.64	+0.5
2,581,870	+		CCNA_02440	0.64	+1.2
2,581,873	+		CCNA_02440	0.64	+0.4
2,581,873	+		CCNA_02440	0.64	-0.9
2,581,882	+		CCNA_02440	0.65	+1.0
2,581,886	+		CCNA_02440	0.65	-0.9
2,582,024	+		CCNA_02440	0.78	-0.3
2,582,026	-		CCNA_02440	0.79	+3.2
2,582,032	-		CCNA_02440	0.79	-0.4
2,582,128	-		CCNA_02440	0.88	-1.1
2,582,155	-				+0.4
2,582,242	+				-1.4
2,582,242	+				-0.6
2,582,242	+				-0.3
2,582,242	+				+1.3
2,582,250	-				-1.6
2,582,250	-				+0.1
2,582,272	+				-0.9
2,582,280	-				-0.7
2,582,280	-				+0.5
2,582,280	-				-1.6
2,582,307	+				+0.5
2,582,318	+				+0.3
2,582,326	-				-0.2
2,582,337	+				-0.3
2,582,339	-				+1.9
2,582,339	-				+1.4
2,582,345	-				+0.2
2,582,345	-				-0.6
2,582,345	-				+0.0
2,582,394	+				-0.9
2,582,402	-				-1.6
2,582,404	+				-1.5
2,582,407	-				-0.1
2,582,407	-				-0.2
2,582,419	+				+1.2
2,582,440	+				+2.4
2,582,468	-				+1.4
2,582,487	-				+0.5
2,582,488	+				+0.1
2,582,507	+				+0.4
2,582,519	+				-0.5
2,582,527	-				+0.6
2,582,632	+		CCNA_02441	0.29	+0.6
2,582,636	-		CCNA_02441	0.31	-3.0
2,582,640	+		CCNA_02441	0.34	-0.5
2,582,655	+		CCNA_02441	0.43	-1.2
2,582,681	-		CCNA_02441	0.60	+0.0
2,582,736	-				-0.7
2,582,746	-				-0.2
2,582,755	+				+2.3
2,582,755	+				+0.4
2,582,755	+				+1.0
2,582,763	-				-2.0
2,582,763	-				-0.8
2,582,763	-				-0.5
2,582,763	-				-0.7
2,582,763	-				+0.4
2,582,763	-				-1.5
2,582,763	-				+0.6
2,582,763	-				+0.7
2,582,785	-				+0.0
2,582,827	+				-1.5
2,582,835	+				-0.4
2,582,843	-				-0.8
2,582,877	-				-1.3
2,582,877	-				-0.7
2,582,890	+				-0.2
2,582,916	-		CCNA_02442	0.11	-1.0
2,582,998	-		CCNA_02442	0.16	+0.2
2,583,016	+		CCNA_02442	0.17	-1.0
2,583,016	+		CCNA_02442	0.17	+0.4
2,583,043	+		CCNA_02442	0.19	-0.8
2,583,050	+		CCNA_02442	0.19	-1.0
2,583,050	+		CCNA_02442	0.19	-0.9
2,583,077	-		CCNA_02442	0.21	+0.9
2,583,113	-		CCNA_02442	0.24	-0.1
2,583,139	+		CCNA_02442	0.25	+0.3
2,583,139	+		CCNA_02442	0.25	+1.2
2,583,147	-		CCNA_02442	0.26	-0.0
2,583,157	+		CCNA_02442	0.27	-1.0
2,583,157	+		CCNA_02442	0.27	+0.8
2,583,157	+		CCNA_02442	0.27	+0.0
2,583,170	-		CCNA_02442	0.27	+0.6
2,583,175	-		CCNA_02442	0.28	+1.5
2,583,213	-		CCNA_02442	0.30	-1.1