Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02411

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,554,153	-				+2.3
2,554,169	-		CCNA_02410	0.18	-0.8
2,554,169	-		CCNA_02410	0.18	+1.3
2,554,194	+		CCNA_02410	0.20	+0.5
2,554,204	-		CCNA_02410	0.21	+1.7
2,554,227	+		CCNA_02410	0.23	-0.3
2,554,234	-		CCNA_02410	0.23	-1.5
2,554,251	+		CCNA_02410	0.25	+1.7
2,554,252	-		CCNA_02410	0.25	+0.6
2,554,256	+		CCNA_02410	0.25	+0.9
2,554,259	-		CCNA_02410	0.25	-1.0
2,554,259	-		CCNA_02410	0.25	-0.8
2,554,271	+		CCNA_02410	0.26	-0.7
2,554,279	-		CCNA_02410	0.27	-1.1
2,554,291	-		CCNA_02410	0.28	+3.6
2,554,316	-		CCNA_02410	0.30	+0.1
2,554,327	-		CCNA_02410	0.31	-1.4
2,554,332	+		CCNA_02410	0.31	-0.3
2,554,340	-		CCNA_02410	0.32	+0.4
2,554,349	-		CCNA_02410	0.33	-0.1
2,554,424	+		CCNA_02410	0.39	-1.5
2,554,439	+		CCNA_02410	0.40	+0.5
2,554,449	+		CCNA_02410	0.41	-0.8
2,554,449	+		CCNA_02410	0.41	-0.8
2,554,449	+		CCNA_02410	0.41	+0.0
2,554,468	+		CCNA_02410	0.43	+1.4
2,554,503	+		CCNA_02410	0.46	-0.6
2,554,510	+		CCNA_02410	0.46	+0.4
2,554,532	-		CCNA_02410	0.48	-0.0
2,554,538	+		CCNA_02410	0.49	+1.5
2,554,546	-		CCNA_02410	0.49	-0.3
2,554,546	-		CCNA_02410	0.49	+0.3
2,554,546	-		CCNA_02410	0.49	-1.4
2,554,554	-		CCNA_02410	0.50	+0.1
2,554,644	+		CCNA_02410	0.58	+0.3
2,554,644	+		CCNA_02410	0.58	-0.0
2,554,693	+				+1.7
2,554,709	+		CCNA_02410	0.63	-0.2
2,554,717	-		CCNA_02410	0.64	+0.9
2,554,750	+		CCNA_02410	0.67	+0.4
2,554,750	+		CCNA_02410	0.67	+1.5
2,554,750	+		CCNA_02410	0.67	-0.2
2,554,751	+		CCNA_02410	0.67	+0.3
2,554,758	-		CCNA_02410	0.67	-0.4
2,554,758	-		CCNA_02410	0.67	+0.9
2,554,887	+		CCNA_02410	0.78	-1.3
2,554,895	-		CCNA_02410	0.79	-0.3
2,554,895	-		CCNA_02410	0.79	+0.0
2,554,902	+		CCNA_02410	0.79	-0.3
2,554,906	+		CCNA_02410	0.80	-0.2
2,554,914	-		CCNA_02410	0.80	+0.5
2,554,940	+		CCNA_02410	0.83	+0.7
2,555,018	+		CCNA_02410	0.89	+1.3
2,555,018	+		CCNA_02410	0.89	-0.8
2,555,050	-				+0.4
2,555,053	+				+0.9
2,555,092	-				+0.9
2,555,121	+				-0.6
2,555,129	-				-0.8
2,555,129	-				+2.8
2,555,140	-				-1.0
2,555,140	-				+0.8
2,555,189	-				+1.0
2,555,201	-				-0.3
2,555,215	+				-1.3
2,555,222	-		CCNA_02411	0.10	-1.1
2,555,252	+		CCNA_02411	0.14	-0.4
2,555,257	-		CCNA_02411	0.14	-0.3
2,555,277	+		CCNA_02411	0.16	-1.3
2,555,285	-		CCNA_02411	0.17	+0.2
2,555,286	-		CCNA_02411	0.18	-0.3
2,555,302	-		CCNA_02411	0.19	-1.7
2,555,321	-		CCNA_02411	0.22	-0.4
2,555,421	-		CCNA_02411	0.33	+1.3
2,555,423	+		CCNA_02411	0.33	-1.3
2,555,479	+		CCNA_02411	0.40	-0.5
2,555,487	-		CCNA_02411	0.41	+0.4
2,555,527	+		CCNA_02411	0.45	-1.7
2,555,529	-		CCNA_02411	0.46	+1.3
2,555,582	+		CCNA_02411	0.52	+0.9
2,555,582	+		CCNA_02411	0.52	+1.2
2,555,582	+		CCNA_02411	0.52	-0.1
2,555,582	+		CCNA_02411	0.52	-0.6
2,555,590	-		CCNA_02411	0.53	+0.8
2,555,590	-		CCNA_02411	0.53	+1.2
2,555,590	-		CCNA_02411	0.53	-0.1
2,555,590	-		CCNA_02411	0.53	+0.4
2,555,590	-		CCNA_02411	0.53	+1.9
2,555,590	-		CCNA_02411	0.53	+0.6
2,555,609	+		CCNA_02411	0.55	-0.1
2,555,626	+		CCNA_02411	0.57	-0.2
2,555,628	+		CCNA_02411	0.57	-0.7
2,555,628	+		CCNA_02411	0.57	-0.6
2,555,636	-		CCNA_02411	0.58	+1.0
2,555,636	-		CCNA_02411	0.58	+0.3
2,555,658	-		CCNA_02411	0.60	+1.3
2,555,723	+		CCNA_02411	0.68	-0.1
2,555,763	+		CCNA_02411	0.73	-0.1
2,555,771	-		CCNA_02411	0.73	+1.0
2,555,771	-		CCNA_02411	0.73	+1.7
2,555,771	-		CCNA_02411	0.73	+1.8
2,555,795	-		CCNA_02411	0.76	+0.7
2,555,816	+		CCNA_02411	0.79	-1.6
2,555,821	+		CCNA_02411	0.79	+0.0
2,555,829	-		CCNA_02411	0.80	+0.8
2,555,829	-		CCNA_02411	0.80	+1.6
2,555,834	+		CCNA_02411	0.81	-1.3
2,555,861	+		CCNA_02411	0.84	+2.3
2,555,869	-		CCNA_02411	0.85	+1.9
2,555,965	+				-0.1
2,555,972	+				+1.9
2,555,973	-				-1.4
2,556,001	+				+1.0
2,556,003	+				-0.0
2,556,003	+				-0.8
2,556,003	+				+0.1
2,556,006	-				+0.5
2,556,011	-				+1.4
2,556,011	-				-0.6
2,556,011	-				+1.0
2,556,011	-				+1.6
2,556,011	-				+1.7
2,556,075	-				-0.4
2,556,198	-				-0.9
2,556,227	+				-1.1
2,556,227	+				-0.1
2,556,237	+				+1.5
2,556,245	-				-1.8
2,556,266	-		CCNA_02412	0.10	+1.0
2,556,278	+		CCNA_02412	0.12	+2.3
2,556,278	+		CCNA_02412	0.12	-0.1
2,556,283	+		CCNA_02412	0.12	-0.8
2,556,286	-		CCNA_02412	0.13	+0.6
2,556,286	-		CCNA_02412	0.13	+0.3
2,556,291	-		CCNA_02412	0.14	+2.8
2,556,302	+		CCNA_02412	0.15	+0.6
2,556,320	-		CCNA_02412	0.18	+0.9
2,556,336	-		CCNA_02412	0.20	+0.2
2,556,336	-		CCNA_02412	0.20	+0.9
2,556,396	+		CCNA_02412	0.28	-0.9
2,556,409	-		CCNA_02412	0.30	-0.8
2,556,446	-		CCNA_02412	0.35	+1.5
2,556,468	+		CCNA_02412	0.38	+1.5
2,556,489	+		CCNA_02412	0.41	+1.4
2,556,489	+		CCNA_02412	0.41	+1.0
2,556,489	+		CCNA_02412	0.41	-1.6
2,556,497	-		CCNA_02412	0.42	+1.8
2,556,519	+		CCNA_02412	0.45	+0.5
2,556,520	+		CCNA_02412	0.45	-0.5
2,556,551	-		CCNA_02412	0.50	+0.7
2,556,612	+		CCNA_02412	0.58	+2.1
2,556,638	-		CCNA_02412	0.62	+0.2
2,556,667	+		CCNA_02412	0.66	-0.6
2,556,667	+		CCNA_02412	0.66	+0.4
2,556,694	-		CCNA_02412	0.69	-1.4
2,556,701	-		CCNA_02412	0.70	+1.2
2,556,712	-		CCNA_02412	0.72	+0.6
2,556,712	-		CCNA_02412	0.72	-0.2
2,556,718	+		CCNA_02412	0.73	-0.1
2,556,718	+		CCNA_02412	0.73	+0.8
2,556,718	+		CCNA_02412	0.73	+1.8
2,556,723	+		CCNA_02412	0.73	+0.0
2,556,726	+		CCNA_02412	0.74	+0.2
2,556,736	-		CCNA_02412	0.75	-0.6
2,556,749	-		CCNA_02412	0.77	+1.3
2,556,751	+		CCNA_02412	0.77	+0.2
2,556,751	+		CCNA_02412	0.77	-1.0
2,556,751	+		CCNA_02412	0.77	+0.3
2,556,759	-		CCNA_02412	0.78	-1.9
2,556,759	-		CCNA_02412	0.78	-0.4
2,556,759	-		CCNA_02412	0.78	+1.0
2,556,759	-		CCNA_02412	0.78	-0.0
2,556,759	-		CCNA_02412	0.78	+0.0
2,556,759	-		CCNA_02412	0.78	+0.2
2,556,759	-		CCNA_02412	0.78	+0.3
2,556,759	-		CCNA_02412	0.78	-0.1
2,556,933	+				+5.0
2,556,947	-				+1.2