Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02409

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,551,066	-		CCNA_02408	0.30	+0.8
2,551,084	+		CCNA_02408	0.31	+0.9
2,551,092	-		CCNA_02408	0.32	+1.1
2,551,121	-		CCNA_02408	0.34	+0.8
2,551,128	-		CCNA_02408	0.35	+2.3
2,551,142	-		CCNA_02408	0.36	+2.3
2,551,171	+		CCNA_02408	0.39	+1.2
2,551,215	-		CCNA_02408	0.43	+2.3
2,551,241	+		CCNA_02408	0.45	-0.9
2,551,241	+		CCNA_02408	0.45	+0.3
2,551,246	+		CCNA_02408	0.45	+0.2
2,551,246	+				+2.8
2,551,249	-		CCNA_02408	0.46	+0.9
2,551,249	-		CCNA_02408	0.46	+1.9
2,551,254	-		CCNA_02408	0.46	+1.0
2,551,254	-		CCNA_02408	0.46	+2.2
2,551,266	+		CCNA_02408	0.47	+1.2
2,551,323	+		CCNA_02408	0.52	+0.2
2,551,331	+		CCNA_02408	0.53	+2.0
2,551,386	+		CCNA_02408	0.58	+0.0
2,551,405	+		CCNA_02408	0.59	-0.3
2,551,434	+		CCNA_02408	0.62	-1.0
2,551,442	-		CCNA_02408	0.63	+0.5
2,551,448	+		CCNA_02408	0.63	-0.9
2,551,453	+		CCNA_02408	0.64	+0.9
2,551,466	-		CCNA_02408	0.65	+0.4
2,551,477	+		CCNA_02408	0.66	+2.3
2,551,529	-		CCNA_02408	0.70	+2.4
2,551,540	+		CCNA_02408	0.71	-0.1
2,551,548	-		CCNA_02408	0.72	+2.0
2,551,558	-		CCNA_02408	0.73	+0.8
2,551,582	-		CCNA_02408	0.75	+1.8
2,551,616	-		CCNA_02408	0.78	+2.3
2,551,659	+		CCNA_02408	0.82	+0.6
2,551,734	+		CCNA_02408	0.88	+0.2
2,551,735	+		CCNA_02408	0.89	+0.4
2,551,740	-		CCNA_02408	0.89	+0.7
2,551,743	-		CCNA_02408	0.89	+1.4
2,551,778	-				+1.1
2,551,811	+				+1.3
2,551,838	+				-1.1
2,551,846	-				-0.2
2,551,864	+				-1.0
2,551,867	-				-2.2
2,551,912	+				+0.4
2,551,946	-				+0.5
2,551,967	+				-0.9
2,552,000	+				+1.5
2,552,000	+				+0.0
2,552,000	+				-0.2
2,552,008	-				-0.8
2,552,008	-				+0.2
2,552,032	+				+2.0
2,552,034	+				+0.2
2,552,034	+				+0.7
2,552,058	+				+1.0
2,552,058	+				+2.3
2,552,066	-				-0.4
2,552,066	-				+1.5
2,552,075	+				+1.3
2,552,083	+				+1.9
2,552,083	+				+4.8
2,552,083	+				+3.8
2,552,096	+				+1.4
2,552,109	-				+0.2
2,552,138	-				+0.6
2,552,173	+				+2.4
2,552,211	+		CCNA_02409	0.11	+2.7
2,552,269	+		CCNA_02409	0.14	+1.3
2,552,306	-		CCNA_02409	0.16	+1.0
2,552,313	-		CCNA_02409	0.16	-0.5
2,552,337	-		CCNA_02409	0.18	+1.2
2,552,350	+		CCNA_02409	0.19	-0.4
2,552,375	-		CCNA_02409	0.20	+1.8
2,552,394	+		CCNA_02409	0.21	+0.1
2,552,396	+		CCNA_02409	0.21	+1.0
2,552,396	+		CCNA_02409	0.21	+0.9
2,552,404	-		CCNA_02409	0.22	+0.9
2,552,409	-		CCNA_02409	0.22	+0.2
2,552,453	-		CCNA_02409	0.24	-0.5
2,552,471	-		CCNA_02409	0.25	+0.1
2,552,485	+		CCNA_02409	0.26	-0.3
2,552,523	+		CCNA_02409	0.28	+1.6
2,552,524	-		CCNA_02409	0.28	+0.0
2,552,531	-		CCNA_02409	0.29	+0.2
2,552,558	-		CCNA_02409	0.30	+0.8
2,552,596	+		CCNA_02409	0.32	+1.3
2,552,604	+		CCNA_02409	0.33	+1.9
2,552,604	+		CCNA_02409	0.33	+0.2
2,552,604	+		CCNA_02409	0.33	-0.3
2,552,604	+		CCNA_02409	0.33	-0.8
2,552,604	+		CCNA_02409	0.33	-0.8
2,552,612	-				+2.3
2,552,612	-		CCNA_02409	0.33	-1.3
2,552,612	-		CCNA_02409	0.33	+0.2
2,552,614	+		CCNA_02409	0.33	+1.9
2,552,665	+		CCNA_02409	0.36	+0.6
2,552,687	+		CCNA_02409	0.37	-0.8
2,552,711	+		CCNA_02409	0.39	+1.0
2,552,716	+		CCNA_02409	0.39	+3.1
2,552,719	-				+2.0
2,552,759	-		CCNA_02409	0.41	+0.8
2,552,783	+		CCNA_02409	0.43	+1.3
2,552,785	+		CCNA_02409	0.43	-0.1
2,552,785	+		CCNA_02409	0.43	+0.1
2,552,785	+		CCNA_02409	0.43	+0.3
2,552,785	+		CCNA_02409	0.43	+0.5
2,552,785	+		CCNA_02409	0.43	+1.4
2,552,793	-		CCNA_02409	0.43	+0.3
2,552,807	+		CCNA_02409	0.44	+1.5
2,552,807	+		CCNA_02409	0.44	+1.5
2,552,807	+		CCNA_02409	0.44	+1.1
2,552,815	-		CCNA_02409	0.44	-2.6
2,552,869	+		CCNA_02409	0.47	+2.4
2,552,889	+		CCNA_02409	0.49	+0.7
2,552,909	+		CCNA_02409	0.50	-0.2
2,552,916	-		CCNA_02409	0.50	-0.4
2,552,922	-		CCNA_02409	0.50	+1.2
2,552,923	-		CCNA_02409	0.50	-1.8
2,552,954	+		CCNA_02409	0.52	+1.8
2,552,954	+		CCNA_02409	0.52	+0.2
2,552,954	+		CCNA_02409	0.52	+1.7
2,552,955	-		CCNA_02409	0.52	-0.6
2,552,962	-		CCNA_02409	0.53	-0.1
2,553,045	+		CCNA_02409	0.57	+1.6
2,553,072	+		CCNA_02409	0.59	-0.4
2,553,072	+		CCNA_02409	0.59	+2.2
2,553,080	-		CCNA_02409	0.59	-0.3
2,553,144	+		CCNA_02409	0.63	+2.0
2,553,193	+		CCNA_02409	0.65	+0.8
2,553,221	+		CCNA_02409	0.67	+1.8
2,553,221	+		CCNA_02409	0.67	+1.8
2,553,237	+		CCNA_02409	0.68	+0.4
2,553,237	+		CCNA_02409	0.68	+2.7
2,553,237	+		CCNA_02409	0.68	+0.8
2,553,245	-		CCNA_02409	0.68	-1.2
2,553,245	-		CCNA_02409	0.68	+2.8
2,553,245	-		CCNA_02409	0.68	-1.2
2,553,245	-		CCNA_02409	0.68	-0.8
2,553,303	-		CCNA_02409	0.72	-0.5
2,553,327	+		CCNA_02409	0.73	+1.2
2,553,339	+		CCNA_02409	0.74	+0.3
2,553,376	+		CCNA_02409	0.76	+1.0
2,553,384	-		CCNA_02409	0.76	+0.0
2,553,387	+		CCNA_02409	0.76	+0.8
2,553,398	-		CCNA_02409	0.77	-0.6
2,553,399	+		CCNA_02409	0.77	+0.2
2,553,424	+		CCNA_02409	0.78	+2.5
2,553,453	+		CCNA_02409	0.80	+1.0
2,553,458	+		CCNA_02409	0.80	+3.1
2,553,458	+		CCNA_02409	0.80	+0.8
2,553,458	+		CCNA_02409	0.80	+0.9
2,553,463	+		CCNA_02409	0.81	+0.6
2,553,464	-		CCNA_02409	0.81	+0.1
2,553,466	-		CCNA_02409	0.81	+2.3
2,553,466	-		CCNA_02409	0.81	+2.2
2,553,466	-		CCNA_02409	0.81	-1.5
2,553,466	-		CCNA_02409	0.81	+1.4
2,553,473	+		CCNA_02409	0.81	+1.2
2,553,481	-		CCNA_02409	0.82	-0.5
2,553,481	-		CCNA_02409	0.82	+0.2
2,553,514	+		CCNA_02409	0.83	+1.4
2,553,543	-		CCNA_02409	0.85	-0.8
2,553,543	-		CCNA_02409	0.85	-2.4
2,553,549	+		CCNA_02409	0.85	-0.6
2,553,567	-		CCNA_02409	0.86	+1.5
2,553,576	-		CCNA_02409	0.87	-0.7
2,553,624	-		CCNA_02409	0.90	-0.3
2,553,629	+		CCNA_02409	0.90	+1.7
2,553,632	-				+0.2
2,553,639	+				+0.8
2,553,736	-				-0.5
2,553,743	+				+1.0
2,553,755	+				+0.5
2,553,755	+				+1.7
2,553,774	+				+2.8
2,553,888	+				+0.9
2,553,888	+				+0.7
2,553,888	+				+0.6
2,553,888	+				+1.4
2,553,888	+				+1.0
2,553,888	+				-0.1
2,553,888	+				+0.2
2,553,896	-				+0.6
2,553,924	+				-0.2
2,553,959	+				-0.3
2,554,054	-				+0.2
2,554,061	+				-1.1
2,554,088	+		CCNA_02410	0.11	+0.2
2,554,102	+		CCNA_02410	0.12	+0.6
2,554,110	-		CCNA_02410	0.13	-0.2
2,554,110	-		CCNA_02410	0.13	-0.8
2,554,115	+		CCNA_02410	0.13	-0.5
2,554,153	-				+2.3
2,554,169	-		CCNA_02410	0.18	-0.8
2,554,169	-		CCNA_02410	0.18	+1.3
2,554,194	+		CCNA_02410	0.20	+0.5
2,554,204	-		CCNA_02410	0.21	+1.7
2,554,227	+		CCNA_02410	0.23	-0.3
2,554,234	-		CCNA_02410	0.23	-1.5
2,554,251	+		CCNA_02410	0.25	+1.7
2,554,252	-		CCNA_02410	0.25	+0.6
2,554,256	+		CCNA_02410	0.25	+0.9
2,554,259	-		CCNA_02410	0.25	-1.0
2,554,259	-		CCNA_02410	0.25	-0.8
2,554,271	+		CCNA_02410	0.26	-0.7
2,554,279	-		CCNA_02410	0.27	-1.1
2,554,291	-		CCNA_02410	0.28	+3.6
2,554,316	-		CCNA_02410	0.30	+0.1
2,554,327	-		CCNA_02410	0.31	-1.4
2,554,332	+		CCNA_02410	0.31	-0.3
2,554,340	-		CCNA_02410	0.32	+0.4
2,554,349	-		CCNA_02410	0.33	-0.1
2,554,424	+		CCNA_02410	0.39	-1.5
2,554,439	+		CCNA_02410	0.40	+0.5
2,554,449	+		CCNA_02410	0.41	-0.8
2,554,449	+		CCNA_02410	0.41	-0.8
2,554,449	+		CCNA_02410	0.41	+0.0
2,554,468	+		CCNA_02410	0.43	+1.4
2,554,503	+		CCNA_02410	0.46	-0.6
2,554,510	+		CCNA_02410	0.46	+0.4
2,554,532	-		CCNA_02410	0.48	-0.0
2,554,538	+		CCNA_02410	0.49	+1.5
2,554,546	-		CCNA_02410	0.49	-0.3
2,554,546	-		CCNA_02410	0.49	+0.3
2,554,546	-		CCNA_02410	0.49	-1.4
2,554,554	-		CCNA_02410	0.50	+0.1
2,554,644	+		CCNA_02410	0.58	+0.3
2,554,644	+		CCNA_02410	0.58	-0.0
2,554,693	+				+1.7
2,554,709	+		CCNA_02410	0.63	-0.2
2,554,717	-		CCNA_02410	0.64	+0.9
2,554,750	+		CCNA_02410	0.67	+0.4
2,554,750	+		CCNA_02410	0.67	+1.5
2,554,750	+		CCNA_02410	0.67	-0.2
2,554,751	+		CCNA_02410	0.67	+0.3
2,554,758	-		CCNA_02410	0.67	-0.4
2,554,758	-		CCNA_02410	0.67	+0.9