Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02406

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,548,250	-				+0.9
2,548,296	+				+0.4
2,548,340	+				-0.3
2,548,348	-				-0.9
2,548,348	-				-2.2
2,548,362	+				-0.2
2,548,364	+				-0.0
2,548,364	+				+0.9
2,548,372	-				-0.1
2,548,372	-				-1.5
2,548,372	-				+1.2
2,548,372	-				-1.0
2,548,372	-				+0.8
2,548,379	-				-1.5
2,548,379	-				-0.4
2,548,410	-		CCNA_02405	0.10	+2.5
2,548,428	+		CCNA_02405	0.12	-0.5
2,548,462	+		CCNA_02405	0.16	+0.2
2,548,466	+		CCNA_02405	0.16	-0.5
2,548,470	-		CCNA_02405	0.17	+1.0
2,548,529	+		CCNA_02405	0.23	+1.2
2,548,529	+		CCNA_02405	0.23	-1.2
2,548,573	+		CCNA_02405	0.28	-0.1
2,548,573	+		CCNA_02405	0.28	+1.5
2,548,581	-		CCNA_02405	0.28	+0.8
2,548,600	+		CCNA_02405	0.30	+2.6
2,548,600	+		CCNA_02405	0.30	+2.0
2,548,616	-		CCNA_02405	0.32	+0.9
2,548,632	+		CCNA_02405	0.34	+1.6
2,548,640	-		CCNA_02405	0.35	-0.9
2,548,644	+		CCNA_02405	0.35	-0.2
2,548,647	-		CCNA_02405	0.35	-0.9
2,548,657	-		CCNA_02405	0.37	+0.4
2,548,667	+		CCNA_02405	0.38	-0.1
2,548,727	+		CCNA_02405	0.44	+0.3
2,548,748	+		CCNA_02405	0.46	+0.9
2,548,756	-		CCNA_02405	0.47	-0.1
2,548,767	+		CCNA_02405	0.48	+1.0
2,548,767	+		CCNA_02405	0.48	+1.2
2,548,767	+		CCNA_02405	0.48	-0.2
2,548,770	-		CCNA_02405	0.49	+0.3
2,548,775	-		CCNA_02405	0.49	+2.2
2,548,775	-		CCNA_02405	0.49	-0.5
2,548,780	-		CCNA_02405	0.50	-0.4
2,548,834	-		CCNA_02405	0.55	-0.4
2,548,845	+		CCNA_02405	0.57	+1.1
2,548,845	+		CCNA_02405	0.57	+1.0
2,548,853	-		CCNA_02405	0.57	-0.9
2,548,856	+		CCNA_02405	0.58	-0.6
2,548,909	+		CCNA_02405	0.63	+1.1
2,548,917	+		CCNA_02405	0.64	+0.8
2,548,917	+		CCNA_02405	0.64	+1.5
2,548,917	-		CCNA_02405	0.64	-1.2
2,548,925	-		CCNA_02405	0.65	+0.6
2,548,950	+		CCNA_02405	0.68	+0.5
2,548,972	+		CCNA_02405	0.70	+0.3
2,548,972	+		CCNA_02405	0.70	+0.2
2,549,013	-		CCNA_02405	0.74	+1.1
2,549,013	-		CCNA_02405	0.74	-0.5
2,549,013	-		CCNA_02405	0.74	-0.2
2,549,015	+		CCNA_02405	0.75	+1.2
2,549,015	+		CCNA_02405	0.75	-0.2
2,549,039	-		CCNA_02405	0.77	+0.8
2,549,048	+		CCNA_02405	0.78	+0.3
2,549,056	-		CCNA_02405	0.79	-0.1
2,549,140	+		CCNA_02405	0.88	-0.7
2,549,151	-		CCNA_02405	0.89	+0.3
2,549,199	-				+0.1
2,549,240	+				+1.4
2,549,240	+				+1.8
2,549,278	-				-1.7
2,549,292	-				+0.5
2,549,298	-				-1.1
2,549,331	+		CCNA_02406	0.13	-0.7
2,549,331	+		CCNA_02406	0.13	+1.2
2,549,364	+		CCNA_02406	0.18	+2.5
2,549,364	+		CCNA_02406	0.18	+1.6
2,549,420	+		CCNA_02406	0.26	-0.0
2,549,430	+		CCNA_02406	0.28	+0.8
2,549,430	-		CCNA_02406	0.28	+1.7
2,549,430	-		CCNA_02406	0.28	+0.6
2,549,439	-		CCNA_02406	0.29	+0.1
2,549,446	-		CCNA_02406	0.30	-1.4
2,549,447	+		CCNA_02406	0.30	+3.5
2,549,455	-		CCNA_02406	0.32	+0.3
2,549,455	-		CCNA_02406	0.32	+0.5
2,549,538	+		CCNA_02406	0.44	+1.4
2,549,546	-		CCNA_02406	0.46	+0.8
2,549,546	-		CCNA_02406	0.46	-0.2
2,549,582	+		CCNA_02406	0.51	+0.5
2,549,582	+		CCNA_02406	0.51	+0.5
2,549,582	+		CCNA_02406	0.51	+0.2
2,549,590	-		CCNA_02406	0.52	+0.9
2,549,625	+		CCNA_02406	0.58	-1.0
2,549,628	-		CCNA_02406	0.58	+2.2
2,549,634	-		CCNA_02406	0.59	-0.8
2,549,651	+		CCNA_02406	0.62	+0.7
2,549,651	+		CCNA_02406	0.62	+2.3
2,549,659	-		CCNA_02406	0.63	-2.0
2,549,659	-		CCNA_02406	0.63	-0.6
2,549,666	-		CCNA_02406	0.64	-0.6
2,549,691	-		CCNA_02406	0.68	+0.2
2,549,694	+		CCNA_02406	0.68	+1.4
2,549,700	+		CCNA_02406	0.69	+0.9
2,549,702	-		CCNA_02406	0.70	-1.5
2,549,702	-		CCNA_02406	0.70	-1.5
2,549,712	-		CCNA_02406	0.71	+1.9
2,549,772	-		CCNA_02406	0.80	-1.4
2,549,779	+		CCNA_02406	0.81	+0.9
2,549,813	-		CCNA_02406	0.87	+0.5
2,549,828	-		CCNA_02406	0.89	-0.0
2,549,828	-		CCNA_02406	0.89	-0.6
2,549,838	+				-0.7
2,549,848	+				+1.3
2,549,855	+				-0.8
2,549,863	-				-0.7
2,549,901	-				+0.1
2,549,913	-				-0.6
2,549,926	+				+2.3
2,549,934	-				+1.8
2,549,950	+				+1.7
2,549,950	+				-1.6
2,549,950	+				+0.1
2,549,950	+				+0.8
2,549,950	+				+0.6
2,549,950	+				-0.2
2,549,950	+				-1.2
2,549,955	+				+0.2
2,549,955	+				+1.2
2,549,955	+				-0.9
2,549,958	-				+0.9
2,549,963	-				+1.2
2,549,963	-				+0.9
2,549,968	-				-0.2
2,549,974	+		CCNA_02407	0.10	+1.1
2,549,974	+		CCNA_02407	0.10	+0.9
2,549,974	+		CCNA_02407	0.10	+1.2
2,549,982	-		CCNA_02407	0.11	+1.0
2,550,097	-		CCNA_02407	0.26	+0.8
2,550,103	+		CCNA_02407	0.27	+1.8
2,550,103	+		CCNA_02407	0.27	-2.3
2,550,103	+				+2.3
2,550,103	+		CCNA_02407	0.27	-0.5
2,550,103	+		CCNA_02407	0.27	+0.3
2,550,111	-		CCNA_02407	0.28	-0.3
2,550,111	-		CCNA_02407	0.28	-1.2
2,550,111	-		CCNA_02407	0.28	+0.9
2,550,111	-		CCNA_02407	0.28	-0.2
2,550,111	-		CCNA_02407	0.28	-1.3
2,550,118	-		CCNA_02407	0.29	+0.0
2,550,145	+		CCNA_02407	0.33	+0.9
2,550,191	+		CCNA_02407	0.39	-2.0
2,550,199	-		CCNA_02407	0.40	-1.9
2,550,199	-		CCNA_02407	0.40	-0.3
2,550,199	-		CCNA_02407	0.40	-0.6
2,550,267	+		CCNA_02407	0.48	+0.2
2,550,269	-		CCNA_02407	0.49	+0.4
2,550,305	-		CCNA_02407	0.53	-1.3
2,550,316	+		CCNA_02407	0.55	+0.9
2,550,319	-		CCNA_02407	0.55	-1.5
2,550,319	-		CCNA_02407	0.55	-0.2
2,550,446	-		CCNA_02407	0.72	-1.2
2,550,448	+		CCNA_02407	0.72	+0.4
2,550,448	+		CCNA_02407	0.72	+0.2
2,550,453	+		CCNA_02407	0.73	-1.4
2,550,456	-		CCNA_02407	0.73	+0.1
2,550,456	-		CCNA_02407	0.73	-0.3
2,550,456	-		CCNA_02407	0.73	-0.8
2,550,461	-		CCNA_02407	0.74	-1.4
2,550,470	-		CCNA_02407	0.75	-1.0
2,550,483	-		CCNA_02407	0.77	-1.1
2,550,495	+		CCNA_02407	0.78	+0.1
2,550,503	-		CCNA_02407	0.79	+1.0
2,550,540	-		CCNA_02407	0.84	-1.5
2,550,669	-				-0.0
2,550,669	-				+0.4
2,550,757	-				+1.9
2,550,852	-		CCNA_02408	0.11	+0.5
2,550,855	-		CCNA_02408	0.11	+0.9